RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 STARD9Q9P2P6 4700 aa4.42□□□□□ -1.7
VPS13C-206ENST00000558338 KRTAP29-1A8MX34 341 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-206ENST00000558338 CSMD3Q7Z407 3707 aa4.42□□□□□ -1.7
VPS13C-206ENST00000558338 PRKDCP78527 4128 aaKnown RBP4.42□□□□□ -1.7
VPS13C-206ENST00000558338 C8orf87E5RJ46 101 aa4.41□□□□□ -1.7
VPS13C-206ENST00000558338 ZNF861PO60384 105 aa4.41□□□□□ -1.7
VPS13C-206ENST00000558338 Q5XG85 94 aa4.41□□□□□ -1.7
VPS13C-206ENST00000558338 PSORS1C2Q9UIG4 136 aa4.41□□□□□ -1.7
VPS13C-206ENST00000558338 MOBPQ13875 183 aa4.4□□□□□ -1.71
VPS13C-206ENST00000558338 DNAH6Q9C0G6 4158 aa4.39□□□□□ -1.71
VPS13C-206ENST00000558338 hDV103S1A0JD37 113 aa4.39□□□□□ -1.71
VPS13C-206ENST00000558338 DNAH17Q9UFH2 4485 aa4.39□□□□□ -1.71
VPS13C-206ENST00000558338 HECTD4Q9Y4D8 3996 aa4.38□□□□□ -1.71
VPS13C-206ENST00000558338 TRAV22A0A0B4J277 110 aa4.38□□□□□ -1.71
VPS13C-206ENST00000558338 MMP24-AS1A0A0U1RRL7 71 aa4.38□□□□□ -1.71
VPS13C-206ENST00000558338 H0Y9P7 68 aa4.38□□□□□ -1.71
VPS13C-206ENST00000558338 CYP4F30PQ9H0H9 118 aa4.38□□□□□ -1.71
VPS13C-206ENST00000558338 TP53AIP1Q9HCN2 124 aa4.38□□□□□ -1.71
VPS13C-206ENST00000558338 Q96NJ1 140 aa4.37□□□□□ -1.71
VPS13C-206ENST00000558338 LY6G6CO95867 125 aa4.37□□□□□ -1.71
VPS13C-206ENST00000558338 IGLV7-43P04211 117 aa4.37□□□□□ -1.71
VPS13C-206ENST00000558338 HRCT1Q6UXD1 115 aa4.36□□□□□ -1.71
VPS13C-206ENST00000558338 SPANXA2-OT1Q8N9U9 137 aa4.36□□□□□ -1.71
VPS13C-206ENST00000558338 LINC00208Q96KT6 92 aa4.36□□□□□ -1.71
VPS13C-206ENST00000558338 A0A1B0GVX0 72 aa4.35□□□□□ -1.71
VPS13C-206ENST00000558338 FP248Q71RG6 208 aaPredicted RBP4.35□□□□□ -1.71
VPS13C-206ENST00000558338 NDUFS5O43920 106 aa4.35□□□□□ -1.71
VPS13C-206ENST00000558338 ASB16-AS1Q495Z4 193 aa4.35□□□□□ -1.71
VPS13C-206ENST00000558338 C8orf17Q9NRJ1 99 aa4.35□□□□□ -1.71
VPS13C-206ENST00000558338 PRAC1Q96KF2 57 aa4.34□□□□□ -1.71
VPS13C-206ENST00000558338 DNAH2Q9P225 4427 aa4.34□□□□□ -1.72
VPS13C-206ENST00000558338 SSBP3-AS1Q7Z2R9 100 aa4.33□□□□□ -1.72
VPS13C-206ENST00000558338 C1orf64Q8NEQ6 169 aa4.33□□□□□ -1.72
VPS13C-206ENST00000558338 MPLKIPQ8TAP9 179 aa4.32□□□□□ -1.72
VPS13C-206ENST00000558338 RBM12B-AS1Q9P1G2 102 aa4.32□□□□□ -1.72
VPS13C-206ENST00000558338 ALMS1Q8TCU4 4167 aa4.32□□□□□ -1.72
VPS13C-206ENST00000558338 KRTAP10-2P60368 255 aa4.32□□□□□ -1.72
VPS13C-206ENST00000558338 FAM229BQ4G0N7 80 aa4.32□□□□□ -1.72
VPS13C-206ENST00000558338 NOTCH2NLQ7Z3S9 236 aa4.32□□□□□ -1.72
VPS13C-206ENST00000558338 IGHV6-1A0A0B4J1U7 121 aa4.31□□□□□ -1.72
VPS13C-206ENST00000558338 MRPL34Q9BQ48 92 aaKnown RBP4.31□□□□□ -1.72
VPS13C-206ENST00000558338 DNAH8Q96JB1 4490 aa4.31□□□□□ -1.72
VPS13C-206ENST00000558338 KMT2AQ03164 3969 aa4.3□□□□□ -1.72
VPS13C-206ENST00000558338 CIRBP-AS1Q8TBR5 109 aa4.3□□□□□ -1.72
VPS13C-206ENST00000558338 ANAPC11Q9NYG5 84 aa4.3□□□□□ -1.72
VPS13C-206ENST00000558338 TENM2Q9NT68 2774 aa4.3□□□□□ -1.72
VPS13C-206ENST00000558338 KRTAP21-3Q3LHN1 58 aa4.29□□□□□ -1.72
VPS13C-206ENST00000558338 Q6ZSA8 131 aa4.29□□□□□ -1.72
VPS13C-206ENST00000558338 PSPHP1O15172 72 aa4.28□□□□□ -1.72
VPS13C-206ENST00000558338 Q1T7F1 81 aa4.28□□□□□ -1.72
VPS13C-206ENST00000558338 IGLV7-46A0A075B6I9 117 aa4.27□□□□□ -1.73
VPS13C-206ENST00000558338 PRR4Q16378 134 aa4.27□□□□□ -1.73
VPS13C-206ENST00000558338 FRAS1Q86XX4 4008 aa4.26□□□□□ -1.73
VPS13C-206ENST00000558338 LOC101927531A0A1B0GV80 90 aa4.26□□□□□ -1.73
VPS13C-206ENST00000558338 SPINK6Q6UWN8 80 aa4.26□□□□□ -1.73
VPS13C-206ENST00000558338 MEGF8Q7Z7M0 2845 aa4.26□□□□□ -1.73
VPS13C-206ENST00000558338 DNAH5Q8TE73 4624 aa4.25□□□□□ -1.73
VPS13C-206ENST00000558338 SRRM2Q9UQ35 2752 aaKnown RBP4.25□□□□□ -1.73
VPS13C-206ENST00000558338 LIMD2Q9BT23 127 aa4.25□□□□□ -1.73
VPS13C-206ENST00000558338 DNHD1Q96M86 4753 aa4.25□□□□□ -1.73
VPS13C-206ENST00000558338 DNAH11Q96DT5 4516 aa4.25□□□□□ -1.73
VPS13C-206ENST00000558338 KRTAP10-1P60331 282 aa4.24□□□□□ -1.73
VPS13C-206ENST00000558338 PCOTHQ58A44 107 aa4.22□□□□□ -1.73
VPS13C-206ENST00000558338 FBN3Q75N90 2809 aa4.22□□□□□ -1.73
VPS13C-206ENST00000558338 LINC00313P59037 77 aa4.22□□□□□ -1.73
VPS13C-206ENST00000558338 COA5Q86WW8 74 aa4.22□□□□□ -1.73
VPS13C-206ENST00000558338 A0A087X002 238 aa4.21□□□□□ -1.74
VPS13C-206ENST00000558338 KRTAP13-2Q52LG2 175 aa4.21□□□□□ -1.74
VPS13C-206ENST00000558338 BRK1Q8WUW1 75 aa4.21□□□□□ -1.74
VPS13C-206ENST00000558338 KRTAP13-3Q3SY46 172 aa4.2□□□□□ -1.74
VPS13C-206ENST00000558338 KRTAP1-4P0C5Y4 121 aa4.19□□□□□ -1.74
VPS13C-206ENST00000558338 Q8N9P0 234 aaPredicted RBP4.19□□□□□ -1.74
VPS13C-206ENST00000558338 SPINK1P00995 79 aa4.18□□□□□ -1.74
VPS13C-206ENST00000558338 PKD1P98161 4303 aa4.17□□□□□ -1.74
VPS13C-206ENST00000558338 RPS29P62273 56 aaKnown RBP4.17□□□□□ -1.74
VPS13C-206ENST00000558338 TYMSOSQ8TAI1 123 aa4.17□□□□□ -1.74
VPS13C-206ENST00000558338 TGP01266 2768 aa4.17□□□□□ -1.74
VPS13C-206ENST00000558338 FAT2Q9NYQ8 4349 aa4.16□□□□□ -1.74
VPS13C-206ENST00000558338 Q5W150 140 aa4.15□□□□□ -1.74
VPS13C-206ENST00000558338 A8MUN3 132 aa4.15□□□□□ -1.75
VPS13C-206ENST00000558338 SPAG11AQ6PDA7 123 aa4.15□□□□□ -1.75
VPS13C-206ENST00000558338 HRES1P13985 223 aa4.14□□□□□ -1.75
VPS13C-206ENST00000558338 ACYP2P14621 99 aa4.14□□□□□ -1.75
VPS13C-206ENST00000558338 Q5VV11 94 aa4.14□□□□□ -1.75
VPS13C-206ENST00000558338 PRR15LQ9BU68 103 aa4.14□□□□□ -1.75
VPS13C-206ENST00000558338 KRTAP16-1A8MUX0 517 aa4.13□□□□□ -1.75
VPS13C-206ENST00000558338 IGKV2-30P06310 120 aa4.13□□□□□ -1.75
VPS13C-206ENST00000558338 LINC01558Q9Y6Z2 57 aa4.13□□□□□ -1.75
VPS13C-206ENST00000558338 LINC00304Q8N9R0 145 aa4.12□□□□□ -1.75
VPS13C-206ENST00000558338 DMAC1Q96GE9 116 aa4.12□□□□□ -1.75
VPS13C-206ENST00000558338 LRP1BQ9NZR2 4599 aa4.11□□□□□ -1.75
VPS13C-206ENST00000558338 CHKB-CPT1BH3BT56 60 aa4.11□□□□□ -1.75
VPS13C-206ENST00000558338 KRTAP3-1Q9BYR8 98 aa4.11□□□□□ -1.75
VPS13C-206ENST00000558338 HYDINQ4G0P3 5121 aa4.1□□□□□ -1.75
VPS13C-206ENST00000558338 VPS13BQ7Z7G8 4022 aa4.1□□□□□ -1.75
VPS13C-206ENST00000558338 SACSQ9NZJ4 4579 aa4.09□□□□□ -1.75
VPS13C-206ENST00000558338 A0A1B0GVY2 172 aa4.07□□□□□ -1.76
VPS13C-206ENST00000558338 A6NED7 52 aa4.07□□□□□ -1.76
VPS13C-206ENST00000558338 RETNLBQ9BQ08 111 aa4.07□□□□□ -1.76
VPS13C-206ENST00000558338 KTN1-AS1Q86SY8 53 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms