RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 IGLV9-49A0A0B4J1Y8 123 aa7.6□□□□□ -1.19
SHMT2-229ENST00000557348 A8MWP4 228 aa7.6□□□□□ -1.19
SHMT2-229ENST00000557348 CASC2Q6XLA1 102 aa7.6□□□□□ -1.19
SHMT2-229ENST00000557348 DNAH2Q9P225 4427 aa7.59□□□□□ -1.19
SHMT2-229ENST00000557348 DNAH17Q9UFH2 4485 aa7.59□□□□□ -1.19
SHMT2-229ENST00000557348 CHKB-CPT1BH3BT56 60 aa7.58□□□□□ -1.2
SHMT2-229ENST00000557348 HECTD4Q9Y4D8 3996 aa7.58□□□□□ -1.2
SHMT2-229ENST00000557348 MOBPQ13875 183 aa7.57□□□□□ -1.2
SHMT2-229ENST00000557348 SSBP3-AS1Q7Z2R9 100 aa7.57□□□□□ -1.2
SHMT2-229ENST00000557348 CDC42SE1Q9NRR8 79 aa7.57□□□□□ -1.2
SHMT2-229ENST00000557348 A0A0G2JQZ4 141 aa7.55□□□□□ -1.2
SHMT2-229ENST00000557348 WFDC13Q8IUB5 93 aa7.55□□□□□ -1.2
SHMT2-229ENST00000557348 LINC01558Q9Y6Z2 57 aa7.55□□□□□ -1.2
SHMT2-229ENST00000557348 A0A1B0GVY2 172 aa7.54□□□□□ -1.2
SHMT2-229ENST00000557348 LINC00472Q9H8W2 130 aa7.54□□□□□ -1.2
SHMT2-229ENST00000557348 PRR15LQ9BU68 103 aa7.54□□□□□ -1.2
SHMT2-229ENST00000557348 EPPK1P58107 5090 aaKnown RBP7.53□□□□□ -1.2
SHMT2-229ENST00000557348 BIRC6Q9NR09 4857 aa7.52□□□□□ -1.21
SHMT2-229ENST00000557348 COA5Q86WW8 74 aa7.51□□□□□ -1.21
SHMT2-229ENST00000557348 ASB16-AS1Q495Z4 193 aa7.51□□□□□ -1.21
SHMT2-229ENST00000557348 A0A087X002 238 aa7.5□□□□□ -1.21
SHMT2-229ENST00000557348 PRR4Q16378 134 aa7.5□□□□□ -1.21
SHMT2-229ENST00000557348 FRAS1Q86XX4 4008 aa7.49□□□□□ -1.21
SHMT2-229ENST00000557348 A6NED7 52 aa7.49□□□□□ -1.21
SHMT2-229ENST00000557348 A6NN06 94 aa7.48□□□□□ -1.21
SHMT2-229ENST00000557348 SPINK6Q6UWN8 80 aa7.48□□□□□ -1.21
SHMT2-229ENST00000557348 ANAPC11Q9NYG5 84 aa7.48□□□□□ -1.21
SHMT2-229ENST00000557348 MMP24-AS1A0A0U1RRL7 71 aa7.45□□□□□ -1.22
SHMT2-229ENST00000557348 C7orf65Q6ZTY9 151 aa7.45□□□□□ -1.22
SHMT2-229ENST00000557348 CDK2AP2O75956 126 aa7.44□□□□□ -1.22
SHMT2-229ENST00000557348 LCA10Q71F78 164 aa7.44□□□□□ -1.22
SHMT2-229ENST00000557348 DEFB116Q30KQ4 102 aa7.44□□□□□ -1.22
SHMT2-229ENST00000557348 FAT2Q9NYQ8 4349 aa7.43□□□□□ -1.22
SHMT2-229ENST00000557348 Q96NJ1 140 aa7.43□□□□□ -1.22
SHMT2-229ENST00000557348 RBM12B-AS1Q9P1G2 102 aa7.42□□□□□ -1.22
SHMT2-229ENST00000557348 DNAH11Q96DT5 4516 aa7.42□□□□□ -1.22
SHMT2-229ENST00000557348 KRTAP1-4P0C5Y4 121 aa7.41□□□□□ -1.22
SHMT2-229ENST00000557348 DNAH8Q96JB1 4490 aa7.41□□□□□ -1.22
SHMT2-229ENST00000557348 DNAH5Q8TE73 4624 aa7.4□□□□□ -1.22
SHMT2-229ENST00000557348 PLA2G1BP04054 148 aaKnown RBP7.4□□□□□ -1.23
SHMT2-229ENST00000557348 SPTSSBQ8NFR3 76 aa7.4□□□□□ -1.23
SHMT2-229ENST00000557348 SRRM2Q9UQ35 2752 aaKnown RBP7.4□□□□□ -1.23
SHMT2-229ENST00000557348 PKD1P98161 4303 aa7.39□□□□□ -1.23
SHMT2-229ENST00000557348 KRTAP13-2Q52LG2 175 aa7.39□□□□□ -1.23
SHMT2-229ENST00000557348 A0A1B0GVX0 72 aa7.38□□□□□ -1.23
SHMT2-229ENST00000557348 C4orf48Q5BLP8 95 aa7.38□□□□□ -1.23
SHMT2-229ENST00000557348 TYMSOSQ8TAI1 123 aa7.37□□□□□ -1.23
SHMT2-229ENST00000557348 C8orf17Q9NRJ1 99 aa7.36□□□□□ -1.23
SHMT2-229ENST00000557348 SPINK1P00995 79 aa7.35□□□□□ -1.23
SHMT2-229ENST00000557348 RPS29P62273 56 aaKnown RBP7.35□□□□□ -1.23
SHMT2-229ENST00000557348 SPAG11AQ6PDA7 123 aa7.35□□□□□ -1.23
SHMT2-229ENST00000557348 C8orf87E5RJ46 101 aa7.33□□□□□ -1.24
SHMT2-229ENST00000557348 SMR3BP02814 79 aaPredicted RBP7.33□□□□□ -1.24
SHMT2-229ENST00000557348 MRPL34Q9BQ48 92 aaKnown RBP7.32□□□□□ -1.24
SHMT2-229ENST00000557348 IGHV6-1A0A0B4J1U7 121 aa7.32□□□□□ -1.24
SHMT2-229ENST00000557348 A8MU10 97 aa7.32□□□□□ -1.24
SHMT2-229ENST00000557348 FAM229AH3BQW9 127 aa7.31□□□□□ -1.24
SHMT2-229ENST00000557348 PKHD1P08F94 4074 aa7.3□□□□□ -1.24
SHMT2-229ENST00000557348 HRES1P13985 223 aa7.3□□□□□ -1.24
SHMT2-229ENST00000557348 ACYP2P14621 99 aa7.29□□□□□ -1.24
SHMT2-229ENST00000557348 KRTAP10-4P60372 401 aaPredicted RBP7.29□□□□□ -1.24
SHMT2-229ENST00000557348 LINC00304Q8N9R0 145 aa7.28□□□□□ -1.24
SHMT2-229ENST00000557348 PCOTHQ58A44 107 aa7.28□□□□□ -1.24
SHMT2-229ENST00000557348 DYNC1H1Q14204 4646 aaKnown RBP7.27□□□□□ -1.25
SHMT2-229ENST00000557348 HERC2O95714 4834 aa7.26□□□□□ -1.25
SHMT2-229ENST00000557348 PRR26Q8N8Z3 221 aa7.25□□□□□ -1.25
SHMT2-229ENST00000557348 LRP1BQ9NZR2 4599 aa7.24□□□□□ -1.25
SHMT2-229ENST00000557348 SPINK7P58062 85 aa7.22□□□□□ -1.25
SHMT2-229ENST00000557348 LINC00313P59037 77 aa7.22□□□□□ -1.25
SHMT2-229ENST00000557348 KIAA1109Q2LD37 5005 aa7.21□□□□□ -1.25
SHMT2-229ENST00000557348 DMAC1Q96GE9 116 aa7.19□□□□□ -1.26
SHMT2-229ENST00000557348 VPS13BQ7Z7G8 4022 aa7.18□□□□□ -1.26
SHMT2-229ENST00000557348 KRTAP13-3Q3SY46 172 aa7.18□□□□□ -1.26
SHMT2-229ENST00000557348 Q5VSD8 79 aa7.18□□□□□ -1.26
SHMT2-229ENST00000557348 SPATA8Q6RVD6 105 aa7.18□□□□□ -1.26
SHMT2-229ENST00000557348 NOTCH2NLQ7Z3S9 236 aa7.16□□□□□ -1.26
SHMT2-229ENST00000557348 RYR1P21817 5038 aa7.15□□□□□ -1.26
SHMT2-229ENST00000557348 A0A1B0GU69 56 aa7.12□□□□□ -1.27
SHMT2-229ENST00000557348 UQCR11O14957 56 aa7.12□□□□□ -1.27
SHMT2-229ENST00000557348 HSPG2P98160 4391 aa7.11□□□□□ -1.27
SHMT2-229ENST00000557348 APOBP04114 4563 aaKnown RBP7.1□□□□□ -1.27
SHMT2-229ENST00000557348 LINC01554Q52M75 96 aa7.09□□□□□ -1.27
SHMT2-229ENST00000557348 KRTAP17-1Q9BYP8 105 aa7.09□□□□□ -1.27
SHMT2-229ENST00000557348 KRTAP16-1A8MUX0 517 aa7.08□□□□□ -1.28
SHMT2-229ENST00000557348 Q8N1X5 172 aa7.08□□□□□ -1.28
SHMT2-229ENST00000557348 RETNLBQ9BQ08 111 aa7.06□□□□□ -1.28
SHMT2-229ENST00000557348 KRTAP10-8P60410 259 aa7.06□□□□□ -1.28
SHMT2-229ENST00000557348 MIR22HGQ0VDD5 57 aa7.05□□□□□ -1.28
SHMT2-229ENST00000557348 KRTAP4-5Q9BYR2 181 aa7.05□□□□□ -1.28
SHMT2-229ENST00000557348 PCLOQ9Y6V0 5065 aa7.04□□□□□ -1.28
SHMT2-229ENST00000557348 IGKV2-30P06310 120 aa7.03□□□□□ -1.28
SHMT2-229ENST00000557348 Q5W150 140 aa7.03□□□□□ -1.28
SHMT2-229ENST00000557348 ABCA13Q86UQ4 5058 aa7.02□□□□□ -1.29
SHMT2-229ENST00000557348 C20orf166-AS1Q96NR2 134 aa6.96□□□□□ -1.29
SHMT2-229ENST00000557348 FAT1Q14517 4588 aa6.95□□□□□ -1.3
SHMT2-229ENST00000557348 A8MUU9 505 aa6.95□□□□□ -1.3
SHMT2-229ENST00000557348 PKHD1L1Q86WI1 4243 aa6.93□□□□□ -1.3
SHMT2-229ENST00000557348 PRAC1Q96KF2 57 aa6.91□□□□□ -1.3
SHMT2-229ENST00000557348 FLG2Q5D862 2391 aaPredicted RBP6.91□□□□□ -1.3
SHMT2-229ENST00000557348 IGKV2D-30A0A075B6S6 120 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms