RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ASB16-AS1Q495Z4 193 aa5.43□□□□□ -1.54
CUX1-216ENST00000558469 C1orf195Q5TG92 126 aa5.43□□□□□ -1.54
CUX1-216ENST00000558469 PRR4Q16378 134 aa5.42□□□□□ -1.54
CUX1-216ENST00000558469 NREPQ16612 68 aa5.4□□□□□ -1.54
CUX1-216ENST00000558469 DEFB116Q30KQ4 102 aa5.4□□□□□ -1.54
CUX1-216ENST00000558469 Q96NJ1 140 aa5.4□□□□□ -1.54
CUX1-216ENST00000558469 FP248Q71RG6 208 aaPredicted RBP5.39□□□□□ -1.55
CUX1-216ENST00000558469 LINC00472Q9H8W2 130 aa5.38□□□□□ -1.55
CUX1-216ENST00000558469 LINC00846Q9NV44 126 aa5.38□□□□□ -1.55
CUX1-216ENST00000558469 IGLV7-46A0A075B6I9 117 aa5.37□□□□□ -1.55
CUX1-216ENST00000558469 IGKV4-1P06312 121 aa5.37□□□□□ -1.55
CUX1-216ENST00000558469 KRTAP4-2Q9BYR5 136 aa5.37□□□□□ -1.55
CUX1-216ENST00000558469 HERC1Q15751 4861 aa5.36□□□□□ -1.55
CUX1-216ENST00000558469 Q6ZVQ6 151 aa5.36□□□□□ -1.55
CUX1-216ENST00000558469 SIGMAR1Q99720 223 aa5.36□□□□□ -1.55
CUX1-216ENST00000558469 KRTAP9-3Q9BYQ3 159 aa5.36□□□□□ -1.55
CUX1-216ENST00000558469 UBL5Q9BZL1 73 aa5.36□□□□□ -1.55
CUX1-216ENST00000558469 ACYP1P07311 99 aa5.35□□□□□ -1.55
CUX1-216ENST00000558469 LCE5AQ5TCM9 118 aa5.35□□□□□ -1.55
CUX1-216ENST00000558469 FAM240AA0A1B0GVK7 77 aa5.34□□□□□ -1.55
CUX1-216ENST00000558469 J3KT08 172 aa5.34□□□□□ -1.55
CUX1-216ENST00000558469 J3QR89 54 aa5.34□□□□□ -1.55
CUX1-216ENST00000558469 KRTAP4-11Q9BYQ6 195 aa5.34□□□□□ -1.55
CUX1-216ENST00000558469 C9orf92A6NGG3 77 aa5.32□□□□□ -1.56
CUX1-216ENST00000558469 BPY2O14599 106 aa5.32□□□□□ -1.56
CUX1-216ENST00000558469 SVIPQ8NHG7 77 aa5.32□□□□□ -1.56
CUX1-216ENST00000558469 TPRXLQ17RH7 258 aa5.31□□□□□ -1.56
CUX1-216ENST00000558469 IGHV6-1A0A0B4J1U7 121 aa5.3□□□□□ -1.56
CUX1-216ENST00000558469 KRTAP13-3Q3SY46 172 aa5.3□□□□□ -1.56
CUX1-216ENST00000558469 A0A1B0GVX0 72 aa5.29□□□□□ -1.56
CUX1-216ENST00000558469 A8MWP4 228 aa5.29□□□□□ -1.56
CUX1-216ENST00000558469 K7ERU9 68 aa5.29□□□□□ -1.56
CUX1-216ENST00000558469 NDUFB1O75438 58 aa5.29□□□□□ -1.56
CUX1-216ENST00000558469 DSCR10P59022 87 aa5.29□□□□□ -1.56
CUX1-216ENST00000558469 IGKV3D-7A0A0C4DH55 119 aa5.28□□□□□ -1.56
CUX1-216ENST00000558469 CDIP1Q9H305 208 aa5.28□□□□□ -1.56
CUX1-216ENST00000558469 K7EQZ3 153 aa5.27□□□□□ -1.57
CUX1-216ENST00000558469 LINC00313P59037 77 aa5.27□□□□□ -1.57
CUX1-216ENST00000558469 LPAP08519 4548 aa5.27□□□□□ -1.57
CUX1-216ENST00000558469 CXCL6P80162 114 aa5.26□□□□□ -1.57
CUX1-216ENST00000558469 NOTCH2NLQ7Z3S9 236 aa5.26□□□□□ -1.57
CUX1-216ENST00000558469 PRR15Q8IV56 129 aa5.26□□□□□ -1.57
CUX1-216ENST00000558469 Q8N9L7 120 aa5.26□□□□□ -1.57
CUX1-216ENST00000558469 C8orf87E5RJ46 101 aa5.24□□□□□ -1.57
CUX1-216ENST00000558469 LINC00643Q86TS7 51 aa5.24□□□□□ -1.57
CUX1-216ENST00000558469 C8orf17Q9NRJ1 99 aa5.24□□□□□ -1.57
CUX1-216ENST00000558469 HMCN2Q8NDA2 5059 aa5.23□□□□□ -1.57
CUX1-216ENST00000558469 ATP5EP2Q5VTU8 51 aa5.23□□□□□ -1.57
CUX1-216ENST00000558469 MMP24-AS1A0A0U1RRL7 71 aa5.21□□□□□ -1.58
CUX1-216ENST00000558469 KRTAP16-1A8MUX0 517 aa5.21□□□□□ -1.58
CUX1-216ENST00000558469 hDV103S1A0JD37 113 aa5.19□□□□□ -1.58
CUX1-216ENST00000558469 HIST1H4AP62805 103 aaKnown RBP5.19□□□□□ -1.58
CUX1-216ENST00000558469 WFDC13Q8IUB5 93 aa5.19□□□□□ -1.58
CUX1-216ENST00000558469 CASC2Q6XLA1 102 aa5.18□□□□□ -1.58
CUX1-216ENST00000558469 LRP2P98164 4655 aa5.17□□□□□ -1.58
CUX1-216ENST00000558469 A8MUU9 505 aa5.17□□□□□ -1.58
CUX1-216ENST00000558469 HCG22E2RYF7 251 aa5.17□□□□□ -1.58
CUX1-216ENST00000558469 RPL37P61927 97 aaKnown RBP5.17□□□□□ -1.58
CUX1-216ENST00000558469 Q75L30 129 aa5.17□□□□□ -1.58
CUX1-216ENST00000558469 TMEM254Q8TBM7 123 aa5.17□□□□□ -1.58
CUX1-216ENST00000558469 C20orf166-AS1Q96NR2 134 aa5.17□□□□□ -1.58
CUX1-216ENST00000558469 KRTAP3-1Q9BYR8 98 aa5.17□□□□□ -1.58
CUX1-216ENST00000558469 MRPL34Q9BQ48 92 aaKnown RBP5.16□□□□□ -1.58
CUX1-216ENST00000558469 A0A087WVE0 104 aa5.14□□□□□ -1.59
CUX1-216ENST00000558469 NDUFS5O43920 106 aa5.14□□□□□ -1.59
CUX1-216ENST00000558469 MT-ATP8P03928 68 aa5.14□□□□□ -1.59
CUX1-216ENST00000558469 SEC61BP60468 96 aaKnown RBP5.14□□□□□ -1.59
CUX1-216ENST00000558469 Q8N9P0 234 aaPredicted RBP5.14□□□□□ -1.59
CUX1-216ENST00000558469 PCOTHQ58A44 107 aa5.13□□□□□ -1.59
CUX1-216ENST00000558469 ATP11AUNQ6ZP68 121 aa5.13□□□□□ -1.59
CUX1-216ENST00000558469 IMUPQ9GZP8 106 aa5.1□□□□□ -1.59
CUX1-216ENST00000558469 ZCCHC13Q8WW36 166 aaKnown RBP5.08□□□□□ -1.6
CUX1-216ENST00000558469 MUC17Q685J3 4493 aa5.06□□□□□ -1.6
CUX1-216ENST00000558469 UBR4Q5T4S7 5183 aa5.06□□□□□ -1.6
CUX1-216ENST00000558469 KRTAP4-1Q9BYQ7 146 aa5.05□□□□□ -1.6
CUX1-216ENST00000558469 TP53AIP1Q9HCN2 124 aa5.05□□□□□ -1.6
CUX1-216ENST00000558469 SCGB1A1P11684 91 aa5.04□□□□□ -1.6
CUX1-216ENST00000558469 Q5W150 140 aa5.04□□□□□ -1.6
CUX1-216ENST00000558469 FAM236AA0A1B0GUQ0 79 aa5.02□□□□□ -1.61
CUX1-216ENST00000558469 FAM236BA0A1B0GV22 79 aa5.02□□□□□ -1.61
CUX1-216ENST00000558469 UQCRQO14949 82 aa5□□□□□ -1.61
CUX1-216ENST00000558469 OCR1Q9BZK8 76 aa4.99□□□□□ -1.61
CUX1-216ENST00000558469 RNF213Q63HN8 5207 aa4.99□□□□□ -1.61
CUX1-216ENST00000558469 TRAV22A0A0B4J277 110 aa4.98□□□□□ -1.61
CUX1-216ENST00000558469 SPINK7P58062 85 aa4.98□□□□□ -1.61
CUX1-216ENST00000558469 IGKV2D-30A0A075B6S6 120 aa4.97□□□□□ -1.61
CUX1-216ENST00000558469 IGKV2-30P06310 120 aa4.97□□□□□ -1.61
CUX1-216ENST00000558469 MUC2Q02817 5179 aa4.97□□□□□ -1.61
CUX1-216ENST00000558469 H0Y9P7 68 aa4.96□□□□□ -1.62
CUX1-216ENST00000558469 ATOX1O00244 68 aa4.95□□□□□ -1.62
CUX1-216ENST00000558469 SMIM20Q8N5G0 67 aa4.95□□□□□ -1.62
CUX1-216ENST00000558469 C5orf47Q569G3 176 aa4.94□□□□□ -1.62
CUX1-216ENST00000558469 C7orf65Q6ZTY9 151 aa4.94□□□□□ -1.62
CUX1-216ENST00000558469 TRAV7A0A075B6U4 112 aa4.93□□□□□ -1.62
CUX1-216ENST00000558469 PCP4P48539 62 aa4.93□□□□□ -1.62
CUX1-216ENST00000558469 HRES1P13985 223 aa4.92□□□□□ -1.62
CUX1-216ENST00000558469 MP68P56378 58 aa4.92□□□□□ -1.62
CUX1-216ENST00000558469 LOC101927531A0A1B0GV80 90 aa4.91□□□□□ -1.62
CUX1-216ENST00000558469 C1orf64Q8NEQ6 169 aa4.91□□□□□ -1.62
CUX1-216ENST00000558469 LINC00208Q96KT6 92 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms