RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 DSCR8Q96T75 97 aa5.13□□□□□ -1.59
VPS35-211ENST00000569950 LINC00472Q9H8W2 130 aa5.13□□□□□ -1.59
VPS35-211ENST00000569950 MUC17Q685J3 4493 aa5.11□□□□□ -1.59
VPS35-211ENST00000569950 F8W1H4 67 aa5.11□□□□□ -1.59
VPS35-211ENST00000569950 PDE6GP18545 87 aa5.09□□□□□ -1.59
VPS35-211ENST00000569950 ETDBQ3ZM63 59 aa5.09□□□□□ -1.59
VPS35-211ENST00000569950 VPS25Q9BRG1 176 aa5.09□□□□□ -1.59
VPS35-211ENST00000569950 SS18L2Q9UHA2 77 aa5.09□□□□□ -1.59
VPS35-211ENST00000569950 A0A1B0GW54 56 aa5.07□□□□□ -1.6
VPS35-211ENST00000569950 RNF213Q63HN8 5207 aa5.06□□□□□ -1.6
VPS35-211ENST00000569950 DEFB116Q30KQ4 102 aa5.06□□□□□ -1.6
VPS35-211ENST00000569950 C9orf92A6NGG3 77 aa5.04□□□□□ -1.6
VPS35-211ENST00000569950 NOTCH2NLQ7Z3S9 236 aa5.04□□□□□ -1.6
VPS35-211ENST00000569950 PCP4P48539 62 aa5.03□□□□□ -1.6
VPS35-211ENST00000569950 KRTAP16-1A8MUX0 517 aa5.02□□□□□ -1.61
VPS35-211ENST00000569950 IGKV4-1P06312 121 aa5.02□□□□□ -1.61
VPS35-211ENST00000569950 LINC00846Q9NV44 126 aa5.02□□□□□ -1.61
VPS35-211ENST00000569950 DSCR10P59022 87 aa5.01□□□□□ -1.61
VPS35-211ENST00000569950 CDIP1Q9H305 208 aa5.01□□□□□ -1.61
VPS35-211ENST00000569950 MUC2Q02817 5179 aa5.01□□□□□ -1.61
VPS35-211ENST00000569950 Q6ZVQ6 151 aa5□□□□□ -1.61
VPS35-211ENST00000569950 SIGMAR1Q99720 223 aa5□□□□□ -1.61
VPS35-211ENST00000569950 KRTAP4-1Q9BYQ7 146 aa5□□□□□ -1.61
VPS35-211ENST00000569950 IGKV3D-7A0A0C4DH55 119 aa4.99□□□□□ -1.61
VPS35-211ENST00000569950 A0A1B0GVX0 72 aa4.98□□□□□ -1.61
VPS35-211ENST00000569950 A8MWP4 228 aa4.97□□□□□ -1.61
VPS35-211ENST00000569950 J3KT08 172 aa4.97□□□□□ -1.61
VPS35-211ENST00000569950 NREPQ16612 68 aa4.97□□□□□ -1.61
VPS35-211ENST00000569950 KRTAP4-7Q9BYR0 210 aa4.97□□□□□ -1.61
VPS35-211ENST00000569950 A8MUU9 505 aa4.96□□□□□ -1.62
VPS35-211ENST00000569950 RPL37P61927 97 aaKnown RBP4.96□□□□□ -1.62
VPS35-211ENST00000569950 C20orf166-AS1Q96NR2 134 aa4.96□□□□□ -1.62
VPS35-211ENST00000569950 IGHV6-1A0A0B4J1U7 121 aa4.95□□□□□ -1.62
VPS35-211ENST00000569950 K7EQZ3 153 aa4.95□□□□□ -1.62
VPS35-211ENST00000569950 FAM240AA0A1B0GVK7 77 aa4.94□□□□□ -1.62
VPS35-211ENST00000569950 LINC00313P59037 77 aa4.94□□□□□ -1.62
VPS35-211ENST00000569950 Q75L30 129 aa4.94□□□□□ -1.62
VPS35-211ENST00000569950 PRR15Q8IV56 129 aa4.94□□□□□ -1.62
VPS35-211ENST00000569950 MMP24-AS1A0A0U1RRL7 71 aa4.93□□□□□ -1.62
VPS35-211ENST00000569950 Q8N9L7 120 aa4.93□□□□□ -1.62
VPS35-211ENST00000569950 PCOTHQ58A44 107 aa4.92□□□□□ -1.62
VPS35-211ENST00000569950 C8orf17Q9NRJ1 99 aa4.92□□□□□ -1.62
VPS35-211ENST00000569950 C8orf87E5RJ46 101 aa4.91□□□□□ -1.62
VPS35-211ENST00000569950 BPY2O14599 106 aa4.91□□□□□ -1.62
VPS35-211ENST00000569950 ACYP1P07311 99 aa4.9□□□□□ -1.63
VPS35-211ENST00000569950 SEC61BP60468 96 aaKnown RBP4.9□□□□□ -1.63
VPS35-211ENST00000569950 LCE1DQ5T752 114 aa4.9□□□□□ -1.63
VPS35-211ENST00000569950 UBL5Q9BZL1 73 aa4.9□□□□□ -1.63
VPS35-211ENST00000569950 FAT4Q6V0I7 4981 aa4.89□□□□□ -1.63
VPS35-211ENST00000569950 Q8N9P0 234 aaPredicted RBP4.89□□□□□ -1.63
VPS35-211ENST00000569950 H3BS24 57 aa4.88□□□□□ -1.63
VPS35-211ENST00000569950 NDUFB1O75438 58 aa4.88□□□□□ -1.63
VPS35-211ENST00000569950 KRTAP19-2Q3LHN2 52 aa4.88□□□□□ -1.63
VPS35-211ENST00000569950 CXCL6P80162 114 aa4.87□□□□□ -1.63
VPS35-211ENST00000569950 TMEM254Q8TBM7 123 aa4.86□□□□□ -1.63
VPS35-211ENST00000569950 hDV103S1A0JD37 113 aa4.83□□□□□ -1.64
VPS35-211ENST00000569950 MRPL34Q9BQ48 92 aaKnown RBP4.83□□□□□ -1.64
VPS35-211ENST00000569950 LINC00643Q86TS7 51 aa4.82□□□□□ -1.64
VPS35-211ENST00000569950 WFDC13Q8IUB5 93 aa4.82□□□□□ -1.64
VPS35-211ENST00000569950 HCG22E2RYF7 251 aa4.81□□□□□ -1.64
VPS35-211ENST00000569950 ATP5EP2Q5VTU8 51 aa4.81□□□□□ -1.64
VPS35-211ENST00000569950 CASC2Q6XLA1 102 aa4.81□□□□□ -1.64
VPS35-211ENST00000569950 ATP11AUNQ6ZP68 121 aa4.81□□□□□ -1.64
VPS35-211ENST00000569950 ZCCHC13Q8WW36 166 aaKnown RBP4.81□□□□□ -1.64
VPS35-211ENST00000569950 KRTAP4-9Q9BYQ8 210 aa4.81□□□□□ -1.64
VPS35-211ENST00000569950 Q5W150 140 aa4.8□□□□□ -1.64
VPS35-211ENST00000569950 FLGP20930 4061 aaPredicted RBP4.79□□□□□ -1.64
VPS35-211ENST00000569950 J3QR89 54 aa4.78□□□□□ -1.64
VPS35-211ENST00000569950 A0A087WVE0 104 aa4.77□□□□□ -1.65
VPS35-211ENST00000569950 MPLKIPQ8TAP9 179 aa4.77□□□□□ -1.65
VPS35-211ENST00000569950 KRTAP4-2Q9BYR5 136 aa4.77□□□□□ -1.65
VPS35-211ENST00000569950 HRES1P13985 223 aa4.76□□□□□ -1.65
VPS35-211ENST00000569950 K7ERU9 68 aa4.75□□□□□ -1.65
VPS35-211ENST00000569950 MT-ATP8P03928 68 aa4.73□□□□□ -1.65
VPS35-211ENST00000569950 HIST1H4AP62805 103 aaKnown RBP4.72□□□□□ -1.65
VPS35-211ENST00000569950 NDUFS5O43920 106 aa4.71□□□□□ -1.66
VPS35-211ENST00000569950 SPINK7P58062 85 aa4.71□□□□□ -1.66
VPS35-211ENST00000569950 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
VPS35-211ENST00000569950 MT1HP80294 61 aa4.69□□□□□ -1.66
VPS35-211ENST00000569950 OCR1Q9BZK8 76 aa4.68□□□□□ -1.66
VPS35-211ENST00000569950 TP53AIP1Q9HCN2 124 aa4.67□□□□□ -1.66
VPS35-211ENST00000569950 KRTAP19-4Q3LI73 84 aa4.66□□□□□ -1.66
VPS35-211ENST00000569950 IMUPQ9GZP8 106 aa4.66□□□□□ -1.66
VPS35-211ENST00000569950 IGKV2-30P06310 120 aa4.65□□□□□ -1.67
VPS35-211ENST00000569950 A0A0U1RQV1 116 aa4.64□□□□□ -1.67
VPS35-211ENST00000569950 IGKV2D-30A0A075B6S6 120 aa4.63□□□□□ -1.67
VPS35-211ENST00000569950 C7orf65Q6ZTY9 151 aa4.63□□□□□ -1.67
VPS35-211ENST00000569950 TRAV22A0A0B4J277 110 aa4.62□□□□□ -1.67
VPS35-211ENST00000569950 UQCRQO14949 82 aa4.62□□□□□ -1.67
VPS35-211ENST00000569950 KRTAP9-7A8MTY7 169 aa4.61□□□□□ -1.67
VPS35-211ENST00000569950 KRTAP3-1Q9BYR8 98 aa4.61□□□□□ -1.67
VPS35-211ENST00000569950 CYP4F30PQ9H0H9 118 aa4.6□□□□□ -1.67
VPS35-211ENST00000569950 FAM236AA0A1B0GUQ0 79 aa4.59□□□□□ -1.67
VPS35-211ENST00000569950 FAM236BA0A1B0GV22 79 aa4.59□□□□□ -1.67
VPS35-211ENST00000569950 SCGB1A1P11684 91 aa4.59□□□□□ -1.67
VPS35-211ENST00000569950 COX6B2Q6YFQ2 88 aa4.59□□□□□ -1.67
VPS35-211ENST00000569950 KRTAP4-11Q9BYQ6 195 aa4.59□□□□□ -1.67
VPS35-211ENST00000569950 H0Y9P7 68 aa4.58□□□□□ -1.68
VPS35-211ENST00000569950 C4orf26Q17RF5 130 aa4.57□□□□□ -1.68
VPS35-211ENST00000569950 RBM12B-AS1Q9P1G2 102 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms