RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 DSCR10P59022 87 aa11.54□□□□□ -0.56
VPS29-206ENST00000549578 UBL5Q9BZL1 73 aa11.54□□□□□ -0.56
VPS29-206ENST00000549578 A0A1B0GVX0 72 aa11.52□□□□□ -0.57
VPS29-206ENST00000549578 A8MWP4 228 aa11.51□□□□□ -0.57
VPS29-206ENST00000549578 BPY2O14599 106 aa11.5□□□□□ -0.57
VPS29-206ENST00000549578 NOTCH2NLQ7Z3S9 236 aa11.5□□□□□ -0.57
VPS29-206ENST00000549578 IGKV3D-7A0A0C4DH55 119 aa11.49□□□□□ -0.57
VPS29-206ENST00000549578 NDUFB1O75438 58 aa11.49□□□□□ -0.57
VPS29-206ENST00000549578 LINC00313P59037 77 aa11.49□□□□□ -0.57
VPS29-206ENST00000549578 FAM240AA0A1B0GVK7 77 aa11.46□□□□□ -0.57
VPS29-206ENST00000549578 ACYP1P07311 99 aa11.45□□□□□ -0.58
VPS29-206ENST00000549578 C8orf87E5RJ46 101 aa11.44□□□□□ -0.58
VPS29-206ENST00000549578 K7EQZ3 153 aa11.44□□□□□ -0.58
VPS29-206ENST00000549578 PRR15Q8IV56 129 aa11.44□□□□□ -0.58
VPS29-206ENST00000549578 KRTAP16-1A8MUX0 517 aa11.41□□□□□ -0.58
VPS29-206ENST00000549578 MUC17Q685J3 4493 aa11.41□□□□□ -0.58
VPS29-206ENST00000549578 LCE2BO14633 110 aa11.4□□□□□ -0.58
VPS29-206ENST00000549578 RPL37P61927 97 aaKnown RBP11.4□□□□□ -0.58
VPS29-206ENST00000549578 Q8N9L7 120 aa11.4□□□□□ -0.58
VPS29-206ENST00000549578 C8orf17Q9NRJ1 99 aa11.4□□□□□ -0.59
VPS29-206ENST00000549578 SEC61BP60468 96 aaKnown RBP11.39□□□□□ -0.59
VPS29-206ENST00000549578 C20orf166-AS1Q96NR2 134 aa11.37□□□□□ -0.59
VPS29-206ENST00000549578 RNF213Q63HN8 5207 aa11.37□□□□□ -0.59
VPS29-206ENST00000549578 Q75L30 129 aa11.36□□□□□ -0.59
VPS29-206ENST00000549578 A8MUU9 505 aa11.35□□□□□ -0.59
VPS29-206ENST00000549578 J3QR89 54 aa11.35□□□□□ -0.59
VPS29-206ENST00000549578 PCOTHQ58A44 107 aa11.34□□□□□ -0.59
VPS29-206ENST00000549578 MMP24-AS1A0A0U1RRL7 71 aa11.33□□□□□ -0.6
VPS29-206ENST00000549578 CXCL6P80162 114 aa11.32□□□□□ -0.6
VPS29-206ENST00000549578 ATP11AUNQ6ZP68 121 aa11.26□□□□□ -0.61
VPS29-206ENST00000549578 MUC2Q02817 5179 aa11.26□□□□□ -0.61
VPS29-206ENST00000549578 hDV103S1A0JD37 113 aa11.25□□□□□ -0.61
VPS29-206ENST00000549578 LINC00643Q86TS7 51 aa11.25□□□□□ -0.61
VPS29-206ENST00000549578 WFDC13Q8IUB5 93 aa11.25□□□□□ -0.61
VPS29-206ENST00000549578 ATP5EP2Q5VTU8 51 aa11.24□□□□□ -0.61
VPS29-206ENST00000549578 Q8N9P0 234 aaPredicted RBP11.24□□□□□ -0.61
VPS29-206ENST00000549578 TMEM254Q8TBM7 123 aa11.24□□□□□ -0.61
VPS29-206ENST00000549578 KRTAP4-1Q9BYQ7 146 aa11.24□□□□□ -0.61
VPS29-206ENST00000549578 MRPL34Q9BQ48 92 aaKnown RBP11.23□□□□□ -0.61
VPS29-206ENST00000549578 CASC2Q6XLA1 102 aa11.21□□□□□ -0.61
VPS29-206ENST00000549578 K7ERU9 68 aa11.2□□□□□ -0.62
VPS29-206ENST00000549578 HCG22E2RYF7 251 aa11.19□□□□□ -0.62
VPS29-206ENST00000549578 NDUFS5O43920 106 aa11.14□□□□□ -0.63
VPS29-206ENST00000549578 HIST1H4AP62805 103 aaKnown RBP11.14□□□□□ -0.63
VPS29-206ENST00000549578 ZCCHC13Q8WW36 166 aaKnown RBP11.11□□□□□ -0.63
VPS29-206ENST00000549578 A0A087WVE0 104 aa11.06□□□□□ -0.64
VPS29-206ENST00000549578 Q5W150 140 aa10.98□□□□□ -0.65
VPS29-206ENST00000549578 MT-ATP8P03928 68 aa10.97□□□□□ -0.65
VPS29-206ENST00000549578 TP53AIP1Q9HCN2 124 aa10.92□□□□□ -0.66
VPS29-206ENST00000549578 A0A0U1RQV1 116 aa10.91□□□□□ -0.66
VPS29-206ENST00000549578 SPINK7P58062 85 aa10.91□□□□□ -0.66
VPS29-206ENST00000549578 FAT4Q6V0I7 4981 aa10.9□□□□□ -0.66
VPS29-206ENST00000549578 IMUPQ9GZP8 106 aa10.88□□□□□ -0.67
VPS29-206ENST00000549578 KRTAP19-2Q3LHN2 52 aa10.87□□□□□ -0.67
VPS29-206ENST00000549578 HRES1P13985 223 aa10.84□□□□□ -0.67
VPS29-206ENST00000549578 IGKV2D-30A0A075B6S6 120 aa10.84□□□□□ -0.67
VPS29-206ENST00000549578 IGKV2-30P06310 120 aa10.84□□□□□ -0.67
VPS29-206ENST00000549578 LCE2AQ5TA79 106 aaPredicted RBP10.83□□□□□ -0.68
VPS29-206ENST00000549578 LCE2CQ5TA81 110 aa10.8□□□□□ -0.68
VPS29-206ENST00000549578 UQCRQO14949 82 aa10.79□□□□□ -0.68
VPS29-206ENST00000549578 C7orf65Q6ZTY9 151 aa10.79□□□□□ -0.68
VPS29-206ENST00000549578 TRAV22A0A0B4J277 110 aa10.78□□□□□ -0.68
VPS29-206ENST00000549578 COX6B2Q6YFQ2 88 aa10.78□□□□□ -0.68
VPS29-206ENST00000549578 SCGB1A1P11684 91 aa10.76□□□□□ -0.69
VPS29-206ENST00000549578 MPLKIPQ8TAP9 179 aa10.76□□□□□ -0.69
VPS29-206ENST00000549578 OCR1Q9BZK8 76 aa10.76□□□□□ -0.69
VPS29-206ENST00000549578 FAM236AA0A1B0GUQ0 79 aa10.73□□□□□ -0.69
VPS29-206ENST00000549578 FAM236BA0A1B0GV22 79 aa10.73□□□□□ -0.69
VPS29-206ENST00000549578 RBM12B-AS1Q9P1G2 102 aa10.73□□□□□ -0.69
VPS29-206ENST00000549578 H0Y9P7 68 aa10.7□□□□□ -0.7
VPS29-206ENST00000549578 FAM236DA0A1B0GTK5 79 aa10.68□□□□□ -0.7
VPS29-206ENST00000549578 FAM236CP0DP71 79 aa10.68□□□□□ -0.7
VPS29-206ENST00000549578 ATOX1O00244 68 aa10.65□□□□□ -0.7
VPS29-206ENST00000549578 LOC101927531A0A1B0GV80 90 aa10.63□□□□□ -0.71
VPS29-206ENST00000549578 MT1HP80294 61 aa10.63□□□□□ -0.71
VPS29-206ENST00000549578 CYP4F30PQ9H0H9 118 aa10.63□□□□□ -0.71
VPS29-206ENST00000549578 MP68P56378 58 aa10.59□□□□□ -0.71
VPS29-206ENST00000549578 C4orf26Q17RF5 130 aa10.59□□□□□ -0.71
VPS29-206ENST00000549578 C5orf47Q569G3 176 aa10.59□□□□□ -0.71
VPS29-206ENST00000549578 FLGP20930 4061 aaPredicted RBP10.59□□□□□ -0.71
VPS29-206ENST00000549578 C1orf64Q8NEQ6 169 aa10.58□□□□□ -0.72
VPS29-206ENST00000549578 LINC00208Q96KT6 92 aa10.58□□□□□ -0.72
VPS29-206ENST00000549578 SMIM20Q8N5G0 67 aa10.56□□□□□ -0.72
VPS29-206ENST00000549578 TRAV7A0A075B6U4 112 aa10.54□□□□□ -0.72
VPS29-206ENST00000549578 H3BPC8 53 aa10.49□□□□□ -0.73
VPS29-206ENST00000549578 M0R2T5 61 aa10.48□□□□□ -0.73
VPS29-206ENST00000549578 KLKP1Q107X0 134 aa10.46□□□□□ -0.74
VPS29-206ENST00000549578 H1FX-AS1Q4G0G2 97 aa10.44□□□□□ -0.74
VPS29-206ENST00000549578 KRTAP3-1Q9BYR8 98 aa10.43□□□□□ -0.74
VPS29-206ENST00000549578 SERP2Q8N6R1 65 aa10.41□□□□□ -0.74
VPS29-206ENST00000549578 KRTAP10-6P60371 365 aaPredicted RBP10.33□□□□□ -0.76
VPS29-206ENST00000549578 SNURFQ9Y675 71 aa10.32□□□□□ -0.76
VPS29-206ENST00000549578 LORP23490 312 aaPredicted RBP10.31□□□□□ -0.76
VPS29-206ENST00000549578 C20orf197Q8N268 126 aa10.3□□□□□ -0.76
VPS29-206ENST00000549578 COX7CP15954 63 aa10.25□□□□□ -0.77
VPS29-206ENST00000549578 S4R3F8 94 aa10.23□□□□□ -0.77
VPS29-206ENST00000549578 A8MUN3 132 aa10.21□□□□□ -0.78
VPS29-206ENST00000549578 ANAPC13Q9BS18 74 aa10.21□□□□□ -0.78
VPS29-206ENST00000549578 LCA10Q71F78 164 aa10.19□□□□□ -0.78
VPS29-206ENST00000549578 DMAC1Q96GE9 116 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms