RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 PRLHP81277 87 aa6.07□□□□□ -1.44
ZNF540-209ENST00000590588 FAM19A1Q7Z5A9 133 aa6.07□□□□□ -1.44
ZNF540-209ENST00000590588 ATOX1O00244 68 aa6.06□□□□□ -1.44
ZNF540-209ENST00000590588 IGLV8-61A0A075B6I0 122 aa6.05□□□□□ -1.44
ZNF540-209ENST00000590588 Q8NBF4 154 aa6.05□□□□□ -1.44
ZNF540-209ENST00000590588 SSPOA2VEC9 5147 aa6.04□□□□□ -1.44
ZNF540-209ENST00000590588 FAM236AA0A1B0GUQ0 79 aa6.02□□□□□ -1.45
ZNF540-209ENST00000590588 FAM236BA0A1B0GV22 79 aa6.02□□□□□ -1.45
ZNF540-209ENST00000590588 SPRR1BP22528 89 aa6.02□□□□□ -1.45
ZNF540-209ENST00000590588 PCOTHQ58A44 107 aa6.02□□□□□ -1.45
ZNF540-209ENST00000590588 Q8N377 158 aa6.02□□□□□ -1.45
ZNF540-209ENST00000590588 SMIM20Q8N5G0 67 aa6.02□□□□□ -1.45
ZNF540-209ENST00000590588 Q9BRP9 147 aa6.02□□□□□ -1.45
ZNF540-209ENST00000590588 SPRR4Q96PI1 79 aa6.01□□□□□ -1.45
ZNF540-209ENST00000590588 FLGP20930 4061 aaPredicted RBP6□□□□□ -1.45
ZNF540-209ENST00000590588 RPS29P62273 56 aaKnown RBP6□□□□□ -1.45
ZNF540-209ENST00000590588 Q6ZVQ6 151 aa6□□□□□ -1.45
ZNF540-209ENST00000590588 HIGD2AQ9BW72 106 aa6□□□□□ -1.45
ZNF540-209ENST00000590588 USH2AO75445 5202 aa5.99□□□□□ -1.45
ZNF540-209ENST00000590588 F8WEM9 126 aa5.99□□□□□ -1.45
ZNF540-209ENST00000590588 ZNF706Q9Y5V0 76 aaPredicted RBP5.99□□□□□ -1.45
ZNF540-209ENST00000590588 UQCRQO14949 82 aa5.98□□□□□ -1.45
ZNF540-209ENST00000590588 COX6B2Q6YFQ2 88 aa5.97□□□□□ -1.45
ZNF540-209ENST00000590588 FCGBPQ9Y6R7 5405 aaPredicted RBP5.95□□□□□ -1.46
ZNF540-209ENST00000590588 COX7CP15954 63 aa5.95□□□□□ -1.46
ZNF540-209ENST00000590588 IGKV3D-7A0A0C4DH55 119 aa5.94□□□□□ -1.46
ZNF540-209ENST00000590588 NREPQ16612 68 aa5.94□□□□□ -1.46
ZNF540-209ENST00000590588 SSBP3-AS1Q7Z2R9 100 aa5.94□□□□□ -1.46
ZNF540-209ENST00000590588 SERP2Q8N6R1 65 aa5.94□□□□□ -1.46
ZNF540-209ENST00000590588 SYNE2Q8WXH0 6885 aaKnown RBP5.94□□□□□ -1.46
ZNF540-209ENST00000590588 SMIM29Q86T20 159 aa5.93□□□□□ -1.46
ZNF540-209ENST00000590588 MACF1Q9UPN3 7388 aaKnown RBP5.92□□□□□ -1.46
ZNF540-209ENST00000590588 ERC2-IT1O76042 136 aa5.91□□□□□ -1.46
ZNF540-209ENST00000590588 DEFB105AQ8NG35 78 aa5.91□□□□□ -1.46
ZNF540-209ENST00000590588 A0A1W2PNM2 257 aa5.9□□□□□ -1.46
ZNF540-209ENST00000590588 ST20-AS1Q8NBB2 130 aa5.9□□□□□ -1.46
ZNF540-209ENST00000590588 TRAV7A0A075B6U4 112 aa5.89□□□□□ -1.47
ZNF540-209ENST00000590588 BPY2O14599 106 aa5.89□□□□□ -1.47
ZNF540-209ENST00000590588 MOBPQ13875 183 aa5.89□□□□□ -1.47
ZNF540-209ENST00000590588 LINC00483Q53H64 154 aa5.89□□□□□ -1.47
ZNF540-209ENST00000590588 IGLV9-49A0A0B4J1Y8 123 aa5.88□□□□□ -1.47
ZNF540-209ENST00000590588 KRTAP19-1Q8IUB9 90 aa5.88□□□□□ -1.47
ZNF540-209ENST00000590588 A0A087WVE0 104 aa5.87□□□□□ -1.47
ZNF540-209ENST00000590588 C9orf92A6NGG3 77 aa5.87□□□□□ -1.47
ZNF540-209ENST00000590588 C9orf153Q5TBE3 101 aa5.87□□□□□ -1.47
ZNF540-209ENST00000590588 CCDC179H3BU77 68 aa5.86□□□□□ -1.47
ZNF540-209ENST00000590588 IGFL1Q6UW32 110 aa5.86□□□□□ -1.47
ZNF540-209ENST00000590588 J3KT08 172 aa5.85□□□□□ -1.47
ZNF540-209ENST00000590588 IGKV4-1P06312 121 aa5.85□□□□□ -1.47
ZNF540-209ENST00000590588 NDUFC1O43677 76 aa5.83□□□□□ -1.48
ZNF540-209ENST00000590588 TMEM258P61165 79 aa5.83□□□□□ -1.48
ZNF540-209ENST00000590588 KRTAP9-8Q9BYQ0 159 aa5.83□□□□□ -1.48
ZNF540-209ENST00000590588 SS18L2Q9UHA2 77 aa5.83□□□□□ -1.48
ZNF540-209ENST00000590588 KLKP1Q107X0 134 aa5.82□□□□□ -1.48
ZNF540-209ENST00000590588 CD164Q04900 197 aa5.79□□□□□ -1.48
ZNF540-209ENST00000590588 LIMD2Q9BT23 127 aa5.79□□□□□ -1.48
ZNF540-209ENST00000590588 DSCR10P59022 87 aa5.78□□□□□ -1.48
ZNF540-209ENST00000590588 RPL37P61927 97 aaKnown RBP5.78□□□□□ -1.48
ZNF540-209ENST00000590588 A0A087WSZ3 146 aa5.77□□□□□ -1.49
ZNF540-209ENST00000590588 ATP5EP56381 51 aaPredicted RBP5.77□□□□□ -1.49
ZNF540-209ENST00000590588 OCR1Q9BZK8 76 aa5.77□□□□□ -1.49
ZNF540-209ENST00000590588 LINC00472Q9H8W2 130 aa5.76□□□□□ -1.49
ZNF540-209ENST00000590588 A8MWP4 228 aa5.75□□□□□ -1.49
ZNF540-209ENST00000590588 HCG22E2RYF7 251 aa5.75□□□□□ -1.49
ZNF540-209ENST00000590588 RPS28P62857 69 aaKnown RBP5.75□□□□□ -1.49
ZNF540-209ENST00000590588 KRTAP4-8Q9BYQ9 185 aa5.75□□□□□ -1.49
ZNF540-209ENST00000590588 H3BPC8 53 aa5.73□□□□□ -1.49
ZNF540-209ENST00000590588 NDUFB1O75438 58 aa5.73□□□□□ -1.49
ZNF540-209ENST00000590588 KRTAP6-3Q3LI67 103 aa5.73□□□□□ -1.49
ZNF540-209ENST00000590588 PRR15Q8IV56 129 aa5.73□□□□□ -1.49
ZNF540-209ENST00000590588 K7EQZ3 153 aa5.72□□□□□ -1.49
ZNF540-209ENST00000590588 HRCT1Q6UXD1 115 aa5.72□□□□□ -1.49
ZNF540-209ENST00000590588 C20orf197Q8N268 126 aa5.72□□□□□ -1.49
ZNF540-209ENST00000590588 C5orf47Q569G3 176 aa5.71□□□□□ -1.5
ZNF540-209ENST00000590588 Q5XG85 94 aa5.71□□□□□ -1.5
ZNF540-209ENST00000590588 TMEM254Q8TBM7 123 aa5.71□□□□□ -1.5
ZNF540-209ENST00000590588 Q8N9L7 120 aa5.7□□□□□ -1.5
ZNF540-209ENST00000590588 H7BZZ5 65 aa5.69□□□□□ -1.5
ZNF540-209ENST00000590588 MT2AP02795 61 aa5.67□□□□□ -1.5
ZNF540-209ENST00000590588 TP53AIP1Q9HCN2 124 aa5.67□□□□□ -1.5
ZNF540-209ENST00000590588 FAM236DA0A1B0GTK5 79 aa5.66□□□□□ -1.5
ZNF540-209ENST00000590588 FAM236CP0DP71 79 aa5.66□□□□□ -1.5
ZNF540-209ENST00000590588 Q96NJ1 140 aa5.66□□□□□ -1.5
ZNF540-209ENST00000590588 KRTAP9-3Q9BYQ3 159 aa5.66□□□□□ -1.5
ZNF540-209ENST00000590588 CASC2Q6XLA1 102 aa5.65□□□□□ -1.5
ZNF540-209ENST00000590588 MP68P56378 58 aa5.64□□□□□ -1.51
ZNF540-209ENST00000590588 KRTAP19-6Q3LI70 58 aa5.64□□□□□ -1.51
ZNF540-209ENST00000590588 C1orf195Q5TG92 126 aa5.64□□□□□ -1.51
ZNF540-209ENST00000590588 ZCCHC13Q8WW36 166 aaKnown RBP5.64□□□□□ -1.51
ZNF540-209ENST00000590588 KRTAP4-12Q9BQ66 201 aa5.64□□□□□ -1.51
ZNF540-209ENST00000590588 MMP24-AS1A0A0U1RRL7 71 aa5.63□□□□□ -1.51
ZNF540-209ENST00000590588 A0A1B0GVX0 72 aa5.63□□□□□ -1.51
ZNF540-209ENST00000590588 C8orf87E5RJ46 101 aa5.63□□□□□ -1.51
ZNF540-209ENST00000590588 MT1FP04733 61 aa5.62□□□□□ -1.51
ZNF540-209ENST00000590588 KRTAP10-10P60014 251 aa5.62□□□□□ -1.51
ZNF540-209ENST00000590588 ATP11AUNQ6ZP68 121 aa5.62□□□□□ -1.51
ZNF540-209ENST00000590588 CYSTM1Q9H1C7 97 aa5.62□□□□□ -1.51
ZNF540-209ENST00000590588 SERP1Q9Y6X1 66 aa5.62□□□□□ -1.51
ZNF540-209ENST00000590588 A0A0G2JQZ4 141 aa5.61□□□□□ -1.51
ZNF540-209ENST00000590588 hDV103S1A0JD37 113 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms