RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 C10orf95Q9H7T3 257 aa2.37□□□□□ -2.03
UBR1-208ENST00000569066 ZNF462Q96JM2 2506 aa2.36□□□□□ -2.03
UBR1-208ENST00000569066 DEFB132Q7Z7B7 95 aa2.35□□□□□ -2.03
UBR1-208ENST00000569066 KRTAP13-4Q3LI77 160 aa2.35□□□□□ -2.03
UBR1-208ENST00000569066 GVQW2A0A096LPI5 108 aaPredicted RBP2.33□□□□□ -2.04
UBR1-208ENST00000569066 LY6G6CO95867 125 aa2.33□□□□□ -2.04
UBR1-208ENST00000569066 DEFB109BQ30KR1 87 aa2.33□□□□□ -2.04
UBR1-208ENST00000569066 CSMD3Q7Z407 3707 aa2.33□□□□□ -2.04
UBR1-208ENST00000569066 SPG11Q96JI7 2443 aa2.33□□□□□ -2.04
UBR1-208ENST00000569066 DEFB136Q30KP8 78 aa2.32□□□□□ -2.04
UBR1-208ENST00000569066 Q6ZRN7 208 aaPredicted RBP2.32□□□□□ -2.04
UBR1-208ENST00000569066 VWFP04275 2813 aa2.32□□□□□ -2.04
UBR1-208ENST00000569066 NBPF19A0A087WUL8 3843 aa2.32□□□□□ -2.04
UBR1-208ENST00000569066 OTOGLQ3ZCN5 2332 aa2.31□□□□□ -2.04
UBR1-208ENST00000569066 CSMD2Q7Z408 3487 aa2.31□□□□□ -2.04
UBR1-208ENST00000569066 CUBNO60494 3623 aa2.31□□□□□ -2.04
UBR1-208ENST00000569066 CACNA1HO95180 2353 aa2.31□□□□□ -2.04
UBR1-208ENST00000569066 DEFB130BP0DP73 79 aa2.3□□□□□ -2.04
UBR1-208ENST00000569066 DEFB130AP0DP74 79 aa2.3□□□□□ -2.04
UBR1-208ENST00000569066 CSPG4Q6UVK1 2322 aa2.3□□□□□ -2.04
UBR1-208ENST00000569066 F8P00451 2351 aa2.3□□□□□ -2.04
UBR1-208ENST00000569066 LYNX1P0DP58 116 aa2.3□□□□□ -2.04
UBR1-208ENST00000569066 DEFB119Q8N690 84 aa2.3□□□□□ -2.04
UBR1-208ENST00000569066 DCHS2Q6V1P9 2916 aa2.3□□□□□ -2.04
UBR1-208ENST00000569066 APCP25054 2843 aa2.29□□□□□ -2.04
UBR1-208ENST00000569066 DEFB131AP59861 70 aa2.29□□□□□ -2.04
UBR1-208ENST00000569066 KRTAP12-4P60329 112 aa2.29□□□□□ -2.04
UBR1-208ENST00000569066 USMG5Q96IX5 58 aa2.29□□□□□ -2.04
UBR1-208ENST00000569066 NOP10Q9NPE3 64 aaKnown RBP2.29□□□□□ -2.04
UBR1-208ENST00000569066 SPRR1AP35321 89 aa2.28□□□□□ -2.04
UBR1-208ENST00000569066 MRPL34Q9BQ48 92 aaKnown RBP2.28□□□□□ -2.05
UBR1-208ENST00000569066 MUC6Q6W4X9 2439 aa2.27□□□□□ -2.05
UBR1-208ENST00000569066 TTC28Q96AY4 2481 aa2.27□□□□□ -2.05
UBR1-208ENST00000569066 TEX15Q9BXT5 2789 aa2.27□□□□□ -2.05
UBR1-208ENST00000569066 JMJD1CQ15652 2540 aa2.26□□□□□ -2.05
UBR1-208ENST00000569066 CEP290O15078 2479 aa2.25□□□□□ -2.05
UBR1-208ENST00000569066 H1FX-AS1Q4G0G2 97 aa2.25□□□□□ -2.05
UBR1-208ENST00000569066 PTPN13Q12923 2485 aa2.24□□□□□ -2.05
UBR1-208ENST00000569066 A0A096LPF7 62 aa2.24□□□□□ -2.05
UBR1-208ENST00000569066 H3BUA1 57 aa2.24□□□□□ -2.05
UBR1-208ENST00000569066 U3KQA8 63 aa2.24□□□□□ -2.05
UBR1-208ENST00000569066 UTP20O75691 2785 aaKnown RBP2.24□□□□□ -2.05
UBR1-208ENST00000569066 SPINK1P00995 79 aa2.24□□□□□ -2.05
UBR1-208ENST00000569066 SPTAN1Q13813 2472 aaKnown RBP2.23□□□□□ -2.05
UBR1-208ENST00000569066 C10orf99Q6UWK7 81 aa2.23□□□□□ -2.05
UBR1-208ENST00000569066 NCOR2Q9Y618 2525 aa2.23□□□□□ -2.05
UBR1-208ENST00000569066 SONP18583 2426 aaKnown RBP2.23□□□□□ -2.05
UBR1-208ENST00000569066 PRLHP81277 87 aa2.21□□□□□ -2.06
UBR1-208ENST00000569066 DMBT1Q9UGM3 2413 aaPredicted RBP2.21□□□□□ -2.06
UBR1-208ENST00000569066 CCDC168Q8NDH2 2452 aa2.21□□□□□ -2.06
UBR1-208ENST00000569066 TLN1Q9Y490 2541 aaKnown RBP2.21□□□□□ -2.06
UBR1-208ENST00000569066 PLAC4Q8WY50 150 aa2.21□□□□□ -2.06
UBR1-208ENST00000569066 FAM208BQ5VWN6 2430 aa2.2□□□□□ -2.06
UBR1-208ENST00000569066 ABCA2Q9BZC7 2435 aa2.2□□□□□ -2.06
UBR1-208ENST00000569066 VPS13CQ709C8 3753 aa2.2□□□□□ -2.06
UBR1-208ENST00000569066 MEGF8Q7Z7M0 2845 aa2.2□□□□□ -2.06
UBR1-208ENST00000569066 USP9XQ93008 2570 aaPredicted RBP2.2□□□□□ -2.06
UBR1-208ENST00000569066 A0A096LNI7 61 aa2.19□□□□□ -2.06
UBR1-208ENST00000569066 HIVEP3Q5T1R4 2406 aa2.19□□□□□ -2.06
UBR1-208ENST00000569066 NBEAL2Q6ZNJ1 2754 aa2.19□□□□□ -2.06
UBR1-208ENST00000569066 J3QKU1 62 aa2.19□□□□□ -2.06
UBR1-208ENST00000569066 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
UBR1-208ENST00000569066 RPL37P61927 97 aaKnown RBP2.19□□□□□ -2.06
UBR1-208ENST00000569066 HECTD1Q9ULT8 2610 aa2.18□□□□□ -2.06
UBR1-208ENST00000569066 COX6B2Q6YFQ2 88 aa2.18□□□□□ -2.06
UBR1-208ENST00000569066 ANKHD1Q8IWZ3 2542 aaKnown RBP2.18□□□□□ -2.06
UBR1-208ENST00000569066 ABCA12Q86UK0 2595 aa2.18□□□□□ -2.06
UBR1-208ENST00000569066 BSNQ9UPA5 3926 aa2.18□□□□□ -2.06
UBR1-208ENST00000569066 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
UBR1-208ENST00000569066 PKD1L2Q7Z442 2459 aa2.17□□□□□ -2.06
UBR1-208ENST00000569066 PDZD2O15018 2839 aa2.17□□□□□ -2.06
UBR1-208ENST00000569066 C4orf3Q8WVX3 66 aa2.17□□□□□ -2.06
UBR1-208ENST00000569066 SETD2Q9BYW2 2564 aaPredicted RBP2.16□□□□□ -2.06
UBR1-208ENST00000569066 SPRR1BP22528 89 aa2.16□□□□□ -2.06
UBR1-208ENST00000569066 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
UBR1-208ENST00000569066 UNC79Q9P2D8 2635 aa2.16□□□□□ -2.06
UBR1-208ENST00000569066 BDP1A6H8Y1 2624 aa2.15□□□□□ -2.06
UBR1-208ENST00000569066 PRO0255Q9UI72 69 aa2.15□□□□□ -2.06
UBR1-208ENST00000569066 ZFYVE26Q68DK2 2539 aa2.14□□□□□ -2.07
UBR1-208ENST00000569066 TLN2Q9Y4G6 2542 aa2.13□□□□□ -2.07
UBR1-208ENST00000569066 NIPBLQ6KC79 2804 aaeCLIP2.13□□□□□ -2.07
UBR1-208ENST00000569066 SETXQ7Z333 2677 aaKnown RBP2.13□□□□□ -2.07
UBR1-208ENST00000569066 H3BUX3 64 aa2.12□□□□□ -2.07
UBR1-208ENST00000569066 MTORP42345 2549 aa2.12□□□□□ -2.07
UBR1-208ENST00000569066 A0A0D9SG42 100 aa2.12□□□□□ -2.07
UBR1-208ENST00000569066 MXRA5Q9NR99 2828 aa2.11□□□□□ -2.07
UBR1-208ENST00000569066 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
UBR1-208ENST00000569066 TRRAPQ9Y4A5 3859 aa2.11□□□□□ -2.07
UBR1-208ENST00000569066 HRNRQ86YZ3 2850 aaPredicted RBP2.1□□□□□ -2.07
UBR1-208ENST00000569066 NBEAL1Q6ZS30 2694 aa2.1□□□□□ -2.07
UBR1-208ENST00000569066 COL7A1Q02388 2944 aa2.1□□□□□ -2.07
UBR1-208ENST00000569066 S4R3F8 94 aa2.1□□□□□ -2.07
UBR1-208ENST00000569066 CHD8Q9HCK8 2581 aa2.1□□□□□ -2.07
UBR1-208ENST00000569066 UBE2DNLQ8IWF7 75 aa2.09□□□□□ -2.07
UBR1-208ENST00000569066 APLNQ9ULZ1 77 aa2.09□□□□□ -2.07
UBR1-208ENST00000569066 USP9YO00507 2555 aaPredicted RBP2.09□□□□□ -2.07
UBR1-208ENST00000569066 LRRK2Q5S007 2527 aa2.09□□□□□ -2.08
UBR1-208ENST00000569066 HELZ2Q9BYK8 2649 aaKnown RBP2.09□□□□□ -2.08
UBR1-208ENST00000569066 INE1O15225 51 aa2.08□□□□□ -2.08
UBR1-208ENST00000569066 GCN1Q92616 2671 aaKnown RBP2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms