RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 FAM236CP0DP71 79 aa8.82□□□□□ -1
HDDC3-205ENST00000559898 DSCR8Q96T75 97 aa8.81□□□□□ -1
HDDC3-205ENST00000559898 SSPOA2VEC9 5147 aa8.79□□□□□ -1
HDDC3-205ENST00000559898 MT1FP04733 61 aa8.79□□□□□ -1
HDDC3-205ENST00000559898 Q6ZQT0 140 aa8.78□□□□□ -1
HDDC3-205ENST00000559898 C9JAW5 83 aa8.77□□□□□ -1.01
HDDC3-205ENST00000559898 C8orf87E5RJ46 101 aa8.77□□□□□ -1.01
HDDC3-205ENST00000559898 ZCCHC13Q8WW36 166 aaKnown RBP8.74□□□□□ -1.01
HDDC3-205ENST00000559898 RBM12B-AS1Q9P1G2 102 aa8.74□□□□□ -1.01
HDDC3-205ENST00000559898 LCE2BO14633 110 aa8.72□□□□□ -1.01
HDDC3-205ENST00000559898 ATXN8Q156A1 80 aa8.71□□□□□ -1.02
HDDC3-205ENST00000559898 IGKV3D-7A0A0C4DH55 119 aa8.69□□□□□ -1.02
HDDC3-205ENST00000559898 J3KT08 172 aa8.69□□□□□ -1.02
HDDC3-205ENST00000559898 SPINK7P58062 85 aa8.69□□□□□ -1.02
HDDC3-205ENST00000559898 Q8N9P0 234 aaPredicted RBP8.69□□□□□ -1.02
HDDC3-205ENST00000559898 KRTAP9-3Q9BYQ3 159 aa8.69□□□□□ -1.02
HDDC3-205ENST00000559898 C14orf132Q9NPU4 83 aa8.69□□□□□ -1.02
HDDC3-205ENST00000559898 C8orf17Q9NRJ1 99 aa8.69□□□□□ -1.02
HDDC3-205ENST00000559898 LOC110117498A0A087WWA1 95 aa8.67□□□□□ -1.02
HDDC3-205ENST00000559898 M0R143 59 aa8.67□□□□□ -1.02
HDDC3-205ENST00000559898 A8MWP4 228 aa8.65□□□□□ -1.02
HDDC3-205ENST00000559898 KRTAP10-10P60014 251 aa8.65□□□□□ -1.02
HDDC3-205ENST00000559898 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.64□□□□□ -1.03
HDDC3-205ENST00000559898 JMJD7-PLA2G4BH0Y9G9 81 aa8.64□□□□□ -1.03
HDDC3-205ENST00000559898 NDUFB1O75438 58 aa8.62□□□□□ -1.03
HDDC3-205ENST00000559898 BATFQ16520 125 aa8.6□□□□□ -1.03
HDDC3-205ENST00000559898 C21orf62-AS1Q17RA5 79 aa8.6□□□□□ -1.03
HDDC3-205ENST00000559898 Q6ZVQ6 151 aa8.59□□□□□ -1.03
HDDC3-205ENST00000559898 KRTAP19-1Q8IUB9 90 aa8.59□□□□□ -1.03
HDDC3-205ENST00000559898 MTURNQ8N3F0 131 aa8.59□□□□□ -1.03
HDDC3-205ENST00000559898 FCGBPQ9Y6R7 5405 aaPredicted RBP8.59□□□□□ -1.04
HDDC3-205ENST00000559898 MMP24-AS1A0A0U1RRL7 71 aa8.58□□□□□ -1.04
HDDC3-205ENST00000559898 SMIM6P0DI80 62 aa8.58□□□□□ -1.04
HDDC3-205ENST00000559898 WFDC13Q8IUB5 93 aa8.58□□□□□ -1.04
HDDC3-205ENST00000559898 PRR15Q8IV56 129 aa8.57□□□□□ -1.04
HDDC3-205ENST00000559898 LYRM7Q5U5X0 104 aa8.56□□□□□ -1.04
HDDC3-205ENST00000559898 A0A1B0GW54 56 aa8.54□□□□□ -1.04
HDDC3-205ENST00000559898 PDE6GP18545 87 aa8.54□□□□□ -1.04
HDDC3-205ENST00000559898 NREPQ16612 68 aa8.54□□□□□ -1.04
HDDC3-205ENST00000559898 KRTAP9-7A8MTY7 169 aa8.53□□□□□ -1.04
HDDC3-205ENST00000559898 K7EQZ3 153 aa8.53□□□□□ -1.04
HDDC3-205ENST00000559898 TAX1BP3O14907 124 aa8.51□□□□□ -1.05
HDDC3-205ENST00000559898 MRPL34Q9BQ48 92 aaKnown RBP8.5□□□□□ -1.05
HDDC3-205ENST00000559898 TMEM254Q8TBM7 123 aa8.49□□□□□ -1.05
HDDC3-205ENST00000559898 C9orf118A6NHY6 69 aa8.48□□□□□ -1.05
HDDC3-205ENST00000559898 LOC105371267A0A1B0GV96 52 aa8.46□□□□□ -1.06
HDDC3-205ENST00000559898 TSTD3H0UI37 97 aa8.46□□□□□ -1.06
HDDC3-205ENST00000559898 A0A1W2PPM0 123 aa8.45□□□□□ -1.06
HDDC3-205ENST00000559898 hDV103S1A0JD37 113 aa8.45□□□□□ -1.06
HDDC3-205ENST00000559898 Q5W150 140 aa8.45□□□□□ -1.06
HDDC3-205ENST00000559898 H3BT86 120 aa8.44□□□□□ -1.06
HDDC3-205ENST00000559898 NDUFS5O43920 106 aa8.43□□□□□ -1.06
HDDC3-205ENST00000559898 Q8N9L7 120 aa8.43□□□□□ -1.06
HDDC3-205ENST00000559898 SMCPP49901 116 aaPredicted RBP8.39□□□□□ -1.07
HDDC3-205ENST00000559898 IGKV2D-30A0A075B6S6 120 aa8.38□□□□□ -1.07
HDDC3-205ENST00000559898 BPY2O14599 106 aa8.38□□□□□ -1.07
HDDC3-205ENST00000559898 IGKV2-30P06310 120 aa8.38□□□□□ -1.07
HDDC3-205ENST00000559898 H1FX-AS1Q4G0G2 97 aa8.37□□□□□ -1.07
HDDC3-205ENST00000559898 KRTAP19-6Q3LI70 58 aa8.34□□□□□ -1.07
HDDC3-205ENST00000559898 HCG22E2RYF7 251 aa8.31□□□□□ -1.08
HDDC3-205ENST00000559898 SPCS1Q9Y6A9 102 aa8.31□□□□□ -1.08
HDDC3-205ENST00000559898 CASC2Q6XLA1 102 aa8.3□□□□□ -1.08
HDDC3-205ENST00000559898 C7orf65Q6ZTY9 151 aa8.29□□□□□ -1.08
HDDC3-205ENST00000559898 C4orf26Q17RF5 130 aa8.27□□□□□ -1.09
HDDC3-205ENST00000559898 PRO0461Q9UI25 63 aa8.27□□□□□ -1.09
HDDC3-205ENST00000559898 LINC00846Q9NV44 126 aa8.26□□□□□ -1.09
HDDC3-205ENST00000559898 KRTAP3-1Q9BYR8 98 aa8.22□□□□□ -1.09
HDDC3-205ENST00000559898 MACF1Q9UPN3 7388 aaKnown RBP8.21□□□□□ -1.09
HDDC3-205ENST00000559898 CXCL6P80162 114 aa8.17□□□□□ -1.1
HDDC3-205ENST00000559898 SYNE2Q8WXH0 6885 aaKnown RBP8.17□□□□□ -1.1
HDDC3-205ENST00000559898 K7EP34 96 aa8.16□□□□□ -1.1
HDDC3-205ENST00000559898 C5orf47Q569G3 176 aa8.16□□□□□ -1.1
HDDC3-205ENST00000559898 COL5A1-AS1Q5SY13 56 aa8.14□□□□□ -1.11
HDDC3-205ENST00000559898 UBL5Q9BZL1 73 aa8.13□□□□□ -1.11
HDDC3-205ENST00000559898 LCA10Q71F78 164 aa8.06□□□□□ -1.12
HDDC3-205ENST00000559898 C1orf64Q8NEQ6 169 aa8.06□□□□□ -1.12
HDDC3-205ENST00000559898 S4R3F8 94 aa8.06□□□□□ -1.12
HDDC3-205ENST00000559898 MT1BP07438 61 aa8.04□□□□□ -1.12
HDDC3-205ENST00000559898 FAM236AA0A1B0GUQ0 79 aa8.01□□□□□ -1.13
HDDC3-205ENST00000559898 FAM236BA0A1B0GV22 79 aa8.01□□□□□ -1.13
HDDC3-205ENST00000559898 ETDBQ3ZM63 59 aa8.01□□□□□ -1.13
HDDC3-205ENST00000559898 A0A087WVE0 104 aa7.99□□□□□ -1.13
HDDC3-205ENST00000559898 KRTAP3-3Q9BYR6 98 aa7.99□□□□□ -1.13
HDDC3-205ENST00000559898 KRTAP6-3Q3LI67 103 aa7.97□□□□□ -1.13
HDDC3-205ENST00000559898 CSAG1Q6PB30 78 aa7.96□□□□□ -1.14
HDDC3-205ENST00000559898 PCP4L1A6NKN8 68 aa7.95□□□□□ -1.14
HDDC3-205ENST00000559898 GTF2H5Q6ZYL4 71 aa7.94□□□□□ -1.14
HDDC3-205ENST00000559898 TP53AIP1Q9HCN2 124 aa7.94□□□□□ -1.14
HDDC3-205ENST00000559898 F8W1H4 67 aa7.93□□□□□ -1.14
HDDC3-205ENST00000559898 KRTAP19-8Q3LI54 63 aa7.93□□□□□ -1.14
HDDC3-205ENST00000559898 SPRR2GQ9BYE4 73 aa7.93□□□□□ -1.14
HDDC3-205ENST00000559898 CYP4F30PQ9H0H9 118 aa7.91□□□□□ -1.14
HDDC3-205ENST00000559898 Q5VV11 94 aa7.89□□□□□ -1.15
HDDC3-205ENST00000559898 A6NN06 94 aa7.88□□□□□ -1.15
HDDC3-205ENST00000559898 KLKP1Q107X0 134 aa7.85□□□□□ -1.15
HDDC3-205ENST00000559898 TRAV22A0A0B4J277 110 aa7.82□□□□□ -1.16
HDDC3-205ENST00000559898 KRTAP10-5P60370 271 aa7.81□□□□□ -1.16
HDDC3-205ENST00000559898 LOC101927531A0A1B0GV80 90 aa7.77□□□□□ -1.17
HDDC3-205ENST00000559898 HIST1H4AP62805 103 aaKnown RBP7.74□□□□□ -1.17
HDDC3-205ENST00000559898 H0Y9P7 68 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms