RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 BRK1Q8WUW1 75 aa6.51□□□□□ -1.37
CUX1-212ENST00000547394 V9GYY9 64 aa6.51□□□□□ -1.37
CUX1-212ENST00000547394 MMP24-AS1A0A0U1RRL7 71 aa6.51□□□□□ -1.37
CUX1-212ENST00000547394 KRTAP13-2Q52LG2 175 aa6.51□□□□□ -1.37
CUX1-212ENST00000547394 NDUFB1O75438 58 aa6.49□□□□□ -1.37
CUX1-212ENST00000547394 LINC00208Q96KT6 92 aa6.49□□□□□ -1.37
CUX1-212ENST00000547394 hDV103S1A0JD37 113 aa6.48□□□□□ -1.37
CUX1-212ENST00000547394 NDUFS5O43920 106 aa6.48□□□□□ -1.37
CUX1-212ENST00000547394 LCE6AA0A183 80 aa6.47□□□□□ -1.37
CUX1-212ENST00000547394 CDK2AP2O75956 126 aa6.46□□□□□ -1.38
CUX1-212ENST00000547394 APOBP04114 4563 aaKnown RBP6.46□□□□□ -1.38
CUX1-212ENST00000547394 C8orf17Q9NRJ1 99 aa6.46□□□□□ -1.38
CUX1-212ENST00000547394 H0Y9P7 68 aa6.45□□□□□ -1.38
CUX1-212ENST00000547394 C1orf64Q8NEQ6 169 aa6.45□□□□□ -1.38
CUX1-212ENST00000547394 A0A1B0GVX0 72 aa6.45□□□□□ -1.38
CUX1-212ENST00000547394 KRTAP1-4P0C5Y4 121 aa6.45□□□□□ -1.38
CUX1-212ENST00000547394 ZCCHC13Q8WW36 166 aaKnown RBP6.45□□□□□ -1.38
CUX1-212ENST00000547394 PLA2G1BP04054 148 aaKnown RBP6.43□□□□□ -1.38
CUX1-212ENST00000547394 RYR3Q15413 4870 aa6.43□□□□□ -1.38
CUX1-212ENST00000547394 MP68P56378 58 aa6.42□□□□□ -1.38
CUX1-212ENST00000547394 RETNLBQ9BQ08 111 aa6.41□□□□□ -1.38
CUX1-212ENST00000547394 C1orf195Q5TG92 126 aa6.4□□□□□ -1.38
CUX1-212ENST00000547394 PCOTHQ58A44 107 aa6.4□□□□□ -1.38
CUX1-212ENST00000547394 PRR26Q8N8Z3 221 aa6.4□□□□□ -1.38
CUX1-212ENST00000547394 SSBP3-AS1Q7Z2R9 100 aa6.39□□□□□ -1.39
CUX1-212ENST00000547394 PSPHP1O15172 72 aa6.38□□□□□ -1.39
CUX1-212ENST00000547394 TRAV22A0A0B4J277 110 aa6.37□□□□□ -1.39
CUX1-212ENST00000547394 A0A1B0GVY2 172 aa6.37□□□□□ -1.39
CUX1-212ENST00000547394 TYMSOSQ8TAI1 123 aa6.37□□□□□ -1.39
CUX1-212ENST00000547394 MRPL34Q9BQ48 92 aaKnown RBP6.36□□□□□ -1.39
CUX1-212ENST00000547394 FLG2Q5D862 2391 aaPredicted RBP6.35□□□□□ -1.39
CUX1-212ENST00000547394 ASB16-AS1Q495Z4 193 aa6.35□□□□□ -1.39
CUX1-212ENST00000547394 Q5W150 140 aa6.35□□□□□ -1.39
CUX1-212ENST00000547394 CYP4F30PQ9H0H9 118 aa6.35□□□□□ -1.39
CUX1-212ENST00000547394 LRP1Q07954 4544 aaKnown RBP6.35□□□□□ -1.39
CUX1-212ENST00000547394 Q1T7F1 81 aa6.35□□□□□ -1.39
CUX1-212ENST00000547394 CD164Q04900 197 aa6.33□□□□□ -1.4
CUX1-212ENST00000547394 A8MUN3 132 aa6.3□□□□□ -1.4
CUX1-212ENST00000547394 LINC00313P59037 77 aa6.3□□□□□ -1.4
CUX1-212ENST00000547394 PKHD1L1Q86WI1 4243 aa6.28□□□□□ -1.4
CUX1-212ENST00000547394 HSPG2P98160 4391 aa6.27□□□□□ -1.41
CUX1-212ENST00000547394 TP53AIP1Q9HCN2 124 aa6.27□□□□□ -1.41
CUX1-212ENST00000547394 KRTAP10-4P60372 401 aaPredicted RBP6.27□□□□□ -1.41
CUX1-212ENST00000547394 KIAA1109Q2LD37 5005 aa6.26□□□□□ -1.41
CUX1-212ENST00000547394 DMBT1Q9UGM3 2413 aaPredicted RBP6.26□□□□□ -1.41
CUX1-212ENST00000547394 LINC00304Q8N9R0 145 aa6.26□□□□□ -1.41
CUX1-212ENST00000547394 A8MU10 97 aa6.26□□□□□ -1.41
CUX1-212ENST00000547394 MYCBP2O75592 4640 aa6.25□□□□□ -1.41
CUX1-212ENST00000547394 Q8N9P0 234 aaPredicted RBP6.25□□□□□ -1.41
CUX1-212ENST00000547394 SPANXA2-OT1Q8N9U9 137 aa6.24□□□□□ -1.41
CUX1-212ENST00000547394 LIMD2Q9BT23 127 aa6.24□□□□□ -1.41
CUX1-212ENST00000547394 H3BPC8 53 aa6.24□□□□□ -1.41
CUX1-212ENST00000547394 Q5VV11 94 aa6.23□□□□□ -1.41
CUX1-212ENST00000547394 C9orf92A6NGG3 77 aa6.22□□□□□ -1.41
CUX1-212ENST00000547394 H3BS24 57 aa6.22□□□□□ -1.41
CUX1-212ENST00000547394 SPINK1P00995 79 aa6.22□□□□□ -1.41
CUX1-212ENST00000547394 EPPK1P58107 5090 aaKnown RBP6.21□□□□□ -1.41
CUX1-212ENST00000547394 PMAIP1Q13794 54 aa6.21□□□□□ -1.41
CUX1-212ENST00000547394 KRTAP16-1A8MUX0 517 aa6.21□□□□□ -1.42
CUX1-212ENST00000547394 KRTAP13-3Q3SY46 172 aa6.21□□□□□ -1.42
CUX1-212ENST00000547394 C8orf87E5RJ46 101 aa6.2□□□□□ -1.42
CUX1-212ENST00000547394 PRR15LQ9BU68 103 aa6.2□□□□□ -1.42
CUX1-212ENST00000547394 KRTAP17-1Q9BYP8 105 aa6.2□□□□□ -1.42
CUX1-212ENST00000547394 CHKB-CPT1BH3BT56 60 aa6.2□□□□□ -1.42
CUX1-212ENST00000547394 COA5Q86WW8 74 aa6.19□□□□□ -1.42
CUX1-212ENST00000547394 IGKV2D-30A0A075B6S6 120 aa6.18□□□□□ -1.42
CUX1-212ENST00000547394 IGKV2-30P06310 120 aa6.18□□□□□ -1.42
CUX1-212ENST00000547394 RYR1P21817 5038 aa6.18□□□□□ -1.42
CUX1-212ENST00000547394 IGLV7-46A0A075B6I9 117 aa6.17□□□□□ -1.42
CUX1-212ENST00000547394 TNXBP22105 4242 aa6.15□□□□□ -1.42
CUX1-212ENST00000547394 LOC101927531A0A1B0GV80 90 aa6.14□□□□□ -1.43
CUX1-212ENST00000547394 Q5VSD8 79 aa6.14□□□□□ -1.43
CUX1-212ENST00000547394 HRES1P13985 223 aa6.13□□□□□ -1.43
CUX1-212ENST00000547394 FAM229AH3BQW9 127 aa6.13□□□□□ -1.43
CUX1-212ENST00000547394 SPTSSBQ8NFR3 76 aa6.12□□□□□ -1.43
CUX1-212ENST00000547394 A6NED7 52 aa6.12□□□□□ -1.43
CUX1-212ENST00000547394 Q8N1X5 172 aa6.12□□□□□ -1.43
CUX1-212ENST00000547394 SPAG11AQ6PDA7 123 aa6.12□□□□□ -1.43
CUX1-212ENST00000547394 LCA10Q71F78 164 aa6.1□□□□□ -1.43
CUX1-212ENST00000547394 FAT3Q8TDW7 4589 aa6.1□□□□□ -1.43
CUX1-212ENST00000547394 Q75L30 129 aa6.09□□□□□ -1.43
CUX1-212ENST00000547394 LINC01558Q9Y6Z2 57 aa6.04□□□□□ -1.44
CUX1-212ENST00000547394 RPS29P62273 56 aaKnown RBP6.03□□□□□ -1.44
CUX1-212ENST00000547394 ATP11AUNQ6ZP68 121 aa6.02□□□□□ -1.45
CUX1-212ENST00000547394 SPINK7P58062 85 aa6.01□□□□□ -1.45
CUX1-212ENST00000547394 CDC42SE1Q9NRR8 79 aa6□□□□□ -1.45
CUX1-212ENST00000547394 RBM12B-AS1Q9P1G2 102 aa6□□□□□ -1.45
CUX1-212ENST00000547394 C7orf65Q6ZTY9 151 aa6□□□□□ -1.45
CUX1-212ENST00000547394 KRTAP10-8P60410 259 aa5.99□□□□□ -1.45
CUX1-212ENST00000547394 KTN1-AS1Q86SY8 53 aa5.99□□□□□ -1.45
CUX1-212ENST00000547394 DMAC1Q96GE9 116 aa5.99□□□□□ -1.45
CUX1-212ENST00000547394 ACYP2P14621 99 aa5.98□□□□□ -1.45
CUX1-212ENST00000547394 ABCA13Q86UQ4 5058 aa5.98□□□□□ -1.45
CUX1-212ENST00000547394 A6NN06 94 aa5.96□□□□□ -1.45
CUX1-212ENST00000547394 KRTAP4-5Q9BYR2 181 aa5.96□□□□□ -1.46
CUX1-212ENST00000547394 A8MUU9 505 aa5.95□□□□□ -1.46
CUX1-212ENST00000547394 LPAP08519 4548 aa5.95□□□□□ -1.46
CUX1-212ENST00000547394 C20orf166-AS1Q96NR2 134 aa5.95□□□□□ -1.46
CUX1-212ENST00000547394 A0A0A0MQY5 61 aa5.94□□□□□ -1.46
CUX1-212ENST00000547394 LRP2P98164 4655 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms