RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MT1HP80294 61 aa6.05□□□□□ -1.44
CCDC88C-208ENST00000554165 ATP11AUNQ6ZP68 121 aa6.05□□□□□ -1.44
CCDC88C-208ENST00000554165 C20orf166-AS1Q96NR2 134 aa6.05□□□□□ -1.44
CCDC88C-208ENST00000554165 KRTAP16-1A8MUX0 517 aa6.04□□□□□ -1.44
CCDC88C-208ENST00000554165 C9JAW5 83 aa6.04□□□□□ -1.44
CCDC88C-208ENST00000554165 TAX1BP3O14907 124 aa6.03□□□□□ -1.44
CCDC88C-208ENST00000554165 LINC00313P59037 77 aa6.02□□□□□ -1.45
CCDC88C-208ENST00000554165 Q6ZQT0 140 aa6.02□□□□□ -1.45
CCDC88C-208ENST00000554165 IGHV6-1A0A0B4J1U7 121 aa6.01□□□□□ -1.45
CCDC88C-208ENST00000554165 C9orf118A6NHY6 69 aa6.01□□□□□ -1.45
CCDC88C-208ENST00000554165 MTURNQ8N3F0 131 aa6.01□□□□□ -1.45
CCDC88C-208ENST00000554165 C14orf132Q9NPU4 83 aa6.01□□□□□ -1.45
CCDC88C-208ENST00000554165 TRBV20-1A0A075B6N2 111 aa5.99□□□□□ -1.45
CCDC88C-208ENST00000554165 LOC110117498A0A087WWA1 95 aa5.99□□□□□ -1.45
CCDC88C-208ENST00000554165 A0A1W2PPM0 123 aa5.98□□□□□ -1.45
CCDC88C-208ENST00000554165 JMJD7-PLA2G4BH0Y9G9 81 aa5.98□□□□□ -1.45
CCDC88C-208ENST00000554165 LYRM7Q5U5X0 104 aa5.98□□□□□ -1.45
CCDC88C-208ENST00000554165 COX6B2Q6YFQ2 88 aa5.98□□□□□ -1.45
CCDC88C-208ENST00000554165 A0A1B0GVX0 72 aa5.97□□□□□ -1.45
CCDC88C-208ENST00000554165 FLGP20930 4061 aaPredicted RBP5.96□□□□□ -1.45
CCDC88C-208ENST00000554165 KRTAP19-1Q8IUB9 90 aa5.96□□□□□ -1.46
CCDC88C-208ENST00000554165 KRTAP9-9Q9BYP9 154 aa5.95□□□□□ -1.46
CCDC88C-208ENST00000554165 KRTAP9-4Q9BYQ2 154 aa5.95□□□□□ -1.46
CCDC88C-208ENST00000554165 H3BS24 57 aa5.94□□□□□ -1.46
CCDC88C-208ENST00000554165 C8orf87E5RJ46 101 aa5.92□□□□□ -1.46
CCDC88C-208ENST00000554165 H3BT86 120 aa5.92□□□□□ -1.46
CCDC88C-208ENST00000554165 J3KT08 172 aa5.92□□□□□ -1.46
CCDC88C-208ENST00000554165 M0R2T5 61 aa5.92□□□□□ -1.46
CCDC88C-208ENST00000554165 PDE6GP18545 87 aa5.92□□□□□ -1.46
CCDC88C-208ENST00000554165 KRTAP10-6P60371 365 aaPredicted RBP5.92□□□□□ -1.46
CCDC88C-208ENST00000554165 IGKV3D-7A0A0C4DH55 119 aa5.91□□□□□ -1.46
CCDC88C-208ENST00000554165 SPCS1Q9Y6A9 102 aa5.9□□□□□ -1.46
CCDC88C-208ENST00000554165 KRTAP4-8A0A0G2JLE6 195 aa5.89□□□□□ -1.47
CCDC88C-208ENST00000554165 A8MWP4 228 aa5.89□□□□□ -1.47
CCDC88C-208ENST00000554165 NREPQ16612 68 aa5.89□□□□□ -1.47
CCDC88C-208ENST00000554165 A0A1B0GW54 56 aa5.88□□□□□ -1.47
CCDC88C-208ENST00000554165 C8orf17Q9NRJ1 99 aa5.88□□□□□ -1.47
CCDC88C-208ENST00000554165 NDUFB1O75438 58 aa5.87□□□□□ -1.47
CCDC88C-208ENST00000554165 COL5A1-AS1Q5SY13 56 aa5.87□□□□□ -1.47
CCDC88C-208ENST00000554165 HRES1P13985 223 aa5.86□□□□□ -1.47
CCDC88C-208ENST00000554165 PRR15Q8IV56 129 aa5.85□□□□□ -1.47
CCDC88C-208ENST00000554165 ZCCHC13Q8WW36 166 aaKnown RBP5.85□□□□□ -1.47
CCDC88C-208ENST00000554165 PRO0461Q9UI25 63 aa5.85□□□□□ -1.47
CCDC88C-208ENST00000554165 PCP4L1A6NKN8 68 aa5.84□□□□□ -1.47
CCDC88C-208ENST00000554165 Q8N9P0 234 aaPredicted RBP5.84□□□□□ -1.47
CCDC88C-208ENST00000554165 MPLKIPQ8TAP9 179 aa5.84□□□□□ -1.47
CCDC88C-208ENST00000554165 Q6ZVQ6 151 aa5.83□□□□□ -1.48
CCDC88C-208ENST00000554165 MMP24-AS1A0A0U1RRL7 71 aa5.82□□□□□ -1.48
CCDC88C-208ENST00000554165 K7EP34 96 aa5.82□□□□□ -1.48
CCDC88C-208ENST00000554165 K7EQZ3 153 aa5.82□□□□□ -1.48
CCDC88C-208ENST00000554165 FSIP2Q5CZC0 6907 aa5.81□□□□□ -1.48
CCDC88C-208ENST00000554165 SPINK7P58062 85 aa5.8□□□□□ -1.48
CCDC88C-208ENST00000554165 FAM236DA0A1B0GTK5 79 aa5.79□□□□□ -1.48
CCDC88C-208ENST00000554165 FAM236CP0DP71 79 aa5.79□□□□□ -1.48
CCDC88C-208ENST00000554165 Q8N9L7 120 aa5.79□□□□□ -1.48
CCDC88C-208ENST00000554165 BPY2O14599 106 aa5.78□□□□□ -1.48
CCDC88C-208ENST00000554165 TMEM254Q8TBM7 123 aa5.76□□□□□ -1.49
CCDC88C-208ENST00000554165 MRPL34Q9BQ48 92 aaKnown RBP5.76□□□□□ -1.49
CCDC88C-208ENST00000554165 LINC00846Q9NV44 126 aa5.76□□□□□ -1.49
CCDC88C-208ENST00000554165 RBM12B-AS1Q9P1G2 102 aa5.76□□□□□ -1.49
CCDC88C-208ENST00000554165 hDV103S1A0JD37 113 aa5.75□□□□□ -1.49
CCDC88C-208ENST00000554165 KRTAP9-8Q9BYQ0 159 aa5.75□□□□□ -1.49
CCDC88C-208ENST00000554165 NDUFS5O43920 106 aa5.73□□□□□ -1.49
CCDC88C-208ENST00000554165 WFDC13Q8IUB5 93 aa5.73□□□□□ -1.49
CCDC88C-208ENST00000554165 Q5W150 140 aa5.71□□□□□ -1.5
CCDC88C-208ENST00000554165 GTF2H5Q6ZYL4 71 aa5.71□□□□□ -1.5
CCDC88C-208ENST00000554165 CRCT1Q9UGL9 99 aa5.71□□□□□ -1.5
CCDC88C-208ENST00000554165 ETDBQ3ZM63 59 aa5.7□□□□□ -1.5
CCDC88C-208ENST00000554165 LCE1DQ5T752 114 aa5.69□□□□□ -1.5
CCDC88C-208ENST00000554165 CASC2Q6XLA1 102 aa5.69□□□□□ -1.5
CCDC88C-208ENST00000554165 KRTAP4-7Q9BYR0 210 aa5.69□□□□□ -1.5
CCDC88C-208ENST00000554165 USH2AO75445 5202 aa5.68□□□□□ -1.5
CCDC88C-208ENST00000554165 MT2AP02795 61 aa5.68□□□□□ -1.5
CCDC88C-208ENST00000554165 UBL5Q9BZL1 73 aa5.68□□□□□ -1.5
CCDC88C-208ENST00000554165 F8W1H4 67 aa5.67□□□□□ -1.5
CCDC88C-208ENST00000554165 HCG22E2RYF7 251 aa5.66□□□□□ -1.5
CCDC88C-208ENST00000554165 IGKV2D-30A0A075B6S6 120 aa5.65□□□□□ -1.5
CCDC88C-208ENST00000554165 MT1FP04733 61 aa5.65□□□□□ -1.5
CCDC88C-208ENST00000554165 IGKV2-30P06310 120 aa5.65□□□□□ -1.5
CCDC88C-208ENST00000554165 KRTAP10-10P60014 251 aa5.59□□□□□ -1.51
CCDC88C-208ENST00000554165 C7orf65Q6ZTY9 151 aa5.58□□□□□ -1.52
CCDC88C-208ENST00000554165 SSPOA2VEC9 5147 aa5.58□□□□□ -1.52
CCDC88C-208ENST00000554165 CXCL6P80162 114 aa5.57□□□□□ -1.52
CCDC88C-208ENST00000554165 KRTAP9-3Q9BYQ3 159 aa5.57□□□□□ -1.52
CCDC88C-208ENST00000554165 C4orf26Q17RF5 130 aa5.56□□□□□ -1.52
CCDC88C-208ENST00000554165 H1FX-AS1Q4G0G2 97 aa5.56□□□□□ -1.52
CCDC88C-208ENST00000554165 KRTAP4-9Q9BYQ8 210 aa5.55□□□□□ -1.52
CCDC88C-208ENST00000554165 A0A1B0GV90 55 aa5.52□□□□□ -1.53
CCDC88C-208ENST00000554165 KRTAP3-1Q9BYR8 98 aa5.51□□□□□ -1.53
CCDC88C-208ENST00000554165 ACYP1P07311 99 aa5.48□□□□□ -1.53
CCDC88C-208ENST00000554165 FCGBPQ9Y6R7 5405 aaPredicted RBP5.47□□□□□ -1.53
CCDC88C-208ENST00000554165 FAM240AA0A1B0GVK7 77 aa5.47□□□□□ -1.53
CCDC88C-208ENST00000554165 TP53AIP1Q9HCN2 124 aa5.47□□□□□ -1.53
CCDC88C-208ENST00000554165 HIST1H4AP62805 103 aaKnown RBP5.44□□□□□ -1.54
CCDC88C-208ENST00000554165 C1orf64Q8NEQ6 169 aa5.44□□□□□ -1.54
CCDC88C-208ENST00000554165 KRTAP4-2Q9BYR5 136 aa5.44□□□□□ -1.54
CCDC88C-208ENST00000554165 C5orf47Q569G3 176 aa5.43□□□□□ -1.54
CCDC88C-208ENST00000554165 A0A087WVE0 104 aa5.42□□□□□ -1.54
CCDC88C-208ENST00000554165 ATP5EP2Q5VTU8 51 aa5.42□□□□□ -1.54
CCDC88C-208ENST00000554165 CYP4F30PQ9H0H9 118 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms