RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SPTBN5Q9NRC6 3674 aaKnown RBP0.14□□□□□ -2.39
VPS29-205ENST00000548539 KMT2AQ03164 3969 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 C5orf42Q9H799 3197 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 NBPF19A0A087WUL8 3843 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 A8MTW9 85 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 NDUFA1O15239 70 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 PRM1P04553 51 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 RPL39P62891 51 aaKnown RBP0.14□□□□□ -2.39
VPS29-205ENST00000548539 PRLHP81277 87 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 WT1-ASQ06250 92 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 PIGYQ3MUY2 71 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 MINOS1Q5TGZ0 78 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 Q5VSD8 79 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 RPL39LQ96EH5 51 aaKnown RBP0.14□□□□□ -2.39
VPS29-205ENST00000548539 SMIM2Q9BVW6 85 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 TTTY10Q9BZA0 68 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 C6orf48Q9UBA6 75 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 HSPG2P98160 4391 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 CCDC168Q8NDH2 2452 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 SETD2Q9BYW2 2564 aaPredicted RBP0.14□□□□□ -2.39
VPS29-205ENST00000548539 STAB1Q9NY15 2570 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 MROH2BQ7Z745 1585 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 SAMD9LQ8IVG5 1584 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 DUOX1Q9NRD9 1551 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 KALRNO60229 2985 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 NF1P21359 2839 aa0.14□□□□□ -2.39
VPS29-205ENST00000548539 MACF1Q9UPN3 7388 aaKnown RBP0.13□□□□□ -2.39
VPS29-205ENST00000548539 RIF1Q5UIP0 2472 aaKnown RBP0.13□□□□□ -2.39
VPS29-205ENST00000548539 DNAH8Q96JB1 4490 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 HRNRQ86YZ3 2850 aaPredicted RBP0.13□□□□□ -2.39
VPS29-205ENST00000548539 SPENQ96T58 3664 aaKnown RBP0.13□□□□□ -2.39
VPS29-205ENST00000548539 SPG11Q96JI7 2443 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 TACC2O95359 2948 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 MMP24-AS1A0A0U1RRL7 71 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 H3BSH0 61 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 POLR2KP53803 58 aaKnown RBP0.13□□□□□ -2.39
VPS29-205ENST00000548539 RPL38P63173 70 aaKnown RBP0.13□□□□□ -2.39
VPS29-205ENST00000548539 CLPSL2Q6UWE3 100 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 USMG5Q96IX5 58 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 U3KQA8 63 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 ADGRG4Q8IZF6 3080 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 CFAP54Q96N23 3096 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 CUBNO60494 3623 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 ZANQ9Y493 2812 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 FLNCQ14315 2725 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 ACANP16112 2415 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 ATP7AQ04656 1500 aa0.13□□□□□ -2.39
VPS29-205ENST00000548539 CRYBG3Q68DQ2 2970 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 DNAH2Q9P225 4427 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 VPS13BQ7Z7G8 4022 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 HMCN2Q8NDA2 5059 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 ZFHX4Q86UP3 3567 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 PKD1P98161 4303 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 ATMQ13315 3056 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 MRPL33O75394 65 aaKnown RBP0.12□□□□□ -2.39
VPS29-205ENST00000548539 ARHGAP5-AS1Q96IT6 56 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 TMEM167BQ9NRX6 74 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 FAT1Q14517 4588 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 FAT3Q8TDW7 4589 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 SPTBN4Q9H254 2564 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 DNAH12Q6ZR08 3092 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 HECTD4Q9Y4D8 3996 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 CELSR3Q9NYQ7 3312 aa0.12□□□□□ -2.39
VPS29-205ENST00000548539 DYNC2H1Q8NCM8 4307 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 ANKRD11Q6UB99 2663 aaPredicted RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 SETXQ7Z333 2677 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 GCN1Q92616 2671 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 SVEP1Q4LDE5 3571 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 MYO18BQ8IUG5 2567 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 FAM186AA6NE01 2351 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 UNC79Q9P2D8 2635 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 APOBP04114 4563 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 LRRK2Q5S007 2527 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 ZFYVE26Q68DK2 2539 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 ANK3Q12955 4377 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 RANBP2P49792 3224 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 SONP18583 2426 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 RELNP78509 3460 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 IGLV5-48A0A075B6I7 105 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 DEFB109BQ30KR1 87 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 DEFB106AQ8N104 65 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 NSD1Q96L73 2696 aaPredicted RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 LRP1BQ9NZR2 4599 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 DNAH9Q9NYC9 4486 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 GCC2Q8IWJ2 1684 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 FASNP49327 2511 aaKnown RBP0.11□□□□□ -2.39
VPS29-205ENST00000548539 PKHD1L1Q86WI1 4243 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 DMXL2Q8TDJ6 3036 aa0.11□□□□□ -2.39
VPS29-205ENST00000548539 HUWE1Q7Z6Z7 4374 aaKnown RBP0.1□□□□□ -2.39
VPS29-205ENST00000548539 DNAH7Q8WXX0 4024 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 COL6A3P12111 3177 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 CLTCL1P53675 1640 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 DNAH3Q8TD57 4116 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 TEP1Q99973 2627 aaKnown RBP0.1□□□□□ -2.39
VPS29-205ENST00000548539 ITPR1Q14643 2758 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 ANKHD1Q8IWZ3 2542 aaKnown RBP0.1□□□□□ -2.39
VPS29-205ENST00000548539 NCOR2Q9Y618 2525 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 NBEAQ8NFP9 2946 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 LINC01590Q5TEZ4 76 aa0.1□□□□□ -2.39
VPS29-205ENST00000548539 SRCAPQ6ZRS2 3230 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms