RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 ZCCHC13Q8WW36 166 aaKnown RBP3.99□□□□□ -1.77
SMG6-217ENST00000575338 A0A087X002 238 aa3.98□□□□□ -1.77
SMG6-217ENST00000575338 A0A1B0GVY2 172 aa3.98□□□□□ -1.77
SMG6-217ENST00000575338 NDUFS5O43920 106 aa3.98□□□□□ -1.77
SMG6-217ENST00000575338 SPANXA2-OT1Q8N9U9 137 aa3.98□□□□□ -1.77
SMG6-217ENST00000575338 LINC00208Q96KT6 92 aa3.98□□□□□ -1.77
SMG6-217ENST00000575338 DNAH5Q8TE73 4624 aa3.98□□□□□ -1.77
SMG6-217ENST00000575338 PKD1P98161 4303 aa3.97□□□□□ -1.77
SMG6-217ENST00000575338 KRTAP1-4P0C5Y4 121 aa3.97□□□□□ -1.77
SMG6-217ENST00000575338 KRTAP13-2Q52LG2 175 aa3.97□□□□□ -1.77
SMG6-217ENST00000575338 C1orf64Q8NEQ6 169 aa3.97□□□□□ -1.77
SMG6-217ENST00000575338 SACSQ9NZJ4 4579 aa3.96□□□□□ -1.78
SMG6-217ENST00000575338 SRRM2Q9UQ35 2752 aaKnown RBP3.96□□□□□ -1.78
SMG6-217ENST00000575338 DNAH11Q96DT5 4516 aa3.96□□□□□ -1.78
SMG6-217ENST00000575338 BIRC6Q9NR09 4857 aa3.96□□□□□ -1.78
SMG6-217ENST00000575338 SMIM26A0A096LP01 95 aa3.95□□□□□ -1.78
SMG6-217ENST00000575338 LINC00313P59037 77 aa3.95□□□□□ -1.78
SMG6-217ENST00000575338 LINC00304Q8N9R0 145 aa3.95□□□□□ -1.78
SMG6-217ENST00000575338 CYP4F30PQ9H0H9 118 aa3.95□□□□□ -1.78
SMG6-217ENST00000575338 FAT2Q9NYQ8 4349 aa3.94□□□□□ -1.78
SMG6-217ENST00000575338 LOC101927531A0A1B0GV80 90 aa3.94□□□□□ -1.78
SMG6-217ENST00000575338 FAM229AH3BQW9 127 aa3.94□□□□□ -1.78
SMG6-217ENST00000575338 RYR2Q92736 4967 aa3.93□□□□□ -1.78
SMG6-217ENST00000575338 C1orf195Q5TG92 126 aa3.93□□□□□ -1.78
SMG6-217ENST00000575338 HYDINQ4G0P3 5121 aa3.93□□□□□ -1.78
SMG6-217ENST00000575338 Q8N9P0 234 aaPredicted RBP3.91□□□□□ -1.78
SMG6-217ENST00000575338 EPPK1P58107 5090 aaKnown RBP3.91□□□□□ -1.78
SMG6-217ENST00000575338 SMR3BP02814 79 aaPredicted RBP3.9□□□□□ -1.79
SMG6-217ENST00000575338 IGLV7-46A0A075B6I9 117 aa3.89□□□□□ -1.79
SMG6-217ENST00000575338 PRR26Q8N8Z3 221 aa3.89□□□□□ -1.79
SMG6-217ENST00000575338 V9GYY9 64 aa3.89□□□□□ -1.79
SMG6-217ENST00000575338 KRTAP17-1Q9BYP8 105 aa3.87□□□□□ -1.79
SMG6-217ENST00000575338 VPS13BQ7Z7G8 4022 aa3.86□□□□□ -1.79
SMG6-217ENST00000575338 OXTP01178 125 aa3.86□□□□□ -1.79
SMG6-217ENST00000575338 NOTCH2NLQ7Z3S9 236 aa3.86□□□□□ -1.79
SMG6-217ENST00000575338 KRTAP10-4P60372 401 aaPredicted RBP3.85□□□□□ -1.79
SMG6-217ENST00000575338 LRP1BQ9NZR2 4599 aa3.85□□□□□ -1.79
SMG6-217ENST00000575338 KRTAP16-1A8MUX0 517 aa3.84□□□□□ -1.79
SMG6-217ENST00000575338 PCOTHQ58A44 107 aa3.84□□□□□ -1.79
SMG6-217ENST00000575338 PRR4Q16378 134 aa3.83□□□□□ -1.8
SMG6-217ENST00000575338 KRTAP13-3Q3SY46 172 aa3.83□□□□□ -1.8
SMG6-217ENST00000575338 IGKV2-30P06310 120 aa3.82□□□□□ -1.8
SMG6-217ENST00000575338 ACYP2P14621 99 aa3.82□□□□□ -1.8
SMG6-217ENST00000575338 Q1T7F1 81 aa3.82□□□□□ -1.8
SMG6-217ENST00000575338 Q5VSD8 79 aa3.82□□□□□ -1.8
SMG6-217ENST00000575338 Q5W150 140 aa3.82□□□□□ -1.8
SMG6-217ENST00000575338 PKHD1P08F94 4074 aa3.81□□□□□ -1.8
SMG6-217ENST00000575338 FP248Q71RG6 208 aaPredicted RBP3.81□□□□□ -1.8
SMG6-217ENST00000575338 C7orf65Q6ZTY9 151 aa3.8□□□□□ -1.8
SMG6-217ENST00000575338 COA5Q86WW8 74 aa3.8□□□□□ -1.8
SMG6-217ENST00000575338 DYNC1H1Q14204 4646 aaKnown RBP3.8□□□□□ -1.8
SMG6-217ENST00000575338 MPLKIPQ8TAP9 179 aa3.79□□□□□ -1.8
SMG6-217ENST00000575338 C4orf26Q17RF5 130 aa3.78□□□□□ -1.8
SMG6-217ENST00000575338 DMAC1Q96GE9 116 aa3.78□□□□□ -1.8
SMG6-217ENST00000575338 C20orf166-AS1Q96NR2 134 aa3.78□□□□□ -1.8
SMG6-217ENST00000575338 APOBP04114 4563 aaKnown RBP3.77□□□□□ -1.81
SMG6-217ENST00000575338 HERC2O95714 4834 aa3.77□□□□□ -1.81
SMG6-217ENST00000575338 A8MUN3 132 aa3.77□□□□□ -1.81
SMG6-217ENST00000575338 A8MUU9 505 aa3.77□□□□□ -1.81
SMG6-217ENST00000575338 CHKB-CPT1BH3BT56 60 aa3.77□□□□□ -1.81
SMG6-217ENST00000575338 HRES1P13985 223 aa3.77□□□□□ -1.81
SMG6-217ENST00000575338 IGKV2D-30A0A075B6S6 120 aa3.76□□□□□ -1.81
SMG6-217ENST00000575338 KRTAP10-8P60410 259 aa3.76□□□□□ -1.81
SMG6-217ENST00000575338 PKHD1L1Q86WI1 4243 aa3.75□□□□□ -1.81
SMG6-217ENST00000575338 Q75L30 129 aa3.75□□□□□ -1.81
SMG6-217ENST00000575338 Q8N1X5 172 aa3.75□□□□□ -1.81
SMG6-217ENST00000575338 RETNLBQ9BQ08 111 aa3.75□□□□□ -1.81
SMG6-217ENST00000575338 C9orf92A6NGG3 77 aa3.73□□□□□ -1.81
SMG6-217ENST00000575338 SPTSSBQ8NFR3 76 aa3.73□□□□□ -1.81
SMG6-217ENST00000575338 PRR15LQ9BU68 103 aa3.72□□□□□ -1.81
SMG6-217ENST00000575338 ATP11AUNQ6ZP68 121 aa3.71□□□□□ -1.82
SMG6-217ENST00000575338 LINC01558Q9Y6Z2 57 aa3.71□□□□□ -1.82
SMG6-217ENST00000575338 RYR1P21817 5038 aa3.71□□□□□ -1.82
SMG6-217ENST00000575338 SVIPQ8NHG7 77 aa3.7□□□□□ -1.82
SMG6-217ENST00000575338 PCLOQ9Y6V0 5065 aa3.7□□□□□ -1.82
SMG6-217ENST00000575338 FLG2Q5D862 2391 aaPredicted RBP3.69□□□□□ -1.82
SMG6-217ENST00000575338 PSPHP1O15172 72 aa3.69□□□□□ -1.82
SMG6-217ENST00000575338 PRO0628Q9UI54 55 aa3.69□□□□□ -1.82
SMG6-217ENST00000575338 KIAA1109Q2LD37 5005 aa3.69□□□□□ -1.82
SMG6-217ENST00000575338 BRK1Q8WUW1 75 aa3.68□□□□□ -1.82
SMG6-217ENST00000575338 FAT1Q14517 4588 aa3.67□□□□□ -1.82
SMG6-217ENST00000575338 RPL37P61927 97 aaKnown RBP3.67□□□□□ -1.82
SMG6-217ENST00000575338 SPINK7P58062 85 aa3.66□□□□□ -1.82
SMG6-217ENST00000575338 Q5VV11 94 aa3.66□□□□□ -1.82
SMG6-217ENST00000575338 SEC61GP60059 68 aa3.65□□□□□ -1.83
SMG6-217ENST00000575338 A0A1B0GU69 56 aa3.64□□□□□ -1.83
SMG6-217ENST00000575338 A6NED7 52 aa3.64□□□□□ -1.83
SMG6-217ENST00000575338 HSPG2P98160 4391 aa3.64□□□□□ -1.83
SMG6-217ENST00000575338 MT1HL1P0DM35 61 aa3.63□□□□□ -1.83
SMG6-217ENST00000575338 TPRXLQ17RH7 258 aa3.63□□□□□ -1.83
SMG6-217ENST00000575338 XP32Q5T750 250 aa3.62□□□□□ -1.83
SMG6-217ENST00000575338 COX6B2Q6YFQ2 88 aa3.62□□□□□ -1.83
SMG6-217ENST00000575338 TNXBP22105 4242 aa3.61□□□□□ -1.83
SMG6-217ENST00000575338 KRTAP4-5Q9BYR2 181 aa3.6□□□□□ -1.83
SMG6-217ENST00000575338 CDC42SE1Q9NRR8 79 aa3.6□□□□□ -1.83
SMG6-217ENST00000575338 FAT3Q8TDW7 4589 aa3.58□□□□□ -1.84
SMG6-217ENST00000575338 UQCR11O14957 56 aa3.58□□□□□ -1.84
SMG6-217ENST00000575338 ABCA13Q86UQ4 5058 aa3.58□□□□□ -1.84
SMG6-217ENST00000575338 DMBT1Q9UGM3 2413 aaPredicted RBP3.57□□□□□ -1.84
SMG6-217ENST00000575338 J3QL48 77 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms