RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 LINC00846Q9NV44 126 aa5.79□□□□□ -1.48
LIG3-209ENST00000586435 A0A1B0GVX0 72 aa5.78□□□□□ -1.48
LIG3-209ENST00000586435 A0A1B0GV72 72 aa5.77□□□□□ -1.49
LIG3-209ENST00000586435 KRTAP19-6Q3LI70 58 aa5.77□□□□□ -1.49
LIG3-209ENST00000586435 VAMP8Q9BV40 100 aa5.77□□□□□ -1.49
LIG3-209ENST00000586435 SYNE2Q8WXH0 6885 aaKnown RBP5.77□□□□□ -1.49
LIG3-209ENST00000586435 UBE2V1Q13404 147 aa5.76□□□□□ -1.49
LIG3-209ENST00000586435 ZCCHC13Q8WW36 166 aaKnown RBP5.76□□□□□ -1.49
LIG3-209ENST00000586435 S100A1P23297 94 aa5.75□□□□□ -1.49
LIG3-209ENST00000586435 SPINK7P58062 85 aa5.74□□□□□ -1.49
LIG3-209ENST00000586435 A8MWP4 228 aa5.73□□□□□ -1.49
LIG3-209ENST00000586435 COX6CP09669 75 aa5.73□□□□□ -1.49
LIG3-209ENST00000586435 J3KT08 172 aa5.72□□□□□ -1.49
LIG3-209ENST00000586435 PSMB2P49721 201 aa5.72□□□□□ -1.49
LIG3-209ENST00000586435 C21orf62-AS1Q17RA5 79 aa5.71□□□□□ -1.5
LIG3-209ENST00000586435 Q8N9P0 234 aaPredicted RBP5.71□□□□□ -1.5
LIG3-209ENST00000586435 RBM3P98179 157 aaKnown RBP5.7□□□□□ -1.5
LIG3-209ENST00000586435 HSD52Q0P140 79 aa5.7□□□□□ -1.5
LIG3-209ENST00000586435 VPS25Q9BRG1 176 aa5.7□□□□□ -1.5
LIG3-209ENST00000586435 K7ERJ3 54 aa5.69□□□□□ -1.5
LIG3-209ENST00000586435 DSCR8Q96T75 97 aa5.69□□□□□ -1.5
LIG3-209ENST00000586435 WFDC13Q8IUB5 93 aa5.68□□□□□ -1.5
LIG3-209ENST00000586435 NDUFB1O75438 58 aa5.66□□□□□ -1.5
LIG3-209ENST00000586435 Q6ZQT0 140 aa5.65□□□□□ -1.5
LIG3-209ENST00000586435 C9JAW5 83 aa5.64□□□□□ -1.51
LIG3-209ENST00000586435 KRTAP6-3Q3LI67 103 aa5.63□□□□□ -1.51
LIG3-209ENST00000586435 C8orf17Q9NRJ1 99 aa5.63□□□□□ -1.51
LIG3-209ENST00000586435 A0A1B0GW54 56 aa5.61□□□□□ -1.51
LIG3-209ENST00000586435 BAALC-AS2P0C853 105 aa5.6□□□□□ -1.51
LIG3-209ENST00000586435 SCGB1C2P0DMR2 95 aa5.6□□□□□ -1.51
LIG3-209ENST00000586435 LYRM7Q5U5X0 104 aa5.6□□□□□ -1.51
LIG3-209ENST00000586435 IGKV3D-7A0A0C4DH55 119 aa5.59□□□□□ -1.51
LIG3-209ENST00000586435 PYY3Q5JQD4 70 aa5.59□□□□□ -1.51
LIG3-209ENST00000586435 Q6ZVQ6 151 aa5.59□□□□□ -1.51
LIG3-209ENST00000586435 JMJD7-PLA2G4BH0Y9G9 81 aa5.57□□□□□ -1.52
LIG3-209ENST00000586435 H1FX-AS1Q4G0G2 97 aa5.57□□□□□ -1.52
LIG3-209ENST00000586435 UQCR10Q9UDW1 63 aa5.57□□□□□ -1.52
LIG3-209ENST00000586435 LOC110117498A0A087WWA1 95 aa5.56□□□□□ -1.52
LIG3-209ENST00000586435 PRR15Q8IV56 129 aa5.56□□□□□ -1.52
LIG3-209ENST00000586435 PDE6GP18545 87 aa5.54□□□□□ -1.52
LIG3-209ENST00000586435 TMEM254Q8TBM7 123 aa5.54□□□□□ -1.52
LIG3-209ENST00000586435 MMP24-AS1A0A0U1RRL7 71 aa5.53□□□□□ -1.52
LIG3-209ENST00000586435 MRPL34Q9BQ48 92 aaKnown RBP5.53□□□□□ -1.52
LIG3-209ENST00000586435 ATXN8Q156A1 80 aa5.51□□□□□ -1.53
LIG3-209ENST00000586435 C14orf132Q9NPU4 83 aa5.49□□□□□ -1.53
LIG3-209ENST00000586435 hDV103S1A0JD37 113 aa5.48□□□□□ -1.53
LIG3-209ENST00000586435 NREPQ16612 68 aa5.48□□□□□ -1.53
LIG3-209ENST00000586435 C7orf65Q6ZTY9 151 aa5.47□□□□□ -1.53
LIG3-209ENST00000586435 NEBP20929 6669 aa5.45□□□□□ -1.54
LIG3-209ENST00000586435 IGKV2D-30A0A075B6S6 120 aa5.45□□□□□ -1.54
LIG3-209ENST00000586435 K7EQZ3 153 aa5.45□□□□□ -1.54
LIG3-209ENST00000586435 NDUFS5O43920 106 aa5.45□□□□□ -1.54
LIG3-209ENST00000586435 IGKV2-30P06310 120 aa5.45□□□□□ -1.54
LIG3-209ENST00000586435 M0R143 59 aa5.42□□□□□ -1.54
LIG3-209ENST00000586435 Q5W150 140 aa5.42□□□□□ -1.54
LIG3-209ENST00000586435 NAA38Q9BRA0 125 aaKnown RBP5.42□□□□□ -1.54
LIG3-209ENST00000586435 A6NN06 94 aa5.4□□□□□ -1.54
LIG3-209ENST00000586435 SMCPP49901 116 aaPredicted RBP5.4□□□□□ -1.54
LIG3-209ENST00000586435 MT1BP07438 61 aa5.39□□□□□ -1.55
LIG3-209ENST00000586435 LOC100996750A0A140TA64 210 aa5.38□□□□□ -1.55
LIG3-209ENST00000586435 C4orf26Q17RF5 130 aa5.38□□□□□ -1.55
LIG3-209ENST00000586435 KRTAP4-6Q9BYQ5 205 aa5.38□□□□□ -1.55
LIG3-209ENST00000586435 BPY2O14599 106 aa5.37□□□□□ -1.55
LIG3-209ENST00000586435 FAM236AA0A1B0GUQ0 79 aa5.36□□□□□ -1.55
LIG3-209ENST00000586435 FAM236BA0A1B0GV22 79 aa5.36□□□□□ -1.55
LIG3-209ENST00000586435 KRTAP19-8Q3LI54 63 aa5.36□□□□□ -1.55
LIG3-209ENST00000586435 Q5VV11 94 aa5.36□□□□□ -1.55
LIG3-209ENST00000586435 SPRR2GQ9BYE4 73 aa5.36□□□□□ -1.55
LIG3-209ENST00000586435 C5orf47Q569G3 176 aa5.35□□□□□ -1.55
LIG3-209ENST00000586435 HCG22E2RYF7 251 aa5.34□□□□□ -1.55
LIG3-209ENST00000586435 CXCL6P80162 114 aa5.34□□□□□ -1.55
LIG3-209ENST00000586435 CASC2Q6XLA1 102 aa5.34□□□□□ -1.55
LIG3-209ENST00000586435 MUC12Q9UKN1 5478 aa5.34□□□□□ -1.55
LIG3-209ENST00000586435 H3BT86 120 aa5.33□□□□□ -1.56
LIG3-209ENST00000586435 KRTAP10-5P60370 271 aa5.32□□□□□ -1.56
LIG3-209ENST00000586435 CSAG1Q6PB30 78 aa5.31□□□□□ -1.56
LIG3-209ENST00000586435 Q8N9L7 120 aa5.31□□□□□ -1.56
LIG3-209ENST00000586435 KRTAP3-1Q9BYR8 98 aa5.31□□□□□ -1.56
LIG3-209ENST00000586435 TMA7Q9Y2S6 64 aaKnown RBP5.31□□□□□ -1.56
LIG3-209ENST00000586435 S4R3F8 94 aa5.31□□□□□ -1.56
LIG3-209ENST00000586435 KRTAP5-9P26371 169 aa5.3□□□□□ -1.56
LIG3-209ENST00000586435 KRTAP20-1Q3LI63 56 aa5.3□□□□□ -1.56
LIG3-209ENST00000586435 LCA10Q71F78 164 aa5.27□□□□□ -1.57
LIG3-209ENST00000586435 KLKP1Q107X0 134 aa5.26□□□□□ -1.57
LIG3-209ENST00000586435 C1orf64Q8NEQ6 169 aa5.26□□□□□ -1.57
LIG3-209ENST00000586435 TSTD3H0UI37 97 aa5.24□□□□□ -1.57
LIG3-209ENST00000586435 C9orf118A6NHY6 69 aa5.23□□□□□ -1.57
LIG3-209ENST00000586435 A0A1W2PPM0 123 aa5.22□□□□□ -1.57
LIG3-209ENST00000586435 SMIM6P0DI80 62 aa5.21□□□□□ -1.58
LIG3-209ENST00000586435 BATFQ16520 125 aa5.21□□□□□ -1.58
LIG3-209ENST00000586435 TAX1BP3O14907 124 aa5.19□□□□□ -1.58
LIG3-209ENST00000586435 CRIPTQ9P021 101 aa5.19□□□□□ -1.58
LIG3-209ENST00000586435 KMT2DO14686 5537 aa5.19□□□□□ -1.58
LIG3-209ENST00000586435 UBL5Q9BZL1 73 aa5.18□□□□□ -1.58
LIG3-209ENST00000586435 TP53AIP1Q9HCN2 124 aa5.18□□□□□ -1.58
LIG3-209ENST00000586435 IMUPQ9GZP8 106 aa5.15□□□□□ -1.59
LIG3-209ENST00000586435 MDN1Q9NU22 5596 aa5.14□□□□□ -1.59
LIG3-209ENST00000586435 SPCS1Q9Y6A9 102 aa5.12□□□□□ -1.59
LIG3-209ENST00000586435 KRTAP2-3P0C7H8 128 aa5.1□□□□□ -1.59
LIG3-209ENST00000586435 KRTAP2-4Q9BYR9 128 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms