RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CASC2Q6XLA1 102 aa7.28□□□□□ -1.24
USP3-213ENST00000559711 WFDC13Q8IUB5 93 aa7.28□□□□□ -1.24
USP3-213ENST00000559711 RYR1P21817 5038 aa7.28□□□□□ -1.24
USP3-213ENST00000559711 PKHD1L1Q86WI1 4243 aa7.27□□□□□ -1.25
USP3-213ENST00000559711 LINC00304Q8N9R0 145 aa7.27□□□□□ -1.25
USP3-213ENST00000559711 C8orf17Q9NRJ1 99 aa7.26□□□□□ -1.25
USP3-213ENST00000559711 IGHV6-1A0A0B4J1U7 121 aa7.25□□□□□ -1.25
USP3-213ENST00000559711 hDV103S1A0JD37 113 aa7.24□□□□□ -1.25
USP3-213ENST00000559711 KRTAP17-1Q9BYP8 105 aa7.23□□□□□ -1.25
USP3-213ENST00000559711 NOTCH2NLQ7Z3S9 236 aa7.22□□□□□ -1.25
USP3-213ENST00000559711 C20orf197Q8N268 126 aa7.21□□□□□ -1.26
USP3-213ENST00000559711 Q8N1X5 172 aa7.2□□□□□ -1.26
USP3-213ENST00000559711 KIAA1109Q2LD37 5005 aa7.19□□□□□ -1.26
USP3-213ENST00000559711 EPPK1P58107 5090 aaKnown RBP7.19□□□□□ -1.26
USP3-213ENST00000559711 C8orf87E5RJ46 101 aa7.19□□□□□ -1.26
USP3-213ENST00000559711 KLKP1Q107X0 134 aa7.19□□□□□ -1.26
USP3-213ENST00000559711 KRTAP10-8P60410 259 aa7.19□□□□□ -1.26
USP3-213ENST00000559711 TMEM254Q8TBM7 123 aa7.19□□□□□ -1.26
USP3-213ENST00000559711 CYSTM1Q9H1C7 97 aa7.19□□□□□ -1.26
USP3-213ENST00000559711 C5orf47Q569G3 176 aa7.17□□□□□ -1.26
USP3-213ENST00000559711 MRPL34Q9BQ48 92 aaKnown RBP7.17□□□□□ -1.26
USP3-213ENST00000559711 A0A0U1RQV1 116 aa7.16□□□□□ -1.26
USP3-213ENST00000559711 LINC00313P59037 77 aa7.15□□□□□ -1.27
USP3-213ENST00000559711 TP53AIP1Q9HCN2 124 aa7.15□□□□□ -1.27
USP3-213ENST00000559711 SNURFQ9Y675 71 aa7.15□□□□□ -1.27
USP3-213ENST00000559711 LRP1Q07954 4544 aaKnown RBP7.14□□□□□ -1.27
USP3-213ENST00000559711 TNXBP22105 4242 aa7.11□□□□□ -1.27
USP3-213ENST00000559711 FAT3Q8TDW7 4589 aa7.1□□□□□ -1.27
USP3-213ENST00000559711 H7BZZ5 65 aa7.1□□□□□ -1.27
USP3-213ENST00000559711 NDUFC1O43677 76 aa7.1□□□□□ -1.27
USP3-213ENST00000559711 ZCCHC13Q8WW36 166 aaKnown RBP7.1□□□□□ -1.27
USP3-213ENST00000559711 KRTAP16-1A8MUX0 517 aa7.09□□□□□ -1.27
USP3-213ENST00000559711 MP68P56378 58 aa7.09□□□□□ -1.27
USP3-213ENST00000559711 H3BPC8 53 aa7.09□□□□□ -1.27
USP3-213ENST00000559711 NDUFS5O43920 106 aa7.09□□□□□ -1.27
USP3-213ENST00000559711 Q8N9P0 234 aaPredicted RBP7.09□□□□□ -1.27
USP3-213ENST00000559711 TRAV22A0A0B4J277 110 aa7.08□□□□□ -1.28
USP3-213ENST00000559711 H0Y9P7 68 aa7.08□□□□□ -1.28
USP3-213ENST00000559711 TMEM258P61165 79 aa7.07□□□□□ -1.28
USP3-213ENST00000559711 FLG2Q5D862 2391 aaPredicted RBP7.07□□□□□ -1.28
USP3-213ENST00000559711 MT1HL1P0DM35 61 aa7.05□□□□□ -1.28
USP3-213ENST00000559711 LINC00208Q96KT6 92 aa7.05□□□□□ -1.28
USP3-213ENST00000559711 MYCBP2O75592 4640 aa7.03□□□□□ -1.28
USP3-213ENST00000559711 KRTAP13-3Q3SY46 172 aa7.03□□□□□ -1.28
USP3-213ENST00000559711 C1orf64Q8NEQ6 169 aa7.02□□□□□ -1.29
USP3-213ENST00000559711 RETNLBQ9BQ08 111 aa7.02□□□□□ -1.29
USP3-213ENST00000559711 OXTP01178 125 aa7.01□□□□□ -1.29
USP3-213ENST00000559711 Q5W150 140 aa7.01□□□□□ -1.29
USP3-213ENST00000559711 KRTAP4-5Q9BYR2 181 aa7□□□□□ -1.29
USP3-213ENST00000559711 DMBT1Q9UGM3 2413 aaPredicted RBP6.98□□□□□ -1.29
USP3-213ENST00000559711 FAM236DA0A1B0GTK5 79 aa6.97□□□□□ -1.29
USP3-213ENST00000559711 FAM236CP0DP71 79 aa6.97□□□□□ -1.29
USP3-213ENST00000559711 FP248Q71RG6 208 aaPredicted RBP6.97□□□□□ -1.29
USP3-213ENST00000559711 C9orf92A6NGG3 77 aa6.95□□□□□ -1.3
USP3-213ENST00000559711 ATP5EP56381 51 aaPredicted RBP6.95□□□□□ -1.3
USP3-213ENST00000559711 LOC101927531A0A1B0GV80 90 aa6.94□□□□□ -1.3
USP3-213ENST00000559711 C20orf166-AS1Q96NR2 134 aa6.94□□□□□ -1.3
USP3-213ENST00000559711 A8MUU9 505 aa6.93□□□□□ -1.3
USP3-213ENST00000559711 LCE2BO14633 110 aa6.93□□□□□ -1.3
USP3-213ENST00000559711 BIRC6Q9NR09 4857 aa6.92□□□□□ -1.3
USP3-213ENST00000559711 RPS28P62857 69 aaKnown RBP6.9□□□□□ -1.3
USP3-213ENST00000559711 SPANXA2-OT1Q8N9U9 137 aa6.9□□□□□ -1.3
USP3-213ENST00000559711 CYP4F30PQ9H0H9 118 aa6.9□□□□□ -1.3
USP3-213ENST00000559711 HERC2O95714 4834 aa6.89□□□□□ -1.31
USP3-213ENST00000559711 IGLV7-46A0A075B6I9 117 aa6.89□□□□□ -1.31
USP3-213ENST00000559711 IGKV2-30P06310 120 aa6.88□□□□□ -1.31
USP3-213ENST00000559711 PCOTHQ58A44 107 aa6.87□□□□□ -1.31
USP3-213ENST00000559711 Q75L30 129 aa6.87□□□□□ -1.31
USP3-213ENST00000559711 SERP1Q9Y6X1 66 aa6.86□□□□□ -1.31
USP3-213ENST00000559711 LOC100996750A0A140TA64 210 aa6.85□□□□□ -1.31
USP3-213ENST00000559711 KRTAP4-6Q9BYQ5 205 aa6.85□□□□□ -1.31
USP3-213ENST00000559711 ABCA13Q86UQ4 5058 aa6.82□□□□□ -1.32
USP3-213ENST00000559711 PRR4Q16378 134 aa6.82□□□□□ -1.32
USP3-213ENST00000559711 IGKV2D-30A0A075B6S6 120 aa6.8□□□□□ -1.32
USP3-213ENST00000559711 XP32Q5T750 250 aa6.79□□□□□ -1.32
USP3-213ENST00000559711 HRES1P13985 223 aa6.78□□□□□ -1.32
USP3-213ENST00000559711 C7orf65Q6ZTY9 151 aa6.77□□□□□ -1.32
USP3-213ENST00000559711 RPL37P61927 97 aaKnown RBP6.77□□□□□ -1.33
USP3-213ENST00000559711 TPRXLQ17RH7 258 aa6.77□□□□□ -1.33
USP3-213ENST00000559711 J3QL48 77 aa6.76□□□□□ -1.33
USP3-213ENST00000559711 ATP11AUNQ6ZP68 121 aa6.74□□□□□ -1.33
USP3-213ENST00000559711 SPINK7P58062 85 aa6.71□□□□□ -1.34
USP3-213ENST00000559711 DMAC1Q96GE9 116 aa6.71□□□□□ -1.34
USP3-213ENST00000559711 SMIM26A0A096LP01 95 aa6.69□□□□□ -1.34
USP3-213ENST00000559711 COA5Q86WW8 74 aa6.68□□□□□ -1.34
USP3-213ENST00000559711 ACYP2P14621 99 aa6.67□□□□□ -1.34
USP3-213ENST00000559711 C4orf26Q17RF5 130 aa6.63□□□□□ -1.35
USP3-213ENST00000559711 A8MUN3 132 aa6.61□□□□□ -1.35
USP3-213ENST00000559711 LRP2P98164 4655 aa6.61□□□□□ -1.35
USP3-213ENST00000559711 LCE2AQ5TA79 106 aaPredicted RBP6.61□□□□□ -1.35
USP3-213ENST00000559711 LPAP08519 4548 aa6.6□□□□□ -1.35
USP3-213ENST00000559711 KRTAP3-1Q9BYR8 98 aa6.57□□□□□ -1.36
USP3-213ENST00000559711 Q1T7F1 81 aa6.56□□□□□ -1.36
USP3-213ENST00000559711 COX6B2Q6YFQ2 88 aa6.55□□□□□ -1.36
USP3-213ENST00000559711 MPLKIPQ8TAP9 179 aa6.54□□□□□ -1.36
USP3-213ENST00000559711 CHKB-CPT1BH3BT56 60 aa6.53□□□□□ -1.36
USP3-213ENST00000559711 PCLOQ9Y6V0 5065 aa6.53□□□□□ -1.36
USP3-213ENST00000559711 SEC61BP60468 96 aaKnown RBP6.52□□□□□ -1.37
USP3-213ENST00000559711 V9GYY9 64 aa6.52□□□□□ -1.37
USP3-213ENST00000559711 HERC1Q15751 4861 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms