RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 DSCR10P59022 87 aa7.07□□□□□ -1.28
CLK3-213ENST00000563842 LOC110117498A0A087WWA1 95 aa7.05□□□□□ -1.28
CLK3-213ENST00000563842 C9orf118A6NHY6 69 aa7.05□□□□□ -1.28
CLK3-213ENST00000563842 J3KT08 172 aa7.05□□□□□ -1.28
CLK3-213ENST00000563842 DEFB116Q30KQ4 102 aa7.05□□□□□ -1.28
CLK3-213ENST00000563842 Q6ZQT0 140 aa7.04□□□□□ -1.28
CLK3-213ENST00000563842 IGHV6-1A0A0B4J1U7 121 aa7.02□□□□□ -1.29
CLK3-213ENST00000563842 C8orf87E5RJ46 101 aa7.02□□□□□ -1.29
CLK3-213ENST00000563842 TAX1BP3O14907 124 aa7.02□□□□□ -1.29
CLK3-213ENST00000563842 KRTAP19-2Q3LHN2 52 aa7.02□□□□□ -1.29
CLK3-213ENST00000563842 LCE2CQ5TA81 110 aa7.02□□□□□ -1.29
CLK3-213ENST00000563842 A0A1W2PPM0 123 aa7.01□□□□□ -1.29
CLK3-213ENST00000563842 H3BT86 120 aa7.01□□□□□ -1.29
CLK3-213ENST00000563842 COX6B2Q6YFQ2 88 aa7.01□□□□□ -1.29
CLK3-213ENST00000563842 A0A1B0GVX0 72 aa7□□□□□ -1.29
CLK3-213ENST00000563842 NDUFB1O75438 58 aa7□□□□□ -1.29
CLK3-213ENST00000563842 C14orf132Q9NPU4 83 aa7□□□□□ -1.29
CLK3-213ENST00000563842 KRTAP16-1A8MUX0 517 aa6.98□□□□□ -1.29
CLK3-213ENST00000563842 NOTCH2NLQ7Z3S9 236 aa6.96□□□□□ -1.3
CLK3-213ENST00000563842 MT1HP80294 61 aa6.95□□□□□ -1.3
CLK3-213ENST00000563842 SMCPP49901 116 aaPredicted RBP6.94□□□□□ -1.3
CLK3-213ENST00000563842 NREPQ16612 68 aa6.94□□□□□ -1.3
CLK3-213ENST00000563842 COL5A1-AS1Q5SY13 56 aa6.93□□□□□ -1.3
CLK3-213ENST00000563842 SPCS1Q9Y6A9 102 aa6.93□□□□□ -1.3
CLK3-213ENST00000563842 A8MWP4 228 aa6.92□□□□□ -1.3
CLK3-213ENST00000563842 M0R2T5 61 aa6.91□□□□□ -1.3
CLK3-213ENST00000563842 MTURNQ8N3F0 131 aa6.91□□□□□ -1.3
CLK3-213ENST00000563842 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.9□□□□□ -1.3
CLK3-213ENST00000563842 C8orf17Q9NRJ1 99 aa6.88□□□□□ -1.31
CLK3-213ENST00000563842 IGKV3D-7A0A0C4DH55 119 aa6.87□□□□□ -1.31
CLK3-213ENST00000563842 PRR15Q8IV56 129 aa6.86□□□□□ -1.31
CLK3-213ENST00000563842 FLGP20930 4061 aaPredicted RBP6.86□□□□□ -1.31
CLK3-213ENST00000563842 Q8N9P0 234 aaPredicted RBP6.85□□□□□ -1.31
CLK3-213ENST00000563842 ZCCHC13Q8WW36 166 aaKnown RBP6.85□□□□□ -1.31
CLK3-213ENST00000563842 RBM12B-AS1Q9P1G2 102 aa6.84□□□□□ -1.31
CLK3-213ENST00000563842 Q6ZVQ6 151 aa6.83□□□□□ -1.32
CLK3-213ENST00000563842 K7EP34 96 aa6.82□□□□□ -1.32
CLK3-213ENST00000563842 BPY2O14599 106 aa6.82□□□□□ -1.32
CLK3-213ENST00000563842 KRTAP10-6P60371 365 aaPredicted RBP6.82□□□□□ -1.32
CLK3-213ENST00000563842 FAM236DA0A1B0GTK5 79 aa6.81□□□□□ -1.32
CLK3-213ENST00000563842 FAM236CP0DP71 79 aa6.81□□□□□ -1.32
CLK3-213ENST00000563842 LORP23490 312 aaPredicted RBP6.8□□□□□ -1.32
CLK3-213ENST00000563842 GTF2H5Q6ZYL4 71 aa6.8□□□□□ -1.32
CLK3-213ENST00000563842 TMEM254Q8TBM7 123 aa6.8□□□□□ -1.32
CLK3-213ENST00000563842 PCP4L1A6NKN8 68 aa6.79□□□□□ -1.32
CLK3-213ENST00000563842 MRPL34Q9BQ48 92 aaKnown RBP6.79□□□□□ -1.32
CLK3-213ENST00000563842 MMP24-AS1A0A0U1RRL7 71 aa6.78□□□□□ -1.32
CLK3-213ENST00000563842 K7EQZ3 153 aa6.78□□□□□ -1.32
CLK3-213ENST00000563842 HRES1P13985 223 aa6.78□□□□□ -1.32
CLK3-213ENST00000563842 PRO0461Q9UI25 63 aa6.78□□□□□ -1.32
CLK3-213ENST00000563842 hDV103S1A0JD37 113 aa6.77□□□□□ -1.33
CLK3-213ENST00000563842 MPLKIPQ8TAP9 179 aa6.77□□□□□ -1.33
CLK3-213ENST00000563842 SPINK7P58062 85 aa6.76□□□□□ -1.33
CLK3-213ENST00000563842 UBL5Q9BZL1 73 aa6.75□□□□□ -1.33
CLK3-213ENST00000563842 F8W1H4 67 aa6.74□□□□□ -1.33
CLK3-213ENST00000563842 NDUFS5O43920 106 aa6.73□□□□□ -1.33
CLK3-213ENST00000563842 LINC00846Q9NV44 126 aa6.71□□□□□ -1.34
CLK3-213ENST00000563842 CASC2Q6XLA1 102 aa6.69□□□□□ -1.34
CLK3-213ENST00000563842 WFDC13Q8IUB5 93 aa6.67□□□□□ -1.34
CLK3-213ENST00000563842 Q8N9L7 120 aa6.67□□□□□ -1.34
CLK3-213ENST00000563842 ETDBQ3ZM63 59 aa6.66□□□□□ -1.34
CLK3-213ENST00000563842 HCG22E2RYF7 251 aa6.63□□□□□ -1.35
CLK3-213ENST00000563842 CXCL6P80162 114 aa6.62□□□□□ -1.35
CLK3-213ENST00000563842 C7orf65Q6ZTY9 151 aa6.6□□□□□ -1.35
CLK3-213ENST00000563842 IGKV2D-30A0A075B6S6 120 aa6.59□□□□□ -1.35
CLK3-213ENST00000563842 IGKV2-30P06310 120 aa6.59□□□□□ -1.35
CLK3-213ENST00000563842 Q5W150 140 aa6.59□□□□□ -1.35
CLK3-213ENST00000563842 KRTAP9-8Q9BYQ0 159 aa6.59□□□□□ -1.35
CLK3-213ENST00000563842 ACYP1P07311 99 aa6.57□□□□□ -1.36
CLK3-213ENST00000563842 TP53AIP1Q9HCN2 124 aa6.54□□□□□ -1.36
CLK3-213ENST00000563842 H1FX-AS1Q4G0G2 97 aa6.53□□□□□ -1.36
CLK3-213ENST00000563842 FAM240AA0A1B0GVK7 77 aa6.51□□□□□ -1.37
CLK3-213ENST00000563842 MT2AP02795 61 aa6.51□□□□□ -1.37
CLK3-213ENST00000563842 KRTAP10-10P60014 251 aa6.48□□□□□ -1.37
CLK3-213ENST00000563842 ATP5EP2Q5VTU8 51 aa6.48□□□□□ -1.37
CLK3-213ENST00000563842 SSPOA2VEC9 5147 aa6.46□□□□□ -1.38
CLK3-213ENST00000563842 MT1FP04733 61 aa6.45□□□□□ -1.38
CLK3-213ENST00000563842 C4orf26Q17RF5 130 aa6.45□□□□□ -1.38
CLK3-213ENST00000563842 MACF1Q9UPN3 7388 aaKnown RBP6.41□□□□□ -1.38
CLK3-213ENST00000563842 HIST1H4AP62805 103 aaKnown RBP6.41□□□□□ -1.38
CLK3-213ENST00000563842 KRTAP4-8Q9BYQ9 185 aa6.41□□□□□ -1.38
CLK3-213ENST00000563842 SYNE2Q8WXH0 6885 aaKnown RBP6.4□□□□□ -1.38
CLK3-213ENST00000563842 A0A1B0GV90 55 aa6.4□□□□□ -1.38
CLK3-213ENST00000563842 FCGBPQ9Y6R7 5405 aaPredicted RBP6.4□□□□□ -1.39
CLK3-213ENST00000563842 LINC00643Q86TS7 51 aa6.39□□□□□ -1.39
CLK3-213ENST00000563842 TRAV22A0A0B4J277 110 aa6.38□□□□□ -1.39
CLK3-213ENST00000563842 KRTAP9-3Q9BYQ3 159 aa6.38□□□□□ -1.39
CLK3-213ENST00000563842 C1orf64Q8NEQ6 169 aa6.37□□□□□ -1.39
CLK3-213ENST00000563842 LOC101927531A0A1B0GV80 90 aa6.35□□□□□ -1.39
CLK3-213ENST00000563842 USH2AO75445 5202 aa6.34□□□□□ -1.39
CLK3-213ENST00000563842 J3QR89 54 aa6.34□□□□□ -1.39
CLK3-213ENST00000563842 UQCRQO14949 82 aa6.34□□□□□ -1.39
CLK3-213ENST00000563842 CYP4F30PQ9H0H9 118 aa6.34□□□□□ -1.39
CLK3-213ENST00000563842 ATOX1O00244 68 aa6.32□□□□□ -1.4
CLK3-213ENST00000563842 KRTAP3-1Q9BYR8 98 aa6.32□□□□□ -1.4
CLK3-213ENST00000563842 S4R3F8 94 aa6.32□□□□□ -1.4
CLK3-213ENST00000563842 C5orf47Q569G3 176 aa6.29□□□□□ -1.4
CLK3-213ENST00000563842 A0A087WVE0 104 aa6.28□□□□□ -1.4
CLK3-213ENST00000563842 H0Y9P7 68 aa6.28□□□□□ -1.4
CLK3-213ENST00000563842 CSAG1Q6PB30 78 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms