RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 IGHV6-1A0A0B4J1U7 121 aa11.38□□□□□ -0.59
TRIM47-204ENST00000587339 C1orf195Q5TG92 126 aa11.38□□□□□ -0.59
TRIM47-204ENST00000587339 CASC2Q6XLA1 102 aa11.38□□□□□ -0.59
TRIM47-204ENST00000587339 KIAA1109Q2LD37 5005 aa11.38□□□□□ -0.59
TRIM47-204ENST00000587339 KRTAP29-1A8MX34 341 aaPredicted RBP11.37□□□□□ -0.59
TRIM47-204ENST00000587339 MMP24-AS1A0A0U1RRL7 71 aa11.36□□□□□ -0.59
TRIM47-204ENST00000587339 OCR1Q9BZK8 76 aa11.36□□□□□ -0.59
TRIM47-204ENST00000587339 CYSTM1Q9H1C7 97 aa11.36□□□□□ -0.59
TRIM47-204ENST00000587339 RPS29P62273 56 aaKnown RBP11.35□□□□□ -0.59
TRIM47-204ENST00000587339 KRTAP17-1Q9BYP8 105 aa11.35□□□□□ -0.59
TRIM47-204ENST00000587339 Q8N1X5 172 aa11.34□□□□□ -0.59
TRIM47-204ENST00000587339 C8orf17Q9NRJ1 99 aa11.34□□□□□ -0.59
TRIM47-204ENST00000587339 hDV103S1A0JD37 113 aa11.33□□□□□ -0.6
TRIM47-204ENST00000587339 C5orf47Q569G3 176 aa11.31□□□□□ -0.6
TRIM47-204ENST00000587339 PKHD1L1Q86WI1 4243 aa11.29□□□□□ -0.6
TRIM47-204ENST00000587339 NOTCH2NLQ7Z3S9 236 aa11.27□□□□□ -0.6
TRIM47-204ENST00000587339 C20orf197Q8N268 126 aa11.26□□□□□ -0.61
TRIM47-204ENST00000587339 C8orf87E5RJ46 101 aa11.23□□□□□ -0.61
TRIM47-204ENST00000587339 KRTAP10-8P60410 259 aa11.22□□□□□ -0.61
TRIM47-204ENST00000587339 MRPL34Q9BQ48 92 aaKnown RBP11.21□□□□□ -0.61
TRIM47-204ENST00000587339 TMEM254Q8TBM7 123 aa11.21□□□□□ -0.62
TRIM47-204ENST00000587339 LINC00313P59037 77 aa11.2□□□□□ -0.62
TRIM47-204ENST00000587339 OXTP01178 125 aa11.19□□□□□ -0.62
TRIM47-204ENST00000587339 LRP1Q07954 4544 aaKnown RBP11.19□□□□□ -0.62
TRIM47-204ENST00000587339 KLKP1Q107X0 134 aa11.17□□□□□ -0.62
TRIM47-204ENST00000587339 SNURFQ9Y675 71 aa11.17□□□□□ -0.62
TRIM47-204ENST00000587339 NDUFS5O43920 106 aa11.16□□□□□ -0.62
TRIM47-204ENST00000587339 TP53AIP1Q9HCN2 124 aa11.14□□□□□ -0.63
TRIM47-204ENST00000587339 FLG2Q5D862 2391 aaPredicted RBP11.12□□□□□ -0.63
TRIM47-204ENST00000587339 FAM236DA0A1B0GTK5 79 aa11.11□□□□□ -0.63
TRIM47-204ENST00000587339 FAM236CP0DP71 79 aa11.11□□□□□ -0.63
TRIM47-204ENST00000587339 A0A0U1RQV1 116 aa11.11□□□□□ -0.63
TRIM47-204ENST00000587339 TNXBP22105 4242 aa11.1□□□□□ -0.63
TRIM47-204ENST00000587339 MP68P56378 58 aa11.09□□□□□ -0.63
TRIM47-204ENST00000587339 RETNLBQ9BQ08 111 aa11.09□□□□□ -0.63
TRIM47-204ENST00000587339 TRAV22A0A0B4J277 110 aa11.07□□□□□ -0.64
TRIM47-204ENST00000587339 H0Y9P7 68 aa11.07□□□□□ -0.64
TRIM47-204ENST00000587339 H7BZZ5 65 aa11.07□□□□□ -0.64
TRIM47-204ENST00000587339 FAT3Q8TDW7 4589 aa11.07□□□□□ -0.64
TRIM47-204ENST00000587339 SERP1Q9Y6X1 66 aa11.06□□□□□ -0.64
TRIM47-204ENST00000587339 KRTAP16-1A8MUX0 517 aa11.05□□□□□ -0.64
TRIM47-204ENST00000587339 C4orf26Q17RF5 130 aa11.05□□□□□ -0.64
TRIM47-204ENST00000587339 MYCBP2O75592 4640 aa11.05□□□□□ -0.64
TRIM47-204ENST00000587339 MT1HL1P0DM35 61 aa11.04□□□□□ -0.64
TRIM47-204ENST00000587339 Q8N9P0 234 aaPredicted RBP11.04□□□□□ -0.64
TRIM47-204ENST00000587339 KRTAP4-5Q9BYR2 181 aa11.04□□□□□ -0.64
TRIM47-204ENST00000587339 NDUFC1O43677 76 aa11.03□□□□□ -0.64
TRIM47-204ENST00000587339 LINC00208Q96KT6 92 aa11.03□□□□□ -0.64
TRIM47-204ENST00000587339 ZCCHC13Q8WW36 166 aaKnown RBP11.01□□□□□ -0.65
TRIM47-204ENST00000587339 H3BPC8 53 aa11□□□□□ -0.65
TRIM47-204ENST00000587339 C1orf64Q8NEQ6 169 aa10.97□□□□□ -0.65
TRIM47-204ENST00000587339 DMBT1Q9UGM3 2413 aaPredicted RBP10.96□□□□□ -0.66
TRIM47-204ENST00000587339 C9orf92A6NGG3 77 aa10.96□□□□□ -0.66
TRIM47-204ENST00000587339 ATP5EP56381 51 aaPredicted RBP10.95□□□□□ -0.66
TRIM47-204ENST00000587339 Q5W150 140 aa10.95□□□□□ -0.66
TRIM47-204ENST00000587339 FP248Q71RG6 208 aaPredicted RBP10.92□□□□□ -0.66
TRIM47-204ENST00000587339 SMIM26A0A096LP01 95 aa10.9□□□□□ -0.66
TRIM47-204ENST00000587339 KRTAP13-3Q3SY46 172 aa10.9□□□□□ -0.66
TRIM47-204ENST00000587339 BIRC6Q9NR09 4857 aa10.9□□□□□ -0.66
TRIM47-204ENST00000587339 IGLV7-46A0A075B6I9 117 aa10.84□□□□□ -0.67
TRIM47-204ENST00000587339 LOC101927531A0A1B0GV80 90 aa10.84□□□□□ -0.67
TRIM47-204ENST00000587339 C20orf166-AS1Q96NR2 134 aa10.83□□□□□ -0.68
TRIM47-204ENST00000587339 PRO0628Q9UI54 55 aa10.82□□□□□ -0.68
TRIM47-204ENST00000587339 A8MUU9 505 aa10.81□□□□□ -0.68
TRIM47-204ENST00000587339 ABCA13Q86UQ4 5058 aa10.8□□□□□ -0.68
TRIM47-204ENST00000587339 HERC2O95714 4834 aa10.8□□□□□ -0.68
TRIM47-204ENST00000587339 PCOTHQ58A44 107 aa10.78□□□□□ -0.68
TRIM47-204ENST00000587339 CYP4F30PQ9H0H9 118 aa10.76□□□□□ -0.69
TRIM47-204ENST00000587339 PRR4Q16378 134 aa10.76□□□□□ -0.69
TRIM47-204ENST00000587339 IGKV2-30P06310 120 aa10.73□□□□□ -0.69
TRIM47-204ENST00000587339 J3QL48 77 aa10.72□□□□□ -0.69
TRIM47-204ENST00000587339 Q75L30 129 aa10.72□□□□□ -0.69
TRIM47-204ENST00000587339 SPANXA2-OT1Q8N9U9 137 aa10.72□□□□□ -0.69
TRIM47-204ENST00000587339 IGKV2D-30A0A075B6S6 120 aa10.69□□□□□ -0.7
TRIM47-204ENST00000587339 XP32Q5T750 250 aa10.66□□□□□ -0.7
TRIM47-204ENST00000587339 C7orf65Q6ZTY9 151 aa10.62□□□□□ -0.71
TRIM47-204ENST00000587339 TPRXLQ17RH7 258 aa10.62□□□□□ -0.71
TRIM47-204ENST00000587339 RPL37P61927 97 aaKnown RBP10.6□□□□□ -0.71
TRIM47-204ENST00000587339 HRES1P13985 223 aa10.6□□□□□ -0.71
TRIM47-204ENST00000587339 ATP11AUNQ6ZP68 121 aa10.6□□□□□ -0.71
TRIM47-204ENST00000587339 MPLKIPQ8TAP9 179 aa10.56□□□□□ -0.72
TRIM47-204ENST00000587339 BRK1Q8WUW1 75 aa10.56□□□□□ -0.72
TRIM47-204ENST00000587339 SPINK7P58062 85 aa10.51□□□□□ -0.73
TRIM47-204ENST00000587339 Q1T7F1 81 aa10.46□□□□□ -0.73
TRIM47-204ENST00000587339 PCLOQ9Y6V0 5065 aa10.45□□□□□ -0.74
TRIM47-204ENST00000587339 DMAC1Q96GE9 116 aa10.44□□□□□ -0.74
TRIM47-204ENST00000587339 COA5Q86WW8 74 aa10.42□□□□□ -0.74
TRIM47-204ENST00000587339 LPAP08519 4548 aa10.42□□□□□ -0.74
TRIM47-204ENST00000587339 ACYP2P14621 99 aa10.41□□□□□ -0.74
TRIM47-204ENST00000587339 LRP2P98164 4655 aa10.37□□□□□ -0.75
TRIM47-204ENST00000587339 V9GYY9 64 aa10.32□□□□□ -0.76
TRIM47-204ENST00000587339 A8MUN3 132 aa10.31□□□□□ -0.76
TRIM47-204ENST00000587339 CHKB-CPT1BH3BT56 60 aa10.26□□□□□ -0.77
TRIM47-204ENST00000587339 SEC61BP60468 96 aaKnown RBP10.25□□□□□ -0.77
TRIM47-204ENST00000587339 PSPHP1O15172 72 aa10.24□□□□□ -0.77
TRIM47-204ENST00000587339 COX6B2Q6YFQ2 88 aa10.24□□□□□ -0.77
TRIM47-204ENST00000587339 KRTAP3-1Q9BYR8 98 aa10.23□□□□□ -0.77
TRIM47-204ENST00000587339 HERC1Q15751 4861 aa10.21□□□□□ -0.78
TRIM47-204ENST00000587339 Q5VV11 94 aa10.16□□□□□ -0.78
TRIM47-204ENST00000587339 PMAIP1Q13794 54 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms