RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 LCE2AQ5TA79 106 aaPredicted RBP13.74□□□□□ -0.21
CPSF6-205ENST00000550075 MTURNQ8N3F0 131 aa13.74□□□□□ -0.21
CPSF6-205ENST00000550075 IGHV6-1A0A0B4J1U7 121 aa13.72□□□□□ -0.21
CPSF6-205ENST00000550075 A0A1B0GVX0 72 aa13.69□□□□□ -0.22
CPSF6-205ENST00000550075 C8orf87E5RJ46 101 aa13.69□□□□□ -0.22
CPSF6-205ENST00000550075 PCP4L1A6NKN8 68 aa13.65□□□□□ -0.22
CPSF6-205ENST00000550075 NDUFB1O75438 58 aa13.65□□□□□ -0.22
CPSF6-205ENST00000550075 KRTAP16-1A8MUX0 517 aa13.64□□□□□ -0.23
CPSF6-205ENST00000550075 NREPQ16612 68 aa13.61□□□□□ -0.23
CPSF6-205ENST00000550075 NOTCH2NLQ7Z3S9 236 aa13.61□□□□□ -0.23
CPSF6-205ENST00000550075 K7EP34 96 aa13.6□□□□□ -0.23
CPSF6-205ENST00000550075 A8MWP4 228 aa13.57□□□□□ -0.24
CPSF6-205ENST00000550075 KRTAP19-2Q3LHN2 52 aa13.55□□□□□ -0.24
CPSF6-205ENST00000550075 SMCPP49901 116 aaPredicted RBP13.53□□□□□ -0.24
CPSF6-205ENST00000550075 LCE2CQ5TA81 110 aa13.53□□□□□ -0.24
CPSF6-205ENST00000550075 COX6B2Q6YFQ2 88 aa13.53□□□□□ -0.24
CPSF6-205ENST00000550075 GTF2H5Q6ZYL4 71 aa13.52□□□□□ -0.25
CPSF6-205ENST00000550075 PRO0461Q9UI25 63 aa13.49□□□□□ -0.25
CPSF6-205ENST00000550075 IGKV3D-7A0A0C4DH55 119 aa13.48□□□□□ -0.25
CPSF6-205ENST00000550075 C8orf17Q9NRJ1 99 aa13.47□□□□□ -0.25
CPSF6-205ENST00000550075 PRR15Q8IV56 129 aa13.44□□□□□ -0.26
CPSF6-205ENST00000550075 BPY2O14599 106 aa13.4□□□□□ -0.26
CPSF6-205ENST00000550075 MT1HP80294 61 aa13.4□□□□□ -0.26
CPSF6-205ENST00000550075 Q6ZVQ6 151 aa13.37□□□□□ -0.27
CPSF6-205ENST00000550075 Q8N9P0 234 aaPredicted RBP13.37□□□□□ -0.27
CPSF6-205ENST00000550075 F8W1H4 67 aa13.36□□□□□ -0.27
CPSF6-205ENST00000550075 ZCCHC13Q8WW36 166 aaKnown RBP13.35□□□□□ -0.27
CPSF6-205ENST00000550075 K7EQZ3 153 aa13.34□□□□□ -0.27
CPSF6-205ENST00000550075 MMP24-AS1A0A0U1RRL7 71 aa13.31□□□□□ -0.28
CPSF6-205ENST00000550075 TMEM254Q8TBM7 123 aa13.31□□□□□ -0.28
CPSF6-205ENST00000550075 UBL5Q9BZL1 73 aa13.31□□□□□ -0.28
CPSF6-205ENST00000550075 M0R2T5 61 aa13.28□□□□□ -0.28
CPSF6-205ENST00000550075 MRPL34Q9BQ48 92 aaKnown RBP13.28□□□□□ -0.28
CPSF6-205ENST00000550075 hDV103S1A0JD37 113 aa13.26□□□□□ -0.29
CPSF6-205ENST00000550075 LINC00846Q9NV44 126 aa13.26□□□□□ -0.29
CPSF6-205ENST00000550075 FLGP20930 4061 aaPredicted RBP13.25□□□□□ -0.29
CPSF6-205ENST00000550075 ETDBQ3ZM63 59 aa13.24□□□□□ -0.29
CPSF6-205ENST00000550075 RBM12B-AS1Q9P1G2 102 aa13.22□□□□□ -0.29
CPSF6-205ENST00000550075 FAM236DA0A1B0GTK5 79 aa13.2□□□□□ -0.3
CPSF6-205ENST00000550075 FAM236CP0DP71 79 aa13.2□□□□□ -0.3
CPSF6-205ENST00000550075 NDUFS5O43920 106 aa13.18□□□□□ -0.3
CPSF6-205ENST00000550075 HRES1P13985 223 aa13.18□□□□□ -0.3
CPSF6-205ENST00000550075 Q8N9L7 120 aa13.18□□□□□ -0.3
CPSF6-205ENST00000550075 SPINK7P58062 85 aa13.15□□□□□ -0.3
CPSF6-205ENST00000550075 CASC2Q6XLA1 102 aa13.14□□□□□ -0.31
CPSF6-205ENST00000550075 KRTAP9-2Q9BYQ4 174 aa13.14□□□□□ -0.31
CPSF6-205ENST00000550075 WFDC13Q8IUB5 93 aa13.13□□□□□ -0.31
CPSF6-205ENST00000550075 MPLKIPQ8TAP9 179 aa13.13□□□□□ -0.31
CPSF6-205ENST00000550075 KRTAP10-6P60371 365 aaPredicted RBP13.1□□□□□ -0.31
CPSF6-205ENST00000550075 LORP23490 312 aaPredicted RBP13.07□□□□□ -0.32
CPSF6-205ENST00000550075 HCG22E2RYF7 251 aa13.03□□□□□ -0.32
CPSF6-205ENST00000550075 CXCL6P80162 114 aa13.03□□□□□ -0.32
CPSF6-205ENST00000550075 ACYP1P07311 99 aa13□□□□□ -0.33
CPSF6-205ENST00000550075 LCE2DQ5TA82 110 aaPredicted RBP12.95□□□□□ -0.34
CPSF6-205ENST00000550075 FAM240AA0A1B0GVK7 77 aa12.94□□□□□ -0.34
CPSF6-205ENST00000550075 C7orf65Q6ZTY9 151 aa12.91□□□□□ -0.34
CPSF6-205ENST00000550075 Q5W150 140 aa12.9□□□□□ -0.34
CPSF6-205ENST00000550075 IGKV2D-30A0A075B6S6 120 aa12.89□□□□□ -0.35
CPSF6-205ENST00000550075 A0A1B0GV90 55 aa12.89□□□□□ -0.35
CPSF6-205ENST00000550075 IGKV2-30P06310 120 aa12.89□□□□□ -0.35
CPSF6-205ENST00000550075 ATP5EP2Q5VTU8 51 aa12.85□□□□□ -0.35
CPSF6-205ENST00000550075 TP53AIP1Q9HCN2 124 aa12.81□□□□□ -0.36
CPSF6-205ENST00000550075 HIST1H4AP62805 103 aaKnown RBP12.69□□□□□ -0.38
CPSF6-205ENST00000550075 KRTAP9-8Q9BYQ0 159 aa12.69□□□□□ -0.38
CPSF6-205ENST00000550075 LINC00643Q86TS7 51 aa12.68□□□□□ -0.38
CPSF6-205ENST00000550075 H1FX-AS1Q4G0G2 97 aa12.67□□□□□ -0.38
CPSF6-205ENST00000550075 J3QR89 54 aa12.63□□□□□ -0.39
CPSF6-205ENST00000550075 KRTAP9-6A0A140TA67 174 aa12.61□□□□□ -0.39
CPSF6-205ENST00000550075 C4orf26Q17RF5 130 aa12.6□□□□□ -0.39
CPSF6-205ENST00000550075 MT2AP02795 61 aa12.58□□□□□ -0.4
CPSF6-205ENST00000550075 TRAV22A0A0B4J277 110 aa12.55□□□□□ -0.4
CPSF6-205ENST00000550075 A0A087WVE0 104 aa12.48□□□□□ -0.41
CPSF6-205ENST00000550075 UQCRQO14949 82 aa12.48□□□□□ -0.41
CPSF6-205ENST00000550075 KRTAP10-10P60014 251 aa12.48□□□□□ -0.41
CPSF6-205ENST00000550075 CRCT1Q9UGL9 99 aa12.48□□□□□ -0.41
CPSF6-205ENST00000550075 LOC101927531A0A1B0GV80 90 aa12.47□□□□□ -0.41
CPSF6-205ENST00000550075 MT1FP04733 61 aa12.46□□□□□ -0.41
CPSF6-205ENST00000550075 ATOX1O00244 68 aa12.43□□□□□ -0.42
CPSF6-205ENST00000550075 C1orf64Q8NEQ6 169 aa12.43□□□□□ -0.42
CPSF6-205ENST00000550075 CYP4F30PQ9H0H9 118 aa12.43□□□□□ -0.42
CPSF6-205ENST00000550075 H0Y9P7 68 aa12.4□□□□□ -0.42
CPSF6-205ENST00000550075 FSIP2Q5CZC0 6907 aa12.38□□□□□ -0.43
CPSF6-205ENST00000550075 KRTAP3-1Q9BYR8 98 aa12.34□□□□□ -0.43
CPSF6-205ENST00000550075 S4R3F8 94 aa12.33□□□□□ -0.44
CPSF6-205ENST00000550075 KRTAP9-3Q9BYQ3 159 aa12.29□□□□□ -0.44
CPSF6-205ENST00000550075 K7ERU9 68 aa12.25□□□□□ -0.45
CPSF6-205ENST00000550075 MP68P56378 58 aa12.25□□□□□ -0.45
CPSF6-205ENST00000550075 OCR1Q9BZK8 76 aa12.25□□□□□ -0.45
CPSF6-205ENST00000550075 C5orf47Q569G3 176 aa12.24□□□□□ -0.45
CPSF6-205ENST00000550075 LINC00208Q96KT6 92 aa12.21□□□□□ -0.45
CPSF6-205ENST00000550075 CSAG1Q6PB30 78 aa12.2□□□□□ -0.46
CPSF6-205ENST00000550075 SCGB1A1P11684 91 aa12.19□□□□□ -0.46
CPSF6-205ENST00000550075 LCA10Q71F78 164 aa12.19□□□□□ -0.46
CPSF6-205ENST00000550075 USH2AO75445 5202 aa12.17□□□□□ -0.46
CPSF6-205ENST00000550075 LCE2BO14633 110 aa12.15□□□□□ -0.46
CPSF6-205ENST00000550075 IMUPQ9GZP8 106 aa12.14□□□□□ -0.47
CPSF6-205ENST00000550075 H3BPC8 53 aa12.1□□□□□ -0.47
CPSF6-205ENST00000550075 A8MUN3 132 aa12.07□□□□□ -0.48
CPSF6-205ENST00000550075 FAM236AA0A1B0GUQ0 79 aa12.06□□□□□ -0.48
CPSF6-205ENST00000550075 FAM236BA0A1B0GV22 79 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms