RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 LINC00472Q9H8W2 130 aa7.57□□□□□ -1.2
CLK3-218ENST00000566926 MT-ATP8P03928 68 aa7.53□□□□□ -1.2
CLK3-218ENST00000566926 IGKV3D-7A0A0C4DH55 119 aa7.52□□□□□ -1.21
CLK3-218ENST00000566926 KRTAP13-3Q3SY46 172 aa7.52□□□□□ -1.21
CLK3-218ENST00000566926 NDUFB1O75438 58 aa7.51□□□□□ -1.21
CLK3-218ENST00000566926 A8MWP4 228 aa7.5□□□□□ -1.21
CLK3-218ENST00000566926 Q96NJ1 140 aa7.5□□□□□ -1.21
CLK3-218ENST00000566926 IGKV4-1P06312 121 aa7.49□□□□□ -1.21
CLK3-218ENST00000566926 A0A0U1RQV1 116 aa7.48□□□□□ -1.21
CLK3-218ENST00000566926 DSCR10P59022 87 aa7.48□□□□□ -1.21
CLK3-218ENST00000566926 HIST1H4AP62805 103 aaKnown RBP7.48□□□□□ -1.21
CLK3-218ENST00000566926 C1orf195Q5TG92 126 aa7.47□□□□□ -1.21
CLK3-218ENST00000566926 PRR15Q8IV56 129 aa7.46□□□□□ -1.22
CLK3-218ENST00000566926 DEFB116Q30KQ4 102 aa7.45□□□□□ -1.22
CLK3-218ENST00000566926 K7EQZ3 153 aa7.43□□□□□ -1.22
CLK3-218ENST00000566926 SCGB1A1P11684 91 aa7.43□□□□□ -1.22
CLK3-218ENST00000566926 SEC61BP60468 96 aaKnown RBP7.43□□□□□ -1.22
CLK3-218ENST00000566926 A0A1B0GVX0 72 aa7.42□□□□□ -1.22
CLK3-218ENST00000566926 C8orf87E5RJ46 101 aa7.4□□□□□ -1.22
CLK3-218ENST00000566926 Q8N9L7 120 aa7.4□□□□□ -1.22
CLK3-218ENST00000566926 HCG22E2RYF7 251 aa7.39□□□□□ -1.23
CLK3-218ENST00000566926 XP32Q5T750 250 aa7.39□□□□□ -1.23
CLK3-218ENST00000566926 MUC2Q02817 5179 aa7.39□□□□□ -1.23
CLK3-218ENST00000566926 MUC17Q685J3 4493 aa7.38□□□□□ -1.23
CLK3-218ENST00000566926 A0A087WVE0 104 aa7.37□□□□□ -1.23
CLK3-218ENST00000566926 IGHV6-1A0A0B4J1U7 121 aa7.37□□□□□ -1.23
CLK3-218ENST00000566926 FAM236AA0A1B0GUQ0 79 aa7.36□□□□□ -1.23
CLK3-218ENST00000566926 FAM236BA0A1B0GV22 79 aa7.36□□□□□ -1.23
CLK3-218ENST00000566926 C9orf92A6NGG3 77 aa7.35□□□□□ -1.23
CLK3-218ENST00000566926 C8orf17Q9NRJ1 99 aa7.35□□□□□ -1.23
CLK3-218ENST00000566926 ATOX1O00244 68 aa7.34□□□□□ -1.23
CLK3-218ENST00000566926 SMIM20Q8N5G0 67 aa7.34□□□□□ -1.23
CLK3-218ENST00000566926 MMP24-AS1A0A0U1RRL7 71 aa7.33□□□□□ -1.24
CLK3-218ENST00000566926 hDV103S1A0JD37 113 aa7.33□□□□□ -1.24
CLK3-218ENST00000566926 LINC00313P59037 77 aa7.33□□□□□ -1.24
CLK3-218ENST00000566926 CASC2Q6XLA1 102 aa7.33□□□□□ -1.24
CLK3-218ENST00000566926 TMEM254Q8TBM7 123 aa7.31□□□□□ -1.24
CLK3-218ENST00000566926 WFDC13Q8IUB5 93 aa7.29□□□□□ -1.24
CLK3-218ENST00000566926 MRPL34Q9BQ48 92 aaKnown RBP7.28□□□□□ -1.24
CLK3-218ENST00000566926 TP53AIP1Q9HCN2 124 aa7.26□□□□□ -1.25
CLK3-218ENST00000566926 PCOTHQ58A44 107 aa7.24□□□□□ -1.25
CLK3-218ENST00000566926 NOTCH2NLQ7Z3S9 236 aa7.24□□□□□ -1.25
CLK3-218ENST00000566926 ANAPC13Q9BS18 74 aa7.23□□□□□ -1.25
CLK3-218ENST00000566926 TRAV7A0A075B6U4 112 aa7.22□□□□□ -1.25
CLK3-218ENST00000566926 RPL37P61927 97 aaKnown RBP7.22□□□□□ -1.25
CLK3-218ENST00000566926 Q8N9P0 234 aaPredicted RBP7.22□□□□□ -1.25
CLK3-218ENST00000566926 KRTAP4-1Q9BYQ7 146 aa7.22□□□□□ -1.25
CLK3-218ENST00000566926 OCR1Q9BZK8 76 aa7.22□□□□□ -1.25
CLK3-218ENST00000566926 KRTAP16-1A8MUX0 517 aa7.21□□□□□ -1.26
CLK3-218ENST00000566926 UQCRQO14949 82 aa7.21□□□□□ -1.26
CLK3-218ENST00000566926 SERP2Q8N6R1 65 aa7.21□□□□□ -1.26
CLK3-218ENST00000566926 NDUFS5O43920 106 aa7.19□□□□□ -1.26
CLK3-218ENST00000566926 LCE2AQ5TA79 106 aaPredicted RBP7.19□□□□□ -1.26
CLK3-218ENST00000566926 FAT4Q6V0I7 4981 aa7.19□□□□□ -1.26
CLK3-218ENST00000566926 C5orf47Q569G3 176 aa7.17□□□□□ -1.26
CLK3-218ENST00000566926 C20orf166-AS1Q96NR2 134 aa7.17□□□□□ -1.26
CLK3-218ENST00000566926 COX7CP15954 63 aa7.15□□□□□ -1.26
CLK3-218ENST00000566926 Q75L30 129 aa7.15□□□□□ -1.26
CLK3-218ENST00000566926 A8MUU9 505 aa7.14□□□□□ -1.27
CLK3-218ENST00000566926 ATP11AUNQ6ZP68 121 aa7.14□□□□□ -1.27
CLK3-218ENST00000566926 H3BPC8 53 aa7.13□□□□□ -1.27
CLK3-218ENST00000566926 MP68P56378 58 aa7.13□□□□□ -1.27
CLK3-218ENST00000566926 TRAV22A0A0B4J277 110 aa7.12□□□□□ -1.27
CLK3-218ENST00000566926 PCP4P48539 62 aa7.1□□□□□ -1.27
CLK3-218ENST00000566926 H0Y9P7 68 aa7.08□□□□□ -1.28
CLK3-218ENST00000566926 ZCCHC13Q8WW36 166 aaKnown RBP7.07□□□□□ -1.28
CLK3-218ENST00000566926 KLKP1Q107X0 134 aa7.05□□□□□ -1.28
CLK3-218ENST00000566926 LOC101927531A0A1B0GV80 90 aa7.04□□□□□ -1.28
CLK3-218ENST00000566926 C20orf197Q8N268 126 aa7.04□□□□□ -1.28
CLK3-218ENST00000566926 NDUFC1O43677 76 aa7.02□□□□□ -1.29
CLK3-218ENST00000566926 KRTAP19-2Q3LHN2 52 aa7.02□□□□□ -1.29
CLK3-218ENST00000566926 LCE2CQ5TA81 110 aa7.02□□□□□ -1.29
CLK3-218ENST00000566926 Q5W150 140 aa7.02□□□□□ -1.29
CLK3-218ENST00000566926 C1orf64Q8NEQ6 169 aa7.02□□□□□ -1.29
CLK3-218ENST00000566926 COX6B2Q6YFQ2 88 aa7.01□□□□□ -1.29
CLK3-218ENST00000566926 LINC00208Q96KT6 92 aa7.01□□□□□ -1.29
CLK3-218ENST00000566926 CCDC179H3BU77 68 aa7□□□□□ -1.29
CLK3-218ENST00000566926 IGKV2-30P06310 120 aa6.96□□□□□ -1.3
CLK3-218ENST00000566926 C7orf65Q6ZTY9 151 aa6.96□□□□□ -1.3
CLK3-218ENST00000566926 SNURFQ9Y675 71 aa6.96□□□□□ -1.3
CLK3-218ENST00000566926 MT1HP80294 61 aa6.95□□□□□ -1.3
CLK3-218ENST00000566926 CYP4F30PQ9H0H9 118 aa6.94□□□□□ -1.3
CLK3-218ENST00000566926 KRTAP9-2Q9BYQ4 174 aa6.93□□□□□ -1.3
CLK3-218ENST00000566926 IGKV2D-30A0A075B6S6 120 aa6.91□□□□□ -1.3
CLK3-218ENST00000566926 M0R2T5 61 aa6.91□□□□□ -1.3
CLK3-218ENST00000566926 H7BZZ5 65 aa6.89□□□□□ -1.31
CLK3-218ENST00000566926 SPINK7P58062 85 aa6.88□□□□□ -1.31
CLK3-218ENST00000566926 TMEM258P61165 79 aa6.87□□□□□ -1.31
CLK3-218ENST00000566926 SPANXA2-OT1Q8N9U9 137 aa6.87□□□□□ -1.31
CLK3-218ENST00000566926 ATP5EP56381 51 aaPredicted RBP6.86□□□□□ -1.31
CLK3-218ENST00000566926 FLGP20930 4061 aaPredicted RBP6.86□□□□□ -1.31
CLK3-218ENST00000566926 CYSTM1Q9H1C7 97 aa6.85□□□□□ -1.31
CLK3-218ENST00000566926 RBM12B-AS1Q9P1G2 102 aa6.84□□□□□ -1.31
CLK3-218ENST00000566926 KRTAP10-6P60371 365 aaPredicted RBP6.82□□□□□ -1.32
CLK3-218ENST00000566926 FAM236DA0A1B0GTK5 79 aa6.81□□□□□ -1.32
CLK3-218ENST00000566926 FAM236CP0DP71 79 aa6.81□□□□□ -1.32
CLK3-218ENST00000566926 LCE2DQ5TA82 110 aaPredicted RBP6.81□□□□□ -1.32
CLK3-218ENST00000566926 HRES1P13985 223 aa6.8□□□□□ -1.32
CLK3-218ENST00000566926 LORP23490 312 aaPredicted RBP6.8□□□□□ -1.32
CLK3-218ENST00000566926 A8MUN3 132 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms