RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 OCR1Q9BZK8 76 aa7.78□□□□□ -1.16
PTCH1-215ENST00000547672 HERC2O95714 4834 aa7.77□□□□□ -1.17
PTCH1-215ENST00000547672 C5orf47Q569G3 176 aa7.77□□□□□ -1.17
PTCH1-215ENST00000547672 Q5VSD8 79 aa7.77□□□□□ -1.17
PTCH1-215ENST00000547672 WFDC13Q8IUB5 93 aa7.77□□□□□ -1.17
PTCH1-215ENST00000547672 C8orf17Q9NRJ1 99 aa7.77□□□□□ -1.17
PTCH1-215ENST00000547672 IGHV6-1A0A0B4J1U7 121 aa7.76□□□□□ -1.17
PTCH1-215ENST00000547672 KRTAP29-1A8MX34 341 aaPredicted RBP7.76□□□□□ -1.17
PTCH1-215ENST00000547672 LCE2BO14633 110 aa7.76□□□□□ -1.17
PTCH1-215ENST00000547672 TP53AIP1Q9HCN2 124 aa7.76□□□□□ -1.17
PTCH1-215ENST00000547672 PKHD1P08F94 4074 aa7.76□□□□□ -1.17
PTCH1-215ENST00000547672 C1orf195Q5TG92 126 aa7.75□□□□□ -1.17
PTCH1-215ENST00000547672 MMP24-AS1A0A0U1RRL7 71 aa7.74□□□□□ -1.17
PTCH1-215ENST00000547672 NDUFC1O43677 76 aa7.74□□□□□ -1.17
PTCH1-215ENST00000547672 TMEM254Q8TBM7 123 aa7.73□□□□□ -1.17
PTCH1-215ENST00000547672 MP68P56378 58 aa7.72□□□□□ -1.17
PTCH1-215ENST00000547672 VPS13BQ7Z7G8 4022 aa7.72□□□□□ -1.17
PTCH1-215ENST00000547672 H3BPC8 53 aa7.71□□□□□ -1.18
PTCH1-215ENST00000547672 LINC00313P59037 77 aa7.71□□□□□ -1.18
PTCH1-215ENST00000547672 Q8N1X5 172 aa7.71□□□□□ -1.18
PTCH1-215ENST00000547672 C20orf197Q8N268 126 aa7.71□□□□□ -1.18
PTCH1-215ENST00000547672 KLKP1Q107X0 134 aa7.7□□□□□ -1.18
PTCH1-215ENST00000547672 MRPL34Q9BQ48 92 aaKnown RBP7.7□□□□□ -1.18
PTCH1-215ENST00000547672 KIAA1109Q2LD37 5005 aa7.68□□□□□ -1.18
PTCH1-215ENST00000547672 APOBP04114 4563 aaKnown RBP7.67□□□□□ -1.18
PTCH1-215ENST00000547672 NDUFS5O43920 106 aa7.65□□□□□ -1.18
PTCH1-215ENST00000547672 KRTAP10-8P60410 259 aa7.64□□□□□ -1.19
PTCH1-215ENST00000547672 TMEM258P61165 79 aa7.64□□□□□ -1.19
PTCH1-215ENST00000547672 A0A0U1RQV1 116 aa7.63□□□□□ -1.19
PTCH1-215ENST00000547672 TRAV22A0A0B4J277 110 aa7.61□□□□□ -1.19
PTCH1-215ENST00000547672 H0Y9P7 68 aa7.6□□□□□ -1.19
PTCH1-215ENST00000547672 SNURFQ9Y675 71 aa7.6□□□□□ -1.19
PTCH1-215ENST00000547672 RYR1P21817 5038 aa7.6□□□□□ -1.19
PTCH1-215ENST00000547672 OXTP01178 125 aa7.58□□□□□ -1.2
PTCH1-215ENST00000547672 ATP5EP56381 51 aaPredicted RBP7.58□□□□□ -1.2
PTCH1-215ENST00000547672 NOTCH2NLQ7Z3S9 236 aa7.58□□□□□ -1.2
PTCH1-215ENST00000547672 Q8N9P0 234 aaPredicted RBP7.57□□□□□ -1.2
PTCH1-215ENST00000547672 LINC00208Q96KT6 92 aa7.57□□□□□ -1.2
PTCH1-215ENST00000547672 C1orf64Q8NEQ6 169 aa7.56□□□□□ -1.2
PTCH1-215ENST00000547672 H7BZZ5 65 aa7.55□□□□□ -1.2
PTCH1-215ENST00000547672 FP248Q71RG6 208 aaPredicted RBP7.55□□□□□ -1.2
PTCH1-215ENST00000547672 ABCA13Q86UQ4 5058 aa7.55□□□□□ -1.2
PTCH1-215ENST00000547672 ZCCHC13Q8WW36 166 aaKnown RBP7.54□□□□□ -1.2
PTCH1-215ENST00000547672 FAT1Q14517 4588 aa7.52□□□□□ -1.21
PTCH1-215ENST00000547672 PKHD1L1Q86WI1 4243 aa7.51□□□□□ -1.21
PTCH1-215ENST00000547672 LOC101927531A0A1B0GV80 90 aa7.51□□□□□ -1.21
PTCH1-215ENST00000547672 FAM236DA0A1B0GTK5 79 aa7.5□□□□□ -1.21
PTCH1-215ENST00000547672 KRTAP16-1A8MUX0 517 aa7.5□□□□□ -1.21
PTCH1-215ENST00000547672 FAM236CP0DP71 79 aa7.5□□□□□ -1.21
PTCH1-215ENST00000547672 CYSTM1Q9H1C7 97 aa7.49□□□□□ -1.21
PTCH1-215ENST00000547672 RPS28P62857 69 aaKnown RBP7.47□□□□□ -1.21
PTCH1-215ENST00000547672 HSPG2P98160 4391 aa7.47□□□□□ -1.21
PTCH1-215ENST00000547672 SPANXA2-OT1Q8N9U9 137 aa7.46□□□□□ -1.22
PTCH1-215ENST00000547672 KRTAP4-5Q9BYR2 181 aa7.43□□□□□ -1.22
PTCH1-215ENST00000547672 MT1HL1P0DM35 61 aa7.42□□□□□ -1.22
PTCH1-215ENST00000547672 C20orf166-AS1Q96NR2 134 aa7.42□□□□□ -1.22
PTCH1-215ENST00000547672 KRTAP13-3Q3SY46 172 aa7.41□□□□□ -1.22
PTCH1-215ENST00000547672 Q5W150 140 aa7.41□□□□□ -1.22
PTCH1-215ENST00000547672 RETNLBQ9BQ08 111 aa7.41□□□□□ -1.22
PTCH1-215ENST00000547672 SERP1Q9Y6X1 66 aa7.41□□□□□ -1.22
PTCH1-215ENST00000547672 IGLV7-46A0A075B6I9 117 aa7.4□□□□□ -1.22
PTCH1-215ENST00000547672 A8MUU9 505 aa7.4□□□□□ -1.22
PTCH1-215ENST00000547672 FLG2Q5D862 2391 aaPredicted RBP7.4□□□□□ -1.23
PTCH1-215ENST00000547672 C9orf92A6NGG3 77 aa7.39□□□□□ -1.23
PTCH1-215ENST00000547672 CYP4F30PQ9H0H9 118 aa7.39□□□□□ -1.23
PTCH1-215ENST00000547672 Q75L30 129 aa7.37□□□□□ -1.23
PTCH1-215ENST00000547672 IGKV2-30P06310 120 aa7.36□□□□□ -1.23
PTCH1-215ENST00000547672 LCE2AQ5TA79 106 aaPredicted RBP7.34□□□□□ -1.23
PTCH1-215ENST00000547672 PCOTHQ58A44 107 aa7.33□□□□□ -1.24
PTCH1-215ENST00000547672 ATP11AUNQ6ZP68 121 aa7.32□□□□□ -1.24
PTCH1-215ENST00000547672 PRR4Q16378 134 aa7.31□□□□□ -1.24
PTCH1-215ENST00000547672 LCE2CQ5TA81 110 aa7.31□□□□□ -1.24
PTCH1-215ENST00000547672 C7orf65Q6ZTY9 151 aa7.31□□□□□ -1.24
PTCH1-215ENST00000547672 DMBT1Q9UGM3 2413 aaPredicted RBP7.31□□□□□ -1.24
PTCH1-215ENST00000547672 IGKV2D-30A0A075B6S6 120 aa7.28□□□□□ -1.24
PTCH1-215ENST00000547672 TPRXLQ17RH7 258 aa7.26□□□□□ -1.25
PTCH1-215ENST00000547672 SMIM26A0A096LP01 95 aa7.25□□□□□ -1.25
PTCH1-215ENST00000547672 ACYP2P14621 99 aa7.25□□□□□ -1.25
PTCH1-215ENST00000547672 FAT3Q8TDW7 4589 aa7.25□□□□□ -1.25
PTCH1-215ENST00000547672 TNXBP22105 4242 aa7.25□□□□□ -1.25
PTCH1-215ENST00000547672 HERC1Q15751 4861 aa7.24□□□□□ -1.25
PTCH1-215ENST00000547672 HRES1P13985 223 aa7.24□□□□□ -1.25
PTCH1-215ENST00000547672 RPL37P61927 97 aaKnown RBP7.24□□□□□ -1.25
PTCH1-215ENST00000547672 LRP1Q07954 4544 aaKnown RBP7.22□□□□□ -1.25
PTCH1-215ENST00000547672 XP32Q5T750 250 aa7.21□□□□□ -1.26
PTCH1-215ENST00000547672 A8MUN3 132 aa7.2□□□□□ -1.26
PTCH1-215ENST00000547672 SPINK7P58062 85 aa7.18□□□□□ -1.26
PTCH1-215ENST00000547672 DMAC1Q96GE9 116 aa7.18□□□□□ -1.26
PTCH1-215ENST00000547672 LORP23490 312 aaPredicted RBP7.15□□□□□ -1.26
PTCH1-215ENST00000547672 COA5Q86WW8 74 aa7.15□□□□□ -1.26
PTCH1-215ENST00000547672 V9GYY9 64 aa7.15□□□□□ -1.26
PTCH1-215ENST00000547672 CHKB-CPT1BH3BT56 60 aa7.12□□□□□ -1.27
PTCH1-215ENST00000547672 MYCBP2O75592 4640 aa7.09□□□□□ -1.27
PTCH1-215ENST00000547672 SEC61BP60468 96 aaKnown RBP7.08□□□□□ -1.28
PTCH1-215ENST00000547672 SPTSSBQ8NFR3 76 aa7.07□□□□□ -1.28
PTCH1-215ENST00000547672 C4orf26Q17RF5 130 aa7.06□□□□□ -1.28
PTCH1-215ENST00000547672 Q1T7F1 81 aa7.06□□□□□ -1.28
PTCH1-215ENST00000547672 COX6B2Q6YFQ2 88 aa7.04□□□□□ -1.28
PTCH1-215ENST00000547672 MPLKIPQ8TAP9 179 aa7□□□□□ -1.29
PTCH1-215ENST00000547672 UBR4Q5T4S7 5183 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms