RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 Q5VSD8 79 aa6.69□□□□□ -1.34
USP3-218ENST00000560202 IGLV9-49A0A0B4J1Y8 123 aa6.68□□□□□ -1.34
USP3-218ENST00000560202 IGKV4-1P06312 121 aa6.68□□□□□ -1.34
USP3-218ENST00000560202 Q1T7F1 81 aa6.68□□□□□ -1.34
USP3-218ENST00000560202 KRTAP1-4P0C5Y4 121 aa6.68□□□□□ -1.34
USP3-218ENST00000560202 IGFL1Q6UW32 110 aa6.67□□□□□ -1.34
USP3-218ENST00000560202 FAM229BQ4G0N7 80 aa6.66□□□□□ -1.34
USP3-218ENST00000560202 KRTAP17-1Q9BYP8 105 aa6.66□□□□□ -1.34
USP3-218ENST00000560202 A0A0G2JQZ4 141 aa6.65□□□□□ -1.34
USP3-218ENST00000560202 hDV103S1A0JD37 113 aa6.65□□□□□ -1.34
USP3-218ENST00000560202 MOBPQ13875 183 aa6.65□□□□□ -1.34
USP3-218ENST00000560202 Q8N1X5 172 aa6.65□□□□□ -1.34
USP3-218ENST00000560202 A0A087X002 238 aa6.65□□□□□ -1.35
USP3-218ENST00000560202 Q8NBF4 154 aa6.65□□□□□ -1.35
USP3-218ENST00000560202 PKHD1L1Q86WI1 4243 aa6.64□□□□□ -1.35
USP3-218ENST00000560202 A0A1W2PNM2 257 aa6.63□□□□□ -1.35
USP3-218ENST00000560202 NDUFB1O75438 58 aa6.63□□□□□ -1.35
USP3-218ENST00000560202 MPLKIPQ8TAP9 179 aa6.63□□□□□ -1.35
USP3-218ENST00000560202 CYP4F30PQ9H0H9 118 aa6.63□□□□□ -1.35
USP3-218ENST00000560202 BIRC6Q9NR09 4857 aa6.62□□□□□ -1.35
USP3-218ENST00000560202 KRTAP13-2Q52LG2 175 aa6.62□□□□□ -1.35
USP3-218ENST00000560202 SSBP3-AS1Q7Z2R9 100 aa6.61□□□□□ -1.35
USP3-218ENST00000560202 PMAIP1Q13794 54 aa6.61□□□□□ -1.35
USP3-218ENST00000560202 ZCCHC13Q8WW36 166 aaKnown RBP6.6□□□□□ -1.35
USP3-218ENST00000560202 PRR26Q8N8Z3 221 aa6.58□□□□□ -1.36
USP3-218ENST00000560202 TYMSOSQ8TAI1 123 aa6.58□□□□□ -1.36
USP3-218ENST00000560202 A0A087WSZ3 146 aa6.55□□□□□ -1.36
USP3-218ENST00000560202 C1orf64Q8NEQ6 169 aa6.55□□□□□ -1.36
USP3-218ENST00000560202 CD164Q04900 197 aa6.55□□□□□ -1.36
USP3-218ENST00000560202 H3BPC8 53 aa6.54□□□□□ -1.36
USP3-218ENST00000560202 LORP23490 312 aaPredicted RBP6.54□□□□□ -1.36
USP3-218ENST00000560202 Q8N9L7 120 aa6.54□□□□□ -1.36
USP3-218ENST00000560202 HERC2O95714 4834 aa6.53□□□□□ -1.36
USP3-218ENST00000560202 SPANXA2-OT1Q8N9U9 137 aa6.52□□□□□ -1.37
USP3-218ENST00000560202 KRTAP4-5Q9BYR2 181 aa6.52□□□□□ -1.37
USP3-218ENST00000560202 FAT3Q8TDW7 4589 aa6.51□□□□□ -1.37
USP3-218ENST00000560202 LRP1Q07954 4544 aaKnown RBP6.51□□□□□ -1.37
USP3-218ENST00000560202 TRAV22A0A0B4J277 110 aa6.51□□□□□ -1.37
USP3-218ENST00000560202 LIMD2Q9BT23 127 aa6.5□□□□□ -1.37
USP3-218ENST00000560202 MP68P56378 58 aa6.49□□□□□ -1.37
USP3-218ENST00000560202 LINC00304Q8N9R0 145 aa6.49□□□□□ -1.37
USP3-218ENST00000560202 HCG22E2RYF7 251 aa6.49□□□□□ -1.37
USP3-218ENST00000560202 KRTAP10-8P60410 259 aa6.49□□□□□ -1.37
USP3-218ENST00000560202 SPINK1P00995 79 aa6.48□□□□□ -1.37
USP3-218ENST00000560202 SPAG11AQ6PDA7 123 aa6.48□□□□□ -1.37
USP3-218ENST00000560202 DSCR10P59022 87 aa6.46□□□□□ -1.37
USP3-218ENST00000560202 LINC00472Q9H8W2 130 aa6.45□□□□□ -1.38
USP3-218ENST00000560202 TNXBP22105 4242 aa6.45□□□□□ -1.38
USP3-218ENST00000560202 MYCBP2O75592 4640 aa6.45□□□□□ -1.38
USP3-218ENST00000560202 DEFB116Q30KQ4 102 aa6.44□□□□□ -1.38
USP3-218ENST00000560202 ABCA13Q86UQ4 5058 aa6.44□□□□□ -1.38
USP3-218ENST00000560202 RPS29P62273 56 aaKnown RBP6.43□□□□□ -1.38
USP3-218ENST00000560202 ASB16-AS1Q495Z4 193 aa6.43□□□□□ -1.38
USP3-218ENST00000560202 Q96NJ1 140 aa6.43□□□□□ -1.38
USP3-218ENST00000560202 PSPHP1O15172 72 aa6.42□□□□□ -1.38
USP3-218ENST00000560202 NDUFS5O43920 106 aa6.42□□□□□ -1.38
USP3-218ENST00000560202 FLG2Q5D862 2391 aaPredicted RBP6.42□□□□□ -1.38
USP3-218ENST00000560202 MT1HL1P0DM35 61 aa6.42□□□□□ -1.38
USP3-218ENST00000560202 ATP11AUNQ6ZP68 121 aa6.42□□□□□ -1.38
USP3-218ENST00000560202 K7EQZ3 153 aa6.41□□□□□ -1.38
USP3-218ENST00000560202 Q5VV11 94 aa6.41□□□□□ -1.38
USP3-218ENST00000560202 LINC00208Q96KT6 92 aa6.41□□□□□ -1.38
USP3-218ENST00000560202 KTN1-AS1Q86SY8 53 aa6.4□□□□□ -1.38
USP3-218ENST00000560202 A8MUN3 132 aa6.39□□□□□ -1.39
USP3-218ENST00000560202 Q75L30 129 aa6.39□□□□□ -1.39
USP3-218ENST00000560202 LOC101927531A0A1B0GV80 90 aa6.38□□□□□ -1.39
USP3-218ENST00000560202 KRTAP29-1A8MX34 341 aaPredicted RBP6.38□□□□□ -1.39
USP3-218ENST00000560202 Q8N9P0 234 aaPredicted RBP6.38□□□□□ -1.39
USP3-218ENST00000560202 A8MWP4 228 aa6.36□□□□□ -1.39
USP3-218ENST00000560202 CHKB-CPT1BH3BT56 60 aa6.36□□□□□ -1.39
USP3-218ENST00000560202 H0Y9P7 68 aa6.33□□□□□ -1.4
USP3-218ENST00000560202 CDC42SE1Q9NRR8 79 aa6.32□□□□□ -1.4
USP3-218ENST00000560202 IGLV7-46A0A075B6I9 117 aa6.31□□□□□ -1.4
USP3-218ENST00000560202 A0A1B0GVX0 72 aa6.31□□□□□ -1.4
USP3-218ENST00000560202 CASC2Q6XLA1 102 aa6.31□□□□□ -1.4
USP3-218ENST00000560202 RETNLBQ9BQ08 111 aa6.31□□□□□ -1.4
USP3-218ENST00000560202 PRR15LQ9BU68 103 aa6.31□□□□□ -1.4
USP3-218ENST00000560202 IGHV6-1A0A0B4J1U7 121 aa6.3□□□□□ -1.4
USP3-218ENST00000560202 PRR4Q16378 134 aa6.3□□□□□ -1.4
USP3-218ENST00000560202 WFDC13Q8IUB5 93 aa6.29□□□□□ -1.4
USP3-218ENST00000560202 A6NED7 52 aa6.28□□□□□ -1.4
USP3-218ENST00000560202 A6NN06 94 aa6.28□□□□□ -1.4
USP3-218ENST00000560202 TP53AIP1Q9HCN2 124 aa6.28□□□□□ -1.4
USP3-218ENST00000560202 LINC01558Q9Y6Z2 57 aa6.28□□□□□ -1.4
USP3-218ENST00000560202 COA5Q86WW8 74 aa6.27□□□□□ -1.41
USP3-218ENST00000560202 C8orf17Q9NRJ1 99 aa6.27□□□□□ -1.41
USP3-218ENST00000560202 DMBT1Q9UGM3 2413 aaPredicted RBP6.27□□□□□ -1.41
USP3-218ENST00000560202 RBM12B-AS1Q9P1G2 102 aa6.26□□□□□ -1.41
USP3-218ENST00000560202 MMP24-AS1A0A0U1RRL7 71 aa6.26□□□□□ -1.41
USP3-218ENST00000560202 C7orf65Q6ZTY9 151 aa6.26□□□□□ -1.41
USP3-218ENST00000560202 NOTCH2NLQ7Z3S9 236 aa6.26□□□□□ -1.41
USP3-218ENST00000560202 C8orf87E5RJ46 101 aa6.25□□□□□ -1.41
USP3-218ENST00000560202 PCLOQ9Y6V0 5065 aa6.25□□□□□ -1.41
USP3-218ENST00000560202 LINC00313P59037 77 aa6.24□□□□□ -1.41
USP3-218ENST00000560202 LCA10Q71F78 164 aa6.24□□□□□ -1.41
USP3-218ENST00000560202 SPTSSBQ8NFR3 76 aa6.23□□□□□ -1.41
USP3-218ENST00000560202 C9orf92A6NGG3 77 aa6.19□□□□□ -1.42
USP3-218ENST00000560202 MRPL34Q9BQ48 92 aaKnown RBP6.19□□□□□ -1.42
USP3-218ENST00000560202 KRTAP16-1A8MUX0 517 aa6.18□□□□□ -1.42
USP3-218ENST00000560202 KRTAP4-8Q9BYQ9 185 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms