RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 LPAP08519 4548 aa8.09□□□□□ -1.11
SHMT2-217ENST00000555116 CXCL6P80162 114 aa8.06□□□□□ -1.12
SHMT2-217ENST00000555116 A0A1W2PNM2 257 aa8.06□□□□□ -1.12
SHMT2-217ENST00000555116 IGLV7-46A0A075B6I9 117 aa8.04□□□□□ -1.12
SHMT2-217ENST00000555116 A0A1B0GW54 56 aa8.04□□□□□ -1.12
SHMT2-217ENST00000555116 TRAV7A0A075B6U4 112 aa8.04□□□□□ -1.12
SHMT2-217ENST00000555116 UBR4Q5T4S7 5183 aa8.04□□□□□ -1.12
SHMT2-217ENST00000555116 F8WEM9 126 aa8.03□□□□□ -1.12
SHMT2-217ENST00000555116 FP248Q71RG6 208 aaPredicted RBP8.03□□□□□ -1.12
SHMT2-217ENST00000555116 CYSTM1Q9H1C7 97 aa8.03□□□□□ -1.12
SHMT2-217ENST00000555116 CD164Q04900 197 aa8.02□□□□□ -1.12
SHMT2-217ENST00000555116 NREPQ16612 68 aa8.02□□□□□ -1.12
SHMT2-217ENST00000555116 C5orf47Q569G3 176 aa8.02□□□□□ -1.12
SHMT2-217ENST00000555116 HRCT1Q6UXD1 115 aa8.02□□□□□ -1.12
SHMT2-217ENST00000555116 IGLV8-61A0A075B6I0 122 aa8.02□□□□□ -1.13
SHMT2-217ENST00000555116 A0A0G2JQZ4 141 aa8.02□□□□□ -1.13
SHMT2-217ENST00000555116 TPRXLQ17RH7 258 aa8□□□□□ -1.13
SHMT2-217ENST00000555116 IGFL1Q6UW32 110 aa8□□□□□ -1.13
SHMT2-217ENST00000555116 C20orf197Q8N268 126 aa7.99□□□□□ -1.13
SHMT2-217ENST00000555116 LIMD2Q9BT23 127 aa7.98□□□□□ -1.13
SHMT2-217ENST00000555116 FAM236DA0A1B0GTK5 79 aa7.97□□□□□ -1.13
SHMT2-217ENST00000555116 FAM236CP0DP71 79 aa7.97□□□□□ -1.13
SHMT2-217ENST00000555116 BPY2O14599 106 aa7.96□□□□□ -1.14
SHMT2-217ENST00000555116 Q5XG85 94 aa7.96□□□□□ -1.14
SHMT2-217ENST00000555116 KLKP1Q107X0 134 aa7.95□□□□□ -1.14
SHMT2-217ENST00000555116 KRTAP13-3Q3SY46 172 aa7.94□□□□□ -1.14
SHMT2-217ENST00000555116 NDUFC1O43677 76 aa7.94□□□□□ -1.14
SHMT2-217ENST00000555116 IGKV4-1P06312 121 aa7.93□□□□□ -1.14
SHMT2-217ENST00000555116 Q8N9L7 120 aa7.93□□□□□ -1.14
SHMT2-217ENST00000555116 SERP1Q9Y6X1 66 aa7.93□□□□□ -1.14
SHMT2-217ENST00000555116 H7BZZ5 65 aa7.9□□□□□ -1.14
SHMT2-217ENST00000555116 ATP5EP56381 51 aaPredicted RBP7.89□□□□□ -1.15
SHMT2-217ENST00000555116 C1orf195Q5TG92 126 aa7.89□□□□□ -1.15
SHMT2-217ENST00000555116 A0A087WSZ3 146 aa7.88□□□□□ -1.15
SHMT2-217ENST00000555116 DSCR10P59022 87 aa7.87□□□□□ -1.15
SHMT2-217ENST00000555116 ASB16-AS1Q495Z4 193 aa7.85□□□□□ -1.15
SHMT2-217ENST00000555116 RNF213Q63HN8 5207 aa7.84□□□□□ -1.15
SHMT2-217ENST00000555116 SNURFQ9Y675 71 aa7.84□□□□□ -1.15
SHMT2-217ENST00000555116 C4orf26Q17RF5 130 aa7.83□□□□□ -1.16
SHMT2-217ENST00000555116 SMIM26A0A096LP01 95 aa7.82□□□□□ -1.16
SHMT2-217ENST00000555116 K7EQZ3 153 aa7.82□□□□□ -1.16
SHMT2-217ENST00000555116 DEFB116Q30KQ4 102 aa7.82□□□□□ -1.16
SHMT2-217ENST00000555116 MUC17Q685J3 4493 aa7.81□□□□□ -1.16
SHMT2-217ENST00000555116 TMEM254Q8TBM7 123 aa7.81□□□□□ -1.16
SHMT2-217ENST00000555116 XP32Q5T750 250 aa7.8□□□□□ -1.16
SHMT2-217ENST00000555116 LINC00472Q9H8W2 130 aa7.79□□□□□ -1.16
SHMT2-217ENST00000555116 C9orf92A6NGG3 77 aa7.78□□□□□ -1.16
SHMT2-217ENST00000555116 OCR1Q9BZK8 76 aa7.77□□□□□ -1.17
SHMT2-217ENST00000555116 A0A0U1RQV1 116 aa7.74□□□□□ -1.17
SHMT2-217ENST00000555116 HCG22E2RYF7 251 aa7.74□□□□□ -1.17
SHMT2-217ENST00000555116 SEC61BP60468 96 aaKnown RBP7.72□□□□□ -1.17
SHMT2-217ENST00000555116 A8MWP4 228 aa7.72□□□□□ -1.17
SHMT2-217ENST00000555116 Q96NJ1 140 aa7.72□□□□□ -1.17
SHMT2-217ENST00000555116 PRR15Q8IV56 129 aa7.71□□□□□ -1.18
SHMT2-217ENST00000555116 MUC2Q02817 5179 aa7.68□□□□□ -1.18
SHMT2-217ENST00000555116 WFDC13Q8IUB5 93 aa7.68□□□□□ -1.18
SHMT2-217ENST00000555116 KRTAP4-1Q9BYQ7 146 aa7.68□□□□□ -1.18
SHMT2-217ENST00000555116 PRO0628Q9UI54 55 aa7.68□□□□□ -1.18
SHMT2-217ENST00000555116 NDUFB1O75438 58 aa7.65□□□□□ -1.18
SHMT2-217ENST00000555116 CASC2Q6XLA1 102 aa7.64□□□□□ -1.19
SHMT2-217ENST00000555116 RPL37P61927 97 aaKnown RBP7.64□□□□□ -1.19
SHMT2-217ENST00000555116 PCOTHQ58A44 107 aa7.64□□□□□ -1.19
SHMT2-217ENST00000555116 MMP24-AS1A0A0U1RRL7 71 aa7.62□□□□□ -1.19
SHMT2-217ENST00000555116 A0A1B0GVX0 72 aa7.58□□□□□ -1.2
SHMT2-217ENST00000555116 hDV103S1A0JD37 113 aa7.58□□□□□ -1.2
SHMT2-217ENST00000555116 Q75L30 129 aa7.57□□□□□ -1.2
SHMT2-217ENST00000555116 ZCCHC13Q8WW36 166 aaKnown RBP7.57□□□□□ -1.2
SHMT2-217ENST00000555116 C8orf17Q9NRJ1 99 aa7.57□□□□□ -1.2
SHMT2-217ENST00000555116 IGHV6-1A0A0B4J1U7 121 aa7.56□□□□□ -1.2
SHMT2-217ENST00000555116 MPLKIPQ8TAP9 179 aa7.55□□□□□ -1.2
SHMT2-217ENST00000555116 MP68P56378 58 aa7.55□□□□□ -1.2
SHMT2-217ENST00000555116 C20orf166-AS1Q96NR2 134 aa7.54□□□□□ -1.2
SHMT2-217ENST00000555116 FAT4Q6V0I7 4981 aa7.54□□□□□ -1.2
SHMT2-217ENST00000555116 A8MUU9 505 aa7.53□□□□□ -1.2
SHMT2-217ENST00000555116 CYP4F30PQ9H0H9 118 aa7.53□□□□□ -1.2
SHMT2-217ENST00000555116 LINC00313P59037 77 aa7.52□□□□□ -1.21
SHMT2-217ENST00000555116 NOTCH2NLQ7Z3S9 236 aa7.52□□□□□ -1.21
SHMT2-217ENST00000555116 BRK1Q8WUW1 75 aa7.52□□□□□ -1.21
SHMT2-217ENST00000555116 KRTAP16-1A8MUX0 517 aa7.51□□□□□ -1.21
SHMT2-217ENST00000555116 H3BPC8 53 aa7.51□□□□□ -1.21
SHMT2-217ENST00000555116 H0Y9P7 68 aa7.5□□□□□ -1.21
SHMT2-217ENST00000555116 Q1T7F1 81 aa7.5□□□□□ -1.21
SHMT2-217ENST00000555116 LCE2AQ5TA79 106 aaPredicted RBP7.49□□□□□ -1.21
SHMT2-217ENST00000555116 C1orf64Q8NEQ6 169 aa7.49□□□□□ -1.21
SHMT2-217ENST00000555116 ATP11AUNQ6ZP68 121 aa7.49□□□□□ -1.21
SHMT2-217ENST00000555116 LINC00208Q96KT6 92 aa7.48□□□□□ -1.21
SHMT2-217ENST00000555116 MRPL34Q9BQ48 92 aaKnown RBP7.48□□□□□ -1.21
SHMT2-217ENST00000555116 TP53AIP1Q9HCN2 124 aa7.48□□□□□ -1.21
SHMT2-217ENST00000555116 V9GYY9 64 aa7.47□□□□□ -1.21
SHMT2-217ENST00000555116 KRTAP19-2Q3LHN2 52 aa7.47□□□□□ -1.21
SHMT2-217ENST00000555116 TRAV22A0A0B4J277 110 aa7.46□□□□□ -1.22
SHMT2-217ENST00000555116 C8orf87E5RJ46 101 aa7.46□□□□□ -1.22
SHMT2-217ENST00000555116 NDUFS5O43920 106 aa7.44□□□□□ -1.22
SHMT2-217ENST00000555116 LCE2CQ5TA81 110 aa7.44□□□□□ -1.22
SHMT2-217ENST00000555116 SPANXA2-OT1Q8N9U9 137 aa7.44□□□□□ -1.22
SHMT2-217ENST00000555116 Q8N9P0 234 aaPredicted RBP7.34□□□□□ -1.23
SHMT2-217ENST00000555116 Q5W150 140 aa7.34□□□□□ -1.23
SHMT2-217ENST00000555116 PSPHP1O15172 72 aa7.32□□□□□ -1.24
SHMT2-217ENST00000555116 MT1HP80294 61 aa7.32□□□□□ -1.24
SHMT2-217ENST00000555116 H3BS24 57 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms