RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 AKR1D1P51857 326 aa1.61□□□□□ -2.15
LIMA1-208ENST00000551691 KRTAP12-1P59990 96 aa1.61□□□□□ -2.15
LIMA1-208ENST00000551691 SPANXN1Q5VSR9 72 aa1.61□□□□□ -2.15
LIMA1-208ENST00000551691 Q5XG85 94 aa1.61□□□□□ -2.15
LIMA1-208ENST00000551691 SCP2D1Q9UJQ7 156 aa1.61□□□□□ -2.15
LIMA1-208ENST00000551691 TNFSF18Q9UNG2 199 aa1.61□□□□□ -2.15
LIMA1-208ENST00000551691 CLLU1Q5K131 121 aa1.6□□□□□ -2.15
LIMA1-208ENST00000551691 RPL39LQ96EH5 51 aaKnown RBP1.6□□□□□ -2.15
LIMA1-208ENST00000551691 SPRR4Q96PI1 79 aa1.6□□□□□ -2.15
LIMA1-208ENST00000551691 ZNF727A8MUV8 499 aa1.59□□□□□ -2.15
LIMA1-208ENST00000551691 IGLC6P0CF74 106 aa1.59□□□□□ -2.15
LIMA1-208ENST00000551691 KRTAP5-10Q6L8G5 202 aa1.59□□□□□ -2.15
LIMA1-208ENST00000551691 S100ZQ8WXG8 99 aa1.59□□□□□ -2.15
LIMA1-208ENST00000551691 CYSTM1Q9H1C7 97 aa1.59□□□□□ -2.15
LIMA1-208ENST00000551691 TRAV23DV6A0A075B6W5 121 aa1.58□□□□□ -2.16
LIMA1-208ENST00000551691 ZNF25P17030 456 aaPredicted RBP1.58□□□□□ -2.16
LIMA1-208ENST00000551691 FAM19A2Q8N3H0 131 aa1.58□□□□□ -2.16
LIMA1-208ENST00000551691 PSMG3Q9BT73 122 aaPredicted RBP1.58□□□□□ -2.16
LIMA1-208ENST00000551691 A0A087WXM4 84 aa1.57□□□□□ -2.16
LIMA1-208ENST00000551691 NCR2O95944 276 aa1.57□□□□□ -2.16
LIMA1-208ENST00000551691 SSBP1Q04837 148 aaKnown RBP1.57□□□□□ -2.16
LIMA1-208ENST00000551691 ATOH7Q8N100 152 aa1.57□□□□□ -2.16
LIMA1-208ENST00000551691 SMIM4Q8WVI0 70 aa1.57□□□□□ -2.16
LIMA1-208ENST00000551691 ZFP30Q9Y2G7 519 aa1.57□□□□□ -2.16
LIMA1-208ENST00000551691 PIGBOS1A0A0B4J2F0 54 aa1.56□□□□□ -2.16
LIMA1-208ENST00000551691 INE1O15225 51 aa1.56□□□□□ -2.16
LIMA1-208ENST00000551691 GCHFRP30047 84 aa1.56□□□□□ -2.16
LIMA1-208ENST00000551691 Q6ZUT4 128 aa1.56□□□□□ -2.16
LIMA1-208ENST00000551691 TMEM242Q9NWH2 141 aa1.56□□□□□ -2.16
LIMA1-208ENST00000551691 TRBV30A0A0K0K1B3 111 aa1.55□□□□□ -2.16
LIMA1-208ENST00000551691 JMJD7-PLA2G4BH0Y9G9 81 aa1.55□□□□□ -2.16
LIMA1-208ENST00000551691 I3L3M4 83 aa1.55□□□□□ -2.16
LIMA1-208ENST00000551691 RPS29P62273 56 aaKnown RBP1.55□□□□□ -2.16
LIMA1-208ENST00000551691 SSBP3-AS1Q7Z2R9 100 aa1.55□□□□□ -2.16
LIMA1-208ENST00000551691 ERG28Q9UKR5 140 aa1.55□□□□□ -2.16
LIMA1-208ENST00000551691 LOC110117498A0A087WWA1 95 aa1.54□□□□□ -2.16
LIMA1-208ENST00000551691 MT1BP07438 61 aa1.54□□□□□ -2.16
LIMA1-208ENST00000551691 KRTAP12-3P60328 96 aa1.54□□□□□ -2.16
LIMA1-208ENST00000551691 MRPS10P82664 201 aaKnown RBP1.54□□□□□ -2.16
LIMA1-208ENST00000551691 SPATA45Q537H7 98 aa1.54□□□□□ -2.16
LIMA1-208ENST00000551691 KCNRGQ8N5I3 272 aa1.54□□□□□ -2.16
LIMA1-208ENST00000551691 TOMM7Q9P0U1 55 aa1.54□□□□□ -2.16
LIMA1-208ENST00000551691 TRBV20-1A0A075B6N2 111 aa1.53□□□□□ -2.16
LIMA1-208ENST00000551691 FAM236AA0A1B0GUQ0 79 aa1.53□□□□□ -2.16
LIMA1-208ENST00000551691 FAM236BA0A1B0GV22 79 aa1.53□□□□□ -2.16
LIMA1-208ENST00000551691 IL7P13232 177 aa1.53□□□□□ -2.16
LIMA1-208ENST00000551691 ADCYAP1P18509 176 aa1.53□□□□□ -2.16
LIMA1-208ENST00000551691 ATP11AUNQ6ZP68 121 aa1.53□□□□□ -2.16
LIMA1-208ENST00000551691 TCEAL7Q9BRU2 100 aa1.53□□□□□ -2.16
LIMA1-208ENST00000551691 NDUFB6O95139 128 aa1.52□□□□□ -2.17
LIMA1-208ENST00000551691 SIX6O95475 246 aa1.52□□□□□ -2.17
LIMA1-208ENST00000551691 UBE2G1P62253 170 aa1.52□□□□□ -2.17
LIMA1-208ENST00000551691 RPL39P62891 51 aaKnown RBP1.52□□□□□ -2.17
LIMA1-208ENST00000551691 TOMM5Q8N4H5 51 aa1.52□□□□□ -2.17
LIMA1-208ENST00000551691 COPS9Q8WXC6 57 aa1.52□□□□□ -2.17
LIMA1-208ENST00000551691 TMEM191AQ9H0A3 160 aa1.52□□□□□ -2.17
LIMA1-208ENST00000551691 C7orf77A4D0Y5 90 aa1.51□□□□□ -2.17
LIMA1-208ENST00000551691 POLR2KP53803 58 aaKnown RBP1.51□□□□□ -2.17
LIMA1-208ENST00000551691 C9orf153Q5TBE3 101 aa1.51□□□□□ -2.17
LIMA1-208ENST00000551691 BAGE2Q86Y30 109 aa1.51□□□□□ -2.17
LIMA1-208ENST00000551691 OBSCN-AS1Q96MR7 158 aa1.51□□□□□ -2.17
LIMA1-208ENST00000551691 S100A8P05109 93 aa1.5□□□□□ -2.17
LIMA1-208ENST00000551691 FAUP35544 74 aaKnown RBP1.5□□□□□ -2.17
LIMA1-208ENST00000551691 MT4P47944 62 aa1.5□□□□□ -2.17
LIMA1-208ENST00000551691 OCIAD2Q56VL3 154 aa1.5□□□□□ -2.17
LIMA1-208ENST00000551691 LINC01545Q5VT33 79 aa1.5□□□□□ -2.17
LIMA1-208ENST00000551691 RPL7L1Q6DKI1 246 aaKnown RBP1.5□□□□□ -2.17
LIMA1-208ENST00000551691 ST20Q9HBF5 79 aa1.5□□□□□ -2.17
LIMA1-208ENST00000551691 TMEM167BQ9NRX6 74 aa1.5□□□□□ -2.17
LIMA1-208ENST00000551691 AHNAKQ09666 5890 aaKnown RBP1.5□□□□□ -2.17
LIMA1-208ENST00000551691 FXYD6-FXYD2A0A087WZ82 144 aa1.49□□□□□ -2.17
LIMA1-208ENST00000551691 S100PP25815 95 aa1.49□□□□□ -2.17
LIMA1-208ENST00000551691 FCER1GP30273 86 aa1.49□□□□□ -2.17
LIMA1-208ENST00000551691 KRTAP8-1Q8IUC2 63 aa1.49□□□□□ -2.17
LIMA1-208ENST00000551691 PPDPFLQ8WWR9 84 aa1.49□□□□□ -2.17
LIMA1-208ENST00000551691 LIMD2Q9BT23 127 aa1.49□□□□□ -2.17
LIMA1-208ENST00000551691 F2Z2F3 143 aa1.48□□□□□ -2.17
LIMA1-208ENST00000551691 F8VRH5 84 aa1.48□□□□□ -2.17
LIMA1-208ENST00000551691 NCR3O14931 201 aa1.48□□□□□ -2.17
LIMA1-208ENST00000551691 SNCGO76070 127 aa1.48□□□□□ -2.17
LIMA1-208ENST00000551691 IGKCP01834 107 aa1.48□□□□□ -2.17
LIMA1-208ENST00000551691 C9orf62Q8N4C0 152 aa1.48□□□□□ -2.17
LIMA1-208ENST00000551691 NAP1L6A6NFF2 107 aa1.47□□□□□ -2.17
LIMA1-208ENST00000551691 KRTAP21-2Q3LI59 83 aa1.47□□□□□ -2.17
LIMA1-208ENST00000551691 CSAG1Q6PB30 78 aa1.47□□□□□ -2.17
LIMA1-208ENST00000551691 SVBPQ8N300 66 aa1.47□□□□□ -2.17
LIMA1-208ENST00000551691 DMAC1Q96GE9 116 aa1.47□□□□□ -2.17
LIMA1-208ENST00000551691 HIGD1CA8MV81 97 aa1.46□□□□□ -2.18
LIMA1-208ENST00000551691 CCDC179H3BU77 68 aa1.46□□□□□ -2.18
LIMA1-208ENST00000551691 SMIM6P0DI80 62 aa1.46□□□□□ -2.18
LIMA1-208ENST00000551691 PDE6GP18545 87 aa1.46□□□□□ -2.18
LIMA1-208ENST00000551691 Q5VV11 94 aa1.46□□□□□ -2.18
LIMA1-208ENST00000551691 Q8IZM0 81 aa1.46□□□□□ -2.18
LIMA1-208ENST00000551691 V9GYH0 126 aa1.46□□□□□ -2.18
LIMA1-208ENST00000551691 KANTRA0A1W2PQU2 76 aa1.45□□□□□ -2.18
LIMA1-208ENST00000551691 TMEM218A2RU14 115 aa1.45□□□□□ -2.18
LIMA1-208ENST00000551691 Q96NJ1 140 aa1.45□□□□□ -2.18
LIMA1-208ENST00000551691 C12orf57Q99622 126 aa1.45□□□□□ -2.18
LIMA1-208ENST00000551691 CDKN2A-AS1Q9UH64 79 aa1.45□□□□□ -2.18
LIMA1-208ENST00000551691 CTXND1A0A1B0GTU2 59 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms