RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 IGFL1Q6UW32 110 aa5.25□□□□□ -1.57
LDLR-211ENST00000560173 A0A1W2PNM2 257 aa5.24□□□□□ -1.57
LDLR-211ENST00000560173 KRTAP13-3Q3SY46 172 aa5.24□□□□□ -1.57
LDLR-211ENST00000560173 LCE2AQ5TA79 106 aaPredicted RBP5.24□□□□□ -1.57
LDLR-211ENST00000560173 MUC17Q685J3 4493 aa5.23□□□□□ -1.57
LDLR-211ENST00000560173 IGKV3D-7A0A0C4DH55 119 aa5.23□□□□□ -1.57
LDLR-211ENST00000560173 A0A0U1RQV1 116 aa5.23□□□□□ -1.57
LDLR-211ENST00000560173 Q5XG85 94 aa5.23□□□□□ -1.57
LDLR-211ENST00000560173 BPY2O14599 106 aa5.22□□□□□ -1.57
LDLR-211ENST00000560173 SEC61GP60059 68 aa5.22□□□□□ -1.57
LDLR-211ENST00000560173 HIST1H4AP62805 103 aaKnown RBP5.22□□□□□ -1.57
LDLR-211ENST00000560173 ATOX1O00244 68 aa5.21□□□□□ -1.58
LDLR-211ENST00000560173 SS18L2Q9UHA2 77 aa5.21□□□□□ -1.58
LDLR-211ENST00000560173 FAM236AA0A1B0GUQ0 79 aa5.2□□□□□ -1.58
LDLR-211ENST00000560173 FAM236BA0A1B0GV22 79 aa5.2□□□□□ -1.58
LDLR-211ENST00000560173 ANAPC13Q9BS18 74 aa5.2□□□□□ -1.58
LDLR-211ENST00000560173 C1orf195Q5TG92 126 aa5.19□□□□□ -1.58
LDLR-211ENST00000560173 SMIM20Q8N5G0 67 aa5.19□□□□□ -1.58
LDLR-211ENST00000560173 A0A087WSZ3 146 aa5.18□□□□□ -1.58
LDLR-211ENST00000560173 J3KT08 172 aa5.18□□□□□ -1.58
LDLR-211ENST00000560173 C5orf47Q569G3 176 aa5.18□□□□□ -1.58
LDLR-211ENST00000560173 FSIP2Q5CZC0 6907 aa5.17□□□□□ -1.58
LDLR-211ENST00000560173 ASB16-AS1Q495Z4 193 aa5.16□□□□□ -1.58
LDLR-211ENST00000560173 XP32Q5T750 250 aa5.14□□□□□ -1.59
LDLR-211ENST00000560173 A0A087WVE0 104 aa5.13□□□□□ -1.59
LDLR-211ENST00000560173 NDUFB1O75438 58 aa5.13□□□□□ -1.59
LDLR-211ENST00000560173 C9orf92A6NGG3 77 aa5.12□□□□□ -1.59
LDLR-211ENST00000560173 IGKV4-1P06312 121 aa5.12□□□□□ -1.59
LDLR-211ENST00000560173 CRCT1Q9UGL9 99 aa5.12□□□□□ -1.59
LDLR-211ENST00000560173 UQCRQO14949 82 aa5.11□□□□□ -1.59
LDLR-211ENST00000560173 SERP2Q8N6R1 65 aa5.11□□□□□ -1.59
LDLR-211ENST00000560173 LINC00472Q9H8W2 130 aa5.11□□□□□ -1.59
LDLR-211ENST00000560173 A8MWP4 228 aa5.1□□□□□ -1.59
LDLR-211ENST00000560173 COX7CP15954 63 aa5.1□□□□□ -1.59
LDLR-211ENST00000560173 DSCR10P59022 87 aa5.1□□□□□ -1.59
LDLR-211ENST00000560173 SEC61BP60468 96 aaKnown RBP5.1□□□□□ -1.59
LDLR-211ENST00000560173 TRAV7A0A075B6U4 112 aa5.09□□□□□ -1.59
LDLR-211ENST00000560173 PRR15Q8IV56 129 aa5.08□□□□□ -1.6
LDLR-211ENST00000560173 HCG22E2RYF7 251 aa5.07□□□□□ -1.6
LDLR-211ENST00000560173 K7EQZ3 153 aa5.07□□□□□ -1.6
LDLR-211ENST00000560173 LCE2DQ5TA82 110 aaPredicted RBP5.07□□□□□ -1.6
LDLR-211ENST00000560173 Q8N9L7 120 aa5.07□□□□□ -1.6
LDLR-211ENST00000560173 Q96NJ1 140 aa5.06□□□□□ -1.6
LDLR-211ENST00000560173 KRTAP4-1Q9BYQ7 146 aa5.06□□□□□ -1.6
LDLR-211ENST00000560173 RPL37P61927 97 aaKnown RBP5.04□□□□□ -1.6
LDLR-211ENST00000560173 DEFB116Q30KQ4 102 aa5.04□□□□□ -1.6
LDLR-211ENST00000560173 PCOTHQ58A44 107 aa5.04□□□□□ -1.6
LDLR-211ENST00000560173 CASC2Q6XLA1 102 aa5.03□□□□□ -1.6
LDLR-211ENST00000560173 A0A1B0GVX0 72 aa5.02□□□□□ -1.61
LDLR-211ENST00000560173 CCDC179H3BU77 68 aa5.02□□□□□ -1.61
LDLR-211ENST00000560173 C8orf87E5RJ46 101 aa5.01□□□□□ -1.61
LDLR-211ENST00000560173 OCR1Q9BZK8 76 aa5.01□□□□□ -1.61
LDLR-211ENST00000560173 NDUFC1O43677 76 aa5□□□□□ -1.61
LDLR-211ENST00000560173 hDV103S1A0JD37 113 aa4.99□□□□□ -1.61
LDLR-211ENST00000560173 Q75L30 129 aa4.99□□□□□ -1.61
LDLR-211ENST00000560173 TP53AIP1Q9HCN2 124 aa4.99□□□□□ -1.61
LDLR-211ENST00000560173 C8orf17Q9NRJ1 99 aa4.99□□□□□ -1.61
LDLR-211ENST00000560173 MMP24-AS1A0A0U1RRL7 71 aa4.98□□□□□ -1.61
LDLR-211ENST00000560173 WFDC13Q8IUB5 93 aa4.98□□□□□ -1.61
LDLR-211ENST00000560173 TMEM254Q8TBM7 123 aa4.98□□□□□ -1.61
LDLR-211ENST00000560173 V9GYY9 64 aa4.98□□□□□ -1.61
LDLR-211ENST00000560173 IGHV6-1A0A0B4J1U7 121 aa4.97□□□□□ -1.61
LDLR-211ENST00000560173 H3BPC8 53 aa4.97□□□□□ -1.61
LDLR-211ENST00000560173 MP68P56378 58 aa4.97□□□□□ -1.61
LDLR-211ENST00000560173 KLKP1Q107X0 134 aa4.97□□□□□ -1.61
LDLR-211ENST00000560173 C20orf197Q8N268 126 aa4.97□□□□□ -1.61
LDLR-211ENST00000560173 C20orf166-AS1Q96NR2 134 aa4.96□□□□□ -1.62
LDLR-211ENST00000560173 A8MUU9 505 aa4.95□□□□□ -1.62
LDLR-211ENST00000560173 MRPL34Q9BQ48 92 aaKnown RBP4.95□□□□□ -1.62
LDLR-211ENST00000560173 KRTAP16-1A8MUX0 517 aa4.94□□□□□ -1.62
LDLR-211ENST00000560173 LINC00313P59037 77 aa4.94□□□□□ -1.62
LDLR-211ENST00000560173 TMEM258P61165 79 aa4.94□□□□□ -1.62
LDLR-211ENST00000560173 NOTCH2NLQ7Z3S9 236 aa4.94□□□□□ -1.62
LDLR-211ENST00000560173 KRTAP19-2Q3LHN2 52 aa4.93□□□□□ -1.62
LDLR-211ENST00000560173 ATP11AUNQ6ZP68 121 aa4.93□□□□□ -1.62
LDLR-211ENST00000560173 ATP5EP56381 51 aaPredicted RBP4.92□□□□□ -1.62
LDLR-211ENST00000560173 TRAV22A0A0B4J277 110 aa4.91□□□□□ -1.62
LDLR-211ENST00000560173 LCE2CQ5TA81 110 aa4.91□□□□□ -1.62
LDLR-211ENST00000560173 NDUFS5O43920 106 aa4.9□□□□□ -1.63
LDLR-211ENST00000560173 H0Y9P7 68 aa4.89□□□□□ -1.63
LDLR-211ENST00000560173 SNURFQ9Y675 71 aa4.88□□□□□ -1.63
LDLR-211ENST00000560173 FLGP20930 4061 aaPredicted RBP4.87□□□□□ -1.63
LDLR-211ENST00000560173 H7BZZ5 65 aa4.87□□□□□ -1.63
LDLR-211ENST00000560173 KRTAP9-7A8MTY7 169 aa4.86□□□□□ -1.63
LDLR-211ENST00000560173 Q8N9P0 234 aaPredicted RBP4.86□□□□□ -1.63
LDLR-211ENST00000560173 ZCCHC13Q8WW36 166 aaKnown RBP4.86□□□□□ -1.63
LDLR-211ENST00000560173 LINC00208Q96KT6 92 aa4.86□□□□□ -1.63
LDLR-211ENST00000560173 A0A0A0MQY5 61 aa4.85□□□□□ -1.63
LDLR-211ENST00000560173 FAM236DA0A1B0GTK5 79 aa4.85□□□□□ -1.63
LDLR-211ENST00000560173 FAM236CP0DP71 79 aa4.85□□□□□ -1.63
LDLR-211ENST00000560173 C1orf64Q8NEQ6 169 aa4.85□□□□□ -1.63
LDLR-211ENST00000560173 LOC101927531A0A1B0GV80 90 aa4.84□□□□□ -1.63
LDLR-211ENST00000560173 H3BS24 57 aa4.83□□□□□ -1.64
LDLR-211ENST00000560173 MT1HP80294 61 aa4.83□□□□□ -1.64
LDLR-211ENST00000560173 CYSTM1Q9H1C7 97 aa4.83□□□□□ -1.64
LDLR-211ENST00000560173 RPS28P62857 69 aaKnown RBP4.82□□□□□ -1.64
LDLR-211ENST00000560173 COX6B2Q6YFQ2 88 aa4.82□□□□□ -1.64
LDLR-211ENST00000560173 SPANXA2-OT1Q8N9U9 137 aa4.81□□□□□ -1.64
LDLR-211ENST00000560173 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.79□□□□□ -1.64
LDLR-211ENST00000560173 SERP1Q9Y6X1 66 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms