RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-209ENST00000564255 XIRP2A4UGR9 3374 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 DNAH1Q9P2D7 4330 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 FLNCQ14315 2725 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 PLNP26678 52 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 KRTAP21-2Q3LI59 83 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 ABRACLQ9P1F3 81 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 UBR4Q5T4S7 5183 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 CACNA1CQ13936 2221 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 SPINK13Q1W4C9 94 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 DEFB114Q30KQ6 69 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 SSBP3-AS1Q7Z2R9 100 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 KCNQ1DNQ9H478 68 aa0.75□□□□□ -2.29
CHD9-209ENST00000564255 SONP18583 2426 aaKnown RBP0.74□□□□□ -2.29
CHD9-209ENST00000564255 SMIM27A0A1W2PRY6 76 aa0.74□□□□□ -2.29
CHD9-209ENST00000564255 IGIPA6NJ69 53 aa0.74□□□□□ -2.29
CHD9-209ENST00000564255 RPL37P61927 97 aaKnown RBP0.74□□□□□ -2.29
CHD9-209ENST00000564255 ANK2Q01484 3957 aa0.74□□□□□ -2.29
CHD9-209ENST00000564255 FRYLO94915 3013 aa0.74□□□□□ -2.29
CHD9-209ENST00000564255 DEFB108AA8MXU0 73 aa0.74□□□□□ -2.29
CHD9-209ENST00000564255 M0R1W7 72 aa0.74□□□□□ -2.29
CHD9-209ENST00000564255 SERF2P84101 59 aa0.74□□□□□ -2.29
CHD9-209ENST00000564255 SMG1Q96Q15 3661 aaKnown RBP0.73□□□□□ -2.29
CHD9-209ENST00000564255 USF3Q68DE3 2245 aa0.73□□□□□ -2.29
CHD9-209ENST00000564255 AKAP9Q99996 3911 aa0.73□□□□□ -2.29
CHD9-209ENST00000564255 CPSF4LA6NMK7 179 aaKnown RBP0.73□□□□□ -2.29
CHD9-209ENST00000564255 RPL38P63173 70 aaKnown RBP0.73□□□□□ -2.29
CHD9-209ENST00000564255 LRBAP50851 2863 aa0.73□□□□□ -2.29
CHD9-209ENST00000564255 MYO15AQ9UKN7 3530 aa0.73□□□□□ -2.29
CHD9-209ENST00000564255 NBPF19A0A087WUL8 3843 aa0.73□□□□□ -2.29
CHD9-209ENST00000564255 LINC01546A6NGU7 62 aa0.73□□□□□ -2.29
CHD9-209ENST00000564255 I3L3M4 83 aa0.73□□□□□ -2.29
CHD9-209ENST00000564255 K7EIL1 84 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 TRIOO75962 3097 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 MEGF8Q7Z7M0 2845 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 ADGRG4Q8IZF6 3080 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 ANK3Q12955 4377 aaKnown RBP0.72□□□□□ -2.29
CHD9-209ENST00000564255 ETDCA0A1B0GVM5 59 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 TENM1Q9UKZ4 2725 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 RELNP78509 3460 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 ASPMQ8IZT6 3477 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 NBEAL2Q6ZNJ1 2754 aa0.72□□□□□ -2.29
CHD9-209ENST00000564255 UBE2DNLQ8IWF7 75 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 LOC400499M0QZD8 3231 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 NIPBLQ6KC79 2804 aaeCLIP0.71□□□□□ -2.31e-5■□□□□ 11.1
CHD9-209ENST00000564255 FREM2Q5SZK8 3169 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 HYDINQ4G0P3 5121 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 KNL1Q8NG31 2342 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 ABCA1O95477 2261 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 COL12A1Q99715 3063 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 VPS13AQ96RL7 3174 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 DEFB131BA0A096LNP1 70 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 COX14Q96I36 57 aa0.71□□□□□ -2.3
CHD9-209ENST00000564255 PKD1L1Q8TDX9 2849 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 MUC16Q8WXI7 14507 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 ROS1P08922 2347 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 MXRA5Q9NR99 2828 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 MGAQ8IWI9 3026 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 SACSQ9NZJ4 4579 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 CELSR1Q9NYQ6 3014 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 FAT4Q6V0I7 4981 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 MRPL33O75394 65 aaKnown RBP0.7□□□□□ -2.3
CHD9-209ENST00000564255 DNAH7Q8WXX0 4024 aa0.7□□□□□ -2.3
CHD9-209ENST00000564255 ZANQ9Y493 2812 aa0.69□□□□□ -2.3
CHD9-209ENST00000564255 CADP27708 2225 aa0.69□□□□□ -2.3
CHD9-209ENST00000564255 PRKDCP78527 4128 aaKnown RBP0.69□□□□□ -2.3
CHD9-209ENST00000564255 UTP20O75691 2785 aaKnown RBP0.69□□□□□ -2.3
CHD9-209ENST00000564255 ABCA13Q86UQ4 5058 aa0.69□□□□□ -2.3
CHD9-209ENST00000564255 CNTRLQ7Z7A1 2325 aa0.69□□□□□ -2.3
CHD9-209ENST00000564255 DSTQ03001 7570 aaKnown RBP0.69□□□□□ -2.3
CHD9-209ENST00000564255 DMDP11532 3685 aa0.69□□□□□ -2.3
CHD9-209ENST00000564255 CENPEQ02224 2701 aa0.69□□□□□ -2.3
CHD9-209ENST00000564255 MAP1AP78559 2803 aaPredicted RBP0.69□□□□□ -2.3
CHD9-209ENST00000564255 FLG2Q5D862 2391 aaPredicted RBP0.69□□□□□ -2.3
CHD9-209ENST00000564255 DNAH3Q8TD57 4116 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 H0YGX0 51 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 I3L2K1 104 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 ALMS1Q8TCU4 4167 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 BOD1L1Q8NFC6 3051 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 LRP1BQ9NZR2 4599 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 TGP01266 2768 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 CRIP1P50238 77 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 ATMQ13315 3056 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 SPENQ96T58 3664 aaKnown RBP0.68□□□□□ -2.3
CHD9-209ENST00000564255 TP53AIP1Q9HCN2 124 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 CRIPTQ9P021 101 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 TNCP24821 2201 aa0.68□□□□□ -2.3
CHD9-209ENST00000564255 VWFP04275 2813 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 K7EQZ3 153 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 SPINK4O60575 86 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 SNRPGP62308 76 aaKnown RBP0.67□□□□□ -2.3
CHD9-209ENST00000564255 AKAP6Q13023 2319 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 DNAH11Q96DT5 4516 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 DYNC1H1Q14204 4646 aaKnown RBP0.67□□□□□ -2.3
CHD9-209ENST00000564255 CSMD2Q7Z408 3487 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 FXYD6P3P58550 94 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 USMG5Q96IX5 58 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 PRRC2CQ9Y520 2896 aaKnown RBP0.67□□□□□ -2.3
CHD9-209ENST00000564255 CELSR3Q9NYQ7 3312 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 NDUFA3O95167 84 aa0.67□□□□□ -2.3
CHD9-209ENST00000564255 COX6B2Q6YFQ2 88 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms