RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 MPLKIPQ8TAP9 179 aa7.87□□□□□ -1.15
CLK3-211ENST00000563297 SPCS1Q9Y6A9 102 aa7.87□□□□□ -1.15
CLK3-211ENST00000563297 DEFB116Q30KQ4 102 aa7.86□□□□□ -1.15
CLK3-211ENST00000563297 LINC00472Q9H8W2 130 aa7.86□□□□□ -1.15
CLK3-211ENST00000563297 A0A1B0GV72 72 aa7.85□□□□□ -1.15
CLK3-211ENST00000563297 KRTAP9-7A8MTY7 169 aa7.85□□□□□ -1.15
CLK3-211ENST00000563297 HRES1P13985 223 aa7.85□□□□□ -1.15
CLK3-211ENST00000563297 ATXN8Q156A1 80 aa7.85□□□□□ -1.15
CLK3-211ENST00000563297 ORMDL1Q9P0S3 153 aa7.85□□□□□ -1.15
CLK3-211ENST00000563297 H3BQ85 93 aa7.83□□□□□ -1.16
CLK3-211ENST00000563297 K7EP34 96 aa7.83□□□□□ -1.16
CLK3-211ENST00000563297 DNAL4O96015 105 aa7.83□□□□□ -1.16
CLK3-211ENST00000563297 RBM12B-AS1Q9P1G2 102 aa7.83□□□□□ -1.16
CLK3-211ENST00000563297 TMEM256-PLSCR3K7ERE1 68 aa7.82□□□□□ -1.16
CLK3-211ENST00000563297 IGHV6-1A0A0B4J1U7 121 aa7.81□□□□□ -1.16
CLK3-211ENST00000563297 MT1FP04733 61 aa7.81□□□□□ -1.16
CLK3-211ENST00000563297 CCKP06307 115 aa7.81□□□□□ -1.16
CLK3-211ENST00000563297 LCE2BO14633 110 aa7.8□□□□□ -1.16
CLK3-211ENST00000563297 UBE2V1Q13404 147 aa7.8□□□□□ -1.16
CLK3-211ENST00000563297 TRACP01848 142 aa7.79□□□□□ -1.16
CLK3-211ENST00000563297 KRTAP9-3Q9BYQ3 159 aa7.79□□□□□ -1.16
CLK3-211ENST00000563297 FCGBPQ9Y6R7 5405 aaPredicted RBP7.78□□□□□ -1.16
CLK3-211ENST00000563297 KRTAP10-10P60014 251 aa7.77□□□□□ -1.17
CLK3-211ENST00000563297 C9JAW5 83 aa7.76□□□□□ -1.17
CLK3-211ENST00000563297 A0A1B0GVX0 72 aa7.74□□□□□ -1.17
CLK3-211ENST00000563297 C8orf87E5RJ46 101 aa7.74□□□□□ -1.17
CLK3-211ENST00000563297 KRTAP19-1Q8IUB9 90 aa7.74□□□□□ -1.17
CLK3-211ENST00000563297 BAALC-AS2P0C853 105 aa7.73□□□□□ -1.17
CLK3-211ENST00000563297 F8W1H4 67 aa7.72□□□□□ -1.17
CLK3-211ENST00000563297 VPS25Q9BRG1 176 aa7.72□□□□□ -1.17
CLK3-211ENST00000563297 RBM3P98179 157 aaKnown RBP7.71□□□□□ -1.18
CLK3-211ENST00000563297 MTURNQ8N3F0 131 aa7.71□□□□□ -1.18
CLK3-211ENST00000563297 ZCCHC13Q8WW36 166 aaKnown RBP7.69□□□□□ -1.18
CLK3-211ENST00000563297 H3BT86 120 aa7.68□□□□□ -1.18
CLK3-211ENST00000563297 SPINK7P58062 85 aa7.68□□□□□ -1.18
CLK3-211ENST00000563297 DSCR8Q96T75 97 aa7.68□□□□□ -1.18
CLK3-211ENST00000563297 PRO0461Q9UI25 63 aa7.66□□□□□ -1.18
CLK3-211ENST00000563297 J3KT08 172 aa7.65□□□□□ -1.18
CLK3-211ENST00000563297 SMCPP49901 116 aaPredicted RBP7.64□□□□□ -1.19
CLK3-211ENST00000563297 Q8N9P0 234 aaPredicted RBP7.64□□□□□ -1.19
CLK3-211ENST00000563297 C21orf62-AS1Q17RA5 79 aa7.63□□□□□ -1.19
CLK3-211ENST00000563297 Q6ZQT0 140 aa7.63□□□□□ -1.19
CLK3-211ENST00000563297 ETDBQ3ZM63 59 aa7.61□□□□□ -1.19
CLK3-211ENST00000563297 NDUFB1O75438 58 aa7.6□□□□□ -1.19
CLK3-211ENST00000563297 JMJD7-PLA2G4BH0Y9G9 81 aa7.59□□□□□ -1.19
CLK3-211ENST00000563297 C8orf17Q9NRJ1 99 aa7.57□□□□□ -1.2
CLK3-211ENST00000563297 WFDC13Q8IUB5 93 aa7.56□□□□□ -1.2
CLK3-211ENST00000563297 A8MWP4 228 aa7.55□□□□□ -1.2
CLK3-211ENST00000563297 KRTAP19-6Q3LI70 58 aa7.55□□□□□ -1.2
CLK3-211ENST00000563297 IGKV3D-7A0A0C4DH55 119 aa7.54□□□□□ -1.2
CLK3-211ENST00000563297 LINC00846Q9NV44 126 aa7.53□□□□□ -1.2
CLK3-211ENST00000563297 A0A1B0GW54 56 aa7.52□□□□□ -1.21
CLK3-211ENST00000563297 LOC110117498A0A087WWA1 95 aa7.51□□□□□ -1.21
CLK3-211ENST00000563297 J3QR89 54 aa7.51□□□□□ -1.21
CLK3-211ENST00000563297 Q6ZVQ6 151 aa7.51□□□□□ -1.21
CLK3-211ENST00000563297 C14orf132Q9NPU4 83 aa7.51□□□□□ -1.21
CLK3-211ENST00000563297 MACF1Q9UPN3 7388 aaKnown RBP7.5□□□□□ -1.21
CLK3-211ENST00000563297 PDE6GP18545 87 aa7.5□□□□□ -1.21
CLK3-211ENST00000563297 PRR15Q8IV56 129 aa7.47□□□□□ -1.21
CLK3-211ENST00000563297 SYNE2Q8WXH0 6885 aaKnown RBP7.45□□□□□ -1.22
CLK3-211ENST00000563297 K7ERU9 68 aa7.45□□□□□ -1.22
CLK3-211ENST00000563297 NREPQ16612 68 aa7.44□□□□□ -1.22
CLK3-211ENST00000563297 MRPL34Q9BQ48 92 aaKnown RBP7.44□□□□□ -1.22
CLK3-211ENST00000563297 MMP24-AS1A0A0U1RRL7 71 aa7.43□□□□□ -1.22
CLK3-211ENST00000563297 H1FX-AS1Q4G0G2 97 aa7.43□□□□□ -1.22
CLK3-211ENST00000563297 TMEM254Q8TBM7 123 aa7.43□□□□□ -1.22
CLK3-211ENST00000563297 ACYP1P07311 99 aa7.41□□□□□ -1.22
CLK3-211ENST00000563297 hDV103S1A0JD37 113 aa7.38□□□□□ -1.23
CLK3-211ENST00000563297 FAM240AA0A1B0GVK7 77 aa7.35□□□□□ -1.23
CLK3-211ENST00000563297 K7EQZ3 153 aa7.35□□□□□ -1.23
CLK3-211ENST00000563297 NDUFS5O43920 106 aa7.35□□□□□ -1.23
CLK3-211ENST00000563297 Q5W150 140 aa7.33□□□□□ -1.24
CLK3-211ENST00000563297 UBL5Q9BZL1 73 aa7.33□□□□□ -1.24
CLK3-211ENST00000563297 IGKV2D-30A0A075B6S6 120 aa7.32□□□□□ -1.24
CLK3-211ENST00000563297 IGKV2-30P06310 120 aa7.32□□□□□ -1.24
CLK3-211ENST00000563297 KRTAP6-3Q3LI67 103 aa7.32□□□□□ -1.24
CLK3-211ENST00000563297 C7orf65Q6ZTY9 151 aa7.29□□□□□ -1.24
CLK3-211ENST00000563297 BPY2O14599 106 aa7.27□□□□□ -1.25
CLK3-211ENST00000563297 LINC00643Q86TS7 51 aa7.26□□□□□ -1.25
CLK3-211ENST00000563297 C4orf26Q17RF5 130 aa7.23□□□□□ -1.25
CLK3-211ENST00000563297 Q8N9L7 120 aa7.22□□□□□ -1.25
CLK3-211ENST00000563297 HCG22E2RYF7 251 aa7.21□□□□□ -1.26
CLK3-211ENST00000563297 CASC2Q6XLA1 102 aa7.21□□□□□ -1.26
CLK3-211ENST00000563297 ATP5EP2Q5VTU8 51 aa7.19□□□□□ -1.26
CLK3-211ENST00000563297 CXCL6P80162 114 aa7.17□□□□□ -1.26
CLK3-211ENST00000563297 C5orf47Q569G3 176 aa7.17□□□□□ -1.26
CLK3-211ENST00000563297 KRTAP3-1Q9BYR8 98 aa7.16□□□□□ -1.26
CLK3-211ENST00000563297 MT-ATP8P03928 68 aa7.15□□□□□ -1.26
CLK3-211ENST00000563297 HIST1H4AP62805 103 aaKnown RBP7.14□□□□□ -1.27
CLK3-211ENST00000563297 MT1BP07438 61 aa7.13□□□□□ -1.27
CLK3-211ENST00000563297 FAM236AA0A1B0GUQ0 79 aa7.12□□□□□ -1.27
CLK3-211ENST00000563297 FAM236BA0A1B0GV22 79 aa7.12□□□□□ -1.27
CLK3-211ENST00000563297 A6NN06 94 aa7.11□□□□□ -1.27
CLK3-211ENST00000563297 IMUPQ9GZP8 106 aa7.1□□□□□ -1.27
CLK3-211ENST00000563297 S4R3F8 94 aa7.09□□□□□ -1.27
CLK3-211ENST00000563297 KRTAP19-8Q3LI54 63 aa7.08□□□□□ -1.28
CLK3-211ENST00000563297 Q5VV11 94 aa7.08□□□□□ -1.28
CLK3-211ENST00000563297 CSAG1Q6PB30 78 aa7.08□□□□□ -1.28
CLK3-211ENST00000563297 SPRR2GQ9BYE4 73 aa7.08□□□□□ -1.28
CLK3-211ENST00000563297 C1orf64Q8NEQ6 169 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms