RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 LINC00472Q9H8W2 130 aa3.67□□□□□ -1.82
SMAD4-212ENST00000591126 NBPF19A0A087WUL8 3843 aa3.67□□□□□ -1.82
SMAD4-212ENST00000591126 PRO0461Q9UI25 63 aa3.66□□□□□ -1.82
SMAD4-212ENST00000591126 KRTAP4-16G5E9R7 235 aaPredicted RBP3.66□□□□□ -1.82
SMAD4-212ENST00000591126 CYP4F30PQ9H0H9 118 aa3.66□□□□□ -1.82
SMAD4-212ENST00000591126 MXRA5Q9NR99 2828 aa3.66□□□□□ -1.82
SMAD4-212ENST00000591126 A0A1B0GVY2 172 aa3.66□□□□□ -1.82
SMAD4-212ENST00000591126 PANO1I0J062 215 aa3.65□□□□□ -1.82
SMAD4-212ENST00000591126 H1FX-AS1Q4G0G2 97 aa3.64□□□□□ -1.83
SMAD4-212ENST00000591126 LINC01554Q52M75 96 aa3.64□□□□□ -1.83
SMAD4-212ENST00000591126 PSPHP1O15172 72 aa3.64□□□□□ -1.83
SMAD4-212ENST00000591126 KRTAP16-1A8MUX0 517 aa3.64□□□□□ -1.83
SMAD4-212ENST00000591126 MMP24-AS1A0A0U1RRL7 71 aa3.63□□□□□ -1.83
SMAD4-212ENST00000591126 COA5Q86WW8 74 aa3.63□□□□□ -1.83
SMAD4-212ENST00000591126 R4GN34 69 aa3.63□□□□□ -1.83
SMAD4-212ENST00000591126 SMCPP49901 116 aaPredicted RBP3.63□□□□□ -1.83
SMAD4-212ENST00000591126 KRTAP13-1Q8IUC0 172 aa3.63□□□□□ -1.83
SMAD4-212ENST00000591126 CRIPTQ9P021 101 aa3.62□□□□□ -1.83
SMAD4-212ENST00000591126 A0A087X002 238 aa3.62□□□□□ -1.83
SMAD4-212ENST00000591126 LUZP6Q538Z0 58 aa3.61□□□□□ -1.83
SMAD4-212ENST00000591126 DMAC1Q96GE9 116 aa3.6□□□□□ -1.83
SMAD4-212ENST00000591126 KLKP1Q107X0 134 aa3.6□□□□□ -1.83
SMAD4-212ENST00000591126 A0A0G2JQZ4 141 aa3.59□□□□□ -1.84
SMAD4-212ENST00000591126 Q5W150 140 aa3.59□□□□□ -1.84
SMAD4-212ENST00000591126 KRTAP13-2Q52LG2 175 aa3.56□□□□□ -1.84
SMAD4-212ENST00000591126 TENM1Q9UKZ4 2725 aa3.56□□□□□ -1.84
SMAD4-212ENST00000591126 MIR22HGQ0VDD5 57 aa3.56□□□□□ -1.84
SMAD4-212ENST00000591126 NOTCH2NLQ7Z3S9 236 aa3.56□□□□□ -1.84
SMAD4-212ENST00000591126 CDC42SE1Q9NRR8 79 aa3.56□□□□□ -1.84
SMAD4-212ENST00000591126 SPINT4Q6UDR6 99 aa3.55□□□□□ -1.84
SMAD4-212ENST00000591126 C20orf166-AS1Q96NR2 134 aa3.55□□□□□ -1.84
SMAD4-212ENST00000591126 SVEP1Q4LDE5 3571 aa3.55□□□□□ -1.84
SMAD4-212ENST00000591126 A0A1B0GU33 70 aa3.54□□□□□ -1.84
SMAD4-212ENST00000591126 A8MUU9 505 aa3.54□□□□□ -1.84
SMAD4-212ENST00000591126 Q8NDZ9 215 aa3.53□□□□□ -1.84
SMAD4-212ENST00000591126 KRTAP10-8P60410 259 aa3.53□□□□□ -1.84
SMAD4-212ENST00000591126 Q8N9P0 234 aaPredicted RBP3.53□□□□□ -1.84
SMAD4-212ENST00000591126 H7BZZ5 65 aa3.52□□□□□ -1.85
SMAD4-212ENST00000591126 FBN1P35555 2871 aaKnown RBP3.52□□□□□ -1.85
SMAD4-212ENST00000591126 M0QZ58 72 aa3.52□□□□□ -1.85
SMAD4-212ENST00000591126 OCR1Q9BZK8 76 aa3.52□□□□□ -1.85
SMAD4-212ENST00000591126 KRTAP1-4P0C5Y4 121 aa3.5□□□□□ -1.85
SMAD4-212ENST00000591126 NBEAL2Q6ZNJ1 2754 aa3.49□□□□□ -1.85
SMAD4-212ENST00000591126 VWFP04275 2813 aa3.49□□□□□ -1.85
SMAD4-212ENST00000591126 XP32Q5T750 250 aa3.48□□□□□ -1.85
SMAD4-212ENST00000591126 PRO2289Q9P1D8 64 aa3.47□□□□□ -1.85
SMAD4-212ENST00000591126 VPS13CQ709C8 3753 aa3.47□□□□□ -1.85
SMAD4-212ENST00000591126 ZNF469Q96JG9 3925 aaPredicted RBP3.47□□□□□ -1.85
SMAD4-212ENST00000591126 STAB2Q8WWQ8 2551 aa3.47□□□□□ -1.85
SMAD4-212ENST00000591126 PKD1L1Q8TDX9 2849 aa3.47□□□□□ -1.85
SMAD4-212ENST00000591126 ADM2Q7Z4H4 148 aa3.46□□□□□ -1.85
SMAD4-212ENST00000591126 KRTAP7-1Q8IUC3 87 aa3.46□□□□□ -1.86
SMAD4-212ENST00000591126 A0A0D9SG42 100 aa3.45□□□□□ -1.86
SMAD4-212ENST00000591126 KRTAP13-3Q3SY46 172 aa3.45□□□□□ -1.86
SMAD4-212ENST00000591126 KRTAP11-1Q8IUC1 163 aa3.45□□□□□ -1.86
SMAD4-212ENST00000591126 TGP01266 2768 aa3.45□□□□□ -1.86
SMAD4-212ENST00000591126 CUBNO60494 3623 aa3.44□□□□□ -1.86
SMAD4-212ENST00000591126 DMBT1Q9UGM3 2413 aaPredicted RBP3.42□□□□□ -1.86
SMAD4-212ENST00000591126 Q1T7F1 81 aa3.41□□□□□ -1.86
SMAD4-212ENST00000591126 LINC01558Q9Y6Z2 57 aa3.41□□□□□ -1.86
SMAD4-212ENST00000591126 AKAP9Q99996 3911 aa3.4□□□□□ -1.87
SMAD4-212ENST00000591126 KRTAP17-1Q9BYP8 105 aa3.36□□□□□ -1.87
SMAD4-212ENST00000591126 KRTAP10-10P60014 251 aa3.36□□□□□ -1.87
SMAD4-212ENST00000591126 ANK3Q12955 4377 aaKnown RBP3.36□□□□□ -1.87
SMAD4-212ENST00000591126 TENM3Q9P273 2699 aa3.35□□□□□ -1.87
SMAD4-212ENST00000591126 FBN3Q75N90 2809 aa3.35□□□□□ -1.87
SMAD4-212ENST00000591126 TRRAPQ9Y4A5 3859 aa3.35□□□□□ -1.87
SMAD4-212ENST00000591126 CYSTM1Q9H1C7 97 aa3.34□□□□□ -1.87
SMAD4-212ENST00000591126 NDUFAF8A1L188 74 aa3.32□□□□□ -1.88
SMAD4-212ENST00000591126 TNP1P09430 55 aa3.31□□□□□ -1.88
SMAD4-212ENST00000591126 Q5VV11 94 aa3.31□□□□□ -1.88
SMAD4-212ENST00000591126 KRTAP23-1A1A580 65 aa3.29□□□□□ -1.88
SMAD4-212ENST00000591126 TENM2Q9NT68 2774 aa3.29□□□□□ -1.88
SMAD4-212ENST00000591126 DNHD1Q96M86 4753 aa3.28□□□□□ -1.88
SMAD4-212ENST00000591126 A6NN06 94 aa3.28□□□□□ -1.88
SMAD4-212ENST00000591126 MEGF8Q7Z7M0 2845 aa3.28□□□□□ -1.88
SMAD4-212ENST00000591126 ROMO1P60602 79 aa3.27□□□□□ -1.89
SMAD4-212ENST00000591126 FLG2Q5D862 2391 aaPredicted RBP3.26□□□□□ -1.89
SMAD4-212ENST00000591126 PP632Q6XCG6 107 aa3.25□□□□□ -1.89
SMAD4-212ENST00000591126 KRTAP3-3Q9BYR6 98 aa3.23□□□□□ -1.89
SMAD4-212ENST00000591126 KRTAP3-2Q9BYR7 98 aa3.23□□□□□ -1.89
SMAD4-212ENST00000591126 H0YAA0 97 aa3.23□□□□□ -1.89
SMAD4-212ENST00000591126 A8MU10 97 aa3.22□□□□□ -1.89
SMAD4-212ENST00000591126 MT1HL1P0DM35 61 aa3.21□□□□□ -1.9
SMAD4-212ENST00000591126 KRTAP25-1Q3LHN0 102 aa3.18□□□□□ -1.9
SMAD4-212ENST00000591126 COL7A1Q02388 2944 aa3.16□□□□□ -1.9
SMAD4-212ENST00000591126 SPATA8Q6RVD6 105 aa3.16□□□□□ -1.9
SMAD4-212ENST00000591126 KRTAP10-4P60372 401 aaPredicted RBP3.11□□□□□ -1.91
SMAD4-212ENST00000591126 ALMS1Q8TCU4 4167 aa3.09□□□□□ -1.91
SMAD4-212ENST00000591126 ANK2Q01484 3957 aa3.08□□□□□ -1.92
SMAD4-212ENST00000591126 PRKDCP78527 4128 aaKnown RBP3.07□□□□□ -1.92
SMAD4-212ENST00000591126 SRRM2Q9UQ35 2752 aaKnown RBP3.06□□□□□ -1.92
SMAD4-212ENST00000591126 KRTAP4-5Q9BYR2 181 aa3.04□□□□□ -1.92
SMAD4-212ENST00000591126 HUWE1Q7Z6Z7 4374 aaKnown RBP3.01□□□□□ -1.93
SMAD4-212ENST00000591126 DNAH9Q9NYC9 4486 aa3□□□□□ -1.93
SMAD4-212ENST00000591126 P0C880 135 aa2.97□□□□□ -1.93
SMAD4-212ENST00000591126 CMYA5Q8N3K9 4069 aa2.93□□□□□ -1.94
SMAD4-212ENST00000591126 C10orf95Q9H7T3 257 aa2.93□□□□□ -1.94
SMAD4-212ENST00000591126 KRTAP13-4Q3LI77 160 aa2.91□□□□□ -1.94
SMAD4-212ENST00000591126 KMT2CQ8NEZ4 4911 aaKnown RBP2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms