RNA–Protein interactions for RNA: ENST00000545266.1

COPA-206, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-206ENST00000545266 NOP10Q9NPE3 64 aaKnown RBP0.29□□□□□ -2.36
COPA-206ENST00000545266 HMCN2Q8NDA2 5059 aa0.28□□□□□ -2.36
COPA-206ENST00000545266 CREBBPQ92793 2442 aa0.28□□□□□ -2.36
COPA-206ENST00000545266 HECTD1Q9ULT8 2610 aa0.28□□□□□ -2.37
COPA-206ENST00000545266 TRPM2O94759 1503 aa0.28□□□□□ -2.37
COPA-206ENST00000545266 WNK1Q9H4A3 2382 aa0.27□□□□□ -2.37
COPA-206ENST00000545266 LPAP08519 4548 aa0.27□□□□□ -2.37
COPA-206ENST00000545266 MMP24-AS1A0A0U1RRL7 71 aa0.27□□□□□ -2.37
COPA-206ENST00000545266 SAMD9LQ8IVG5 1584 aa0.27□□□□□ -2.37
COPA-206ENST00000545266 APC2O95996 2303 aa0.26□□□□□ -2.37
COPA-206ENST00000545266 KMT2DO14686 5537 aa0.26□□□□□ -2.37
COPA-206ENST00000545266 C9orf92A6NGG3 77 aa0.26□□□□□ -2.37
COPA-206ENST00000545266 LYSTQ99698 3801 aa0.26□□□□□ -2.37
COPA-206ENST00000545266 NSD1Q96L73 2696 aaPredicted RBP0.25□□□□□ -2.37
COPA-206ENST00000545266 IGSF10Q6WRI0 2623 aa0.25□□□□□ -2.37
COPA-206ENST00000545266 NDUFA1O15239 70 aa0.25□□□□□ -2.37
COPA-206ENST00000545266 MAP1BP46821 2468 aaKnown RBP0.25□□□□□ -2.37
COPA-206ENST00000545266 M0QY20 66 aa0.24□□□□□ -2.37
COPA-206ENST00000545266 KRTAP6-2Q3LI66 62 aa0.24□□□□□ -2.37
COPA-206ENST00000545266 SETXQ7Z333 2677 aaKnown RBP0.24□□□□□ -2.37
COPA-206ENST00000545266 SPTBN4Q9H254 2564 aa0.23□□□□□ -2.37
COPA-206ENST00000545266 PKD1L2Q7Z442 2459 aa0.23□□□□□ -2.37
COPA-206ENST00000545266 PDZD2O15018 2839 aa0.22□□□□□ -2.37
COPA-206ENST00000545266 FLNBO75369 2602 aaKnown RBP0.21□□□□□ -2.38
COPA-206ENST00000545266 SPRR2AP35326 72 aa0.21□□□□□ -2.38
COPA-206ENST00000545266 DEFB131AP59861 70 aa0.21□□□□□ -2.38
COPA-206ENST00000545266 VPS13BQ7Z7G8 4022 aa0.21□□□□□ -2.38
COPA-206ENST00000545266 STAB1Q9NY15 2570 aa0.21□□□□□ -2.38
COPA-206ENST00000545266 HSPG2P98160 4391 aa0.2□□□□□ -2.38
COPA-206ENST00000545266 PKD1P98161 4303 aa0.2□□□□□ -2.38
COPA-206ENST00000545266 DEFB110Q30KQ9 67 aa0.19□□□□□ -2.38
COPA-206ENST00000545266 COL7A1Q02388 2944 aa0.19□□□□□ -2.38
COPA-206ENST00000545266 LRP1BQ9NZR2 4599 aa0.18□□□□□ -2.38
COPA-206ENST00000545266 GCN1Q92616 2671 aaKnown RBP0.18□□□□□ -2.38
COPA-206ENST00000545266 HECTD4Q9Y4D8 3996 aa0.18□□□□□ -2.38
COPA-206ENST00000545266 A0A0C4DFX4 3053 aa0.17□□□□□ -2.38
COPA-206ENST00000545266 DCHS2Q6V1P9 2916 aa0.17□□□□□ -2.38
COPA-206ENST00000545266 DMBT1Q9UGM3 2413 aaPredicted RBP0.16□□□□□ -2.38
COPA-206ENST00000545266 COL6A3P12111 3177 aa0.16□□□□□ -2.38
COPA-206ENST00000545266 TNP1P09430 55 aa0.16□□□□□ -2.38
COPA-206ENST00000545266 NF1P21359 2839 aa0.16□□□□□ -2.38
COPA-206ENST00000545266 SONP18583 2426 aaKnown RBP0.16□□□□□ -2.38
COPA-206ENST00000545266 SACSQ9NZJ4 4579 aa0.15□□□□□ -2.38
COPA-206ENST00000545266 A8MTW9 85 aa0.15□□□□□ -2.39
COPA-206ENST00000545266 ZZEF1O43149 2961 aa0.15□□□□□ -2.39
COPA-206ENST00000545266 SPRR2EP22531 72 aa0.15□□□□□ -2.39
COPA-206ENST00000545266 DUOX1Q9NRD9 1551 aa0.15□□□□□ -2.39
COPA-206ENST00000545266 FLNCQ14315 2725 aa0.15□□□□□ -2.39
COPA-206ENST00000545266 SETD2Q9BYW2 2564 aaPredicted RBP0.14□□□□□ -2.39
COPA-206ENST00000545266 MROH2BQ7Z745 1585 aa0.14□□□□□ -2.39
COPA-206ENST00000545266 GPR98Q8WXG9 6306 aa0.14□□□□□ -2.39
COPA-206ENST00000545266 PKHD1P08F94 4074 aa0.13□□□□□ -2.39
COPA-206ENST00000545266 CUBNO60494 3623 aa0.13□□□□□ -2.39
COPA-206ENST00000545266 PKHD1L1Q86WI1 4243 aa0.13□□□□□ -2.39
COPA-206ENST00000545266 DMXL1Q9Y485 3027 aa0.13□□□□□ -2.39
COPA-206ENST00000545266 M0QZ58 72 aa0.13□□□□□ -2.39
COPA-206ENST00000545266 POLR2KP53803 58 aaKnown RBP0.13□□□□□ -2.39
COPA-206ENST00000545266 SVEP1Q4LDE5 3571 aa0.12□□□□□ -2.39
COPA-206ENST00000545266 GCC2Q8IWJ2 1684 aa0.12□□□□□ -2.39
COPA-206ENST00000545266 MT1AP04731 61 aa0.12□□□□□ -2.39
COPA-206ENST00000545266 ANK3Q12955 4377 aaKnown RBP0.12□□□□□ -2.39
COPA-206ENST00000545266 SRRM2Q9UQ35 2752 aaKnown RBP0.11□□□□□ -2.39
COPA-206ENST00000545266 SPRR2GQ9BYE4 73 aa0.11□□□□□ -2.39
COPA-206ENST00000545266 ZANQ9Y493 2812 aa0.11□□□□□ -2.39
COPA-206ENST00000545266 LRP2P98164 4655 aa0.11□□□□□ -2.39
COPA-206ENST00000545266 MTORP42345 2549 aa0.1□□□□□ -2.39
COPA-206ENST00000545266 SPRR2FQ96RM1 72 aa0.1□□□□□ -2.39
COPA-206ENST00000545266 FLGP20930 4061 aaPredicted RBP0.1□□□□□ -2.39
COPA-206ENST00000545266 TACC2O95359 2948 aa0.1□□□□□ -2.39
COPA-206ENST00000545266 DNAH3Q8TD57 4116 aa0.1□□□□□ -2.39
COPA-206ENST00000545266 MACF1Q9UPN3 7388 aaKnown RBP0.1□□□□□ -2.39
COPA-206ENST00000545266 CLPSL2Q6UWE3 100 aa0.09□□□□□ -2.4
COPA-206ENST00000545266 ACACAQ13085 2346 aa0.09□□□□□ -2.4
COPA-206ENST00000545266 COL6A5A8TX70 2615 aa0.08□□□□□ -2.4
COPA-206ENST00000545266 ANKHD1Q8IWZ3 2542 aaKnown RBP0.08□□□□□ -2.4
COPA-206ENST00000545266 DNAH11Q96DT5 4516 aa0.08□□□□□ -2.4
COPA-206ENST00000545266 TENM2Q9NT68 2774 aa0.08□□□□□ -2.4
COPA-206ENST00000545266 SYNE2Q8WXH0 6885 aaKnown RBP0.08□□□□□ -2.4
COPA-206ENST00000545266 SPG11Q96JI7 2443 aa0.06□□□□□ -2.4
COPA-206ENST00000545266 ANKRD11Q6UB99 2663 aaPredicted RBP0.06□□□□□ -2.4
COPA-206ENST00000545266 ACACBO00763 2458 aa0.06□□□□□ -2.4
COPA-206ENST00000545266 RANBP2P49792 3224 aaKnown RBP0.06□□□□□ -2.4
COPA-206ENST00000545266 MAP1AP78559 2803 aaPredicted RBP0.06□□□□□ -2.4
COPA-206ENST00000545266 FAT3Q8TDW7 4589 aa0.06□□□□□ -2.4
COPA-206ENST00000545266 FLNAP21333 2647 aaKnown RBP0.05□□□□□ -2.4
COPA-206ENST00000545266 DNAH2Q9P225 4427 aa0.05□□□□□ -2.4
COPA-206ENST00000545266 TGP01266 2768 aa0.05□□□□□ -2.4
COPA-206ENST00000545266 LRRK2Q5S007 2527 aa0.05□□□□□ -2.4
COPA-206ENST00000545266 FSIP2Q5CZC0 6907 aa0.05□□□□□ -2.4
COPA-206ENST00000545266 TEP1Q99973 2627 aaKnown RBP0.04□□□□□ -2.4
COPA-206ENST00000545266 DNAH9Q9NYC9 4486 aa0.04□□□□□ -2.4
COPA-206ENST00000545266 APOBP04114 4563 aaKnown RBP0.04□□□□□ -2.4
COPA-206ENST00000545266 COL12A1Q99715 3063 aa0.03□□□□□ -2.4
COPA-206ENST00000545266 FAT1Q14517 4588 aa0.03□□□□□ -2.4
COPA-206ENST00000545266 RPL39P62891 51 aaKnown RBP0.03□□□□□ -2.4
COPA-206ENST00000545266 KRTAP19-5Q3LI72 72 aa0.03□□□□□ -2.4
COPA-206ENST00000545266 KRTAP8-1Q8IUC2 63 aa0.03□□□□□ -2.4
COPA-206ENST00000545266 DYNC2H1Q8NCM8 4307 aaKnown RBP0.03□□□□□ -2.4
COPA-206ENST00000545266 VPS13DQ5THJ4 4388 aa0.03□□□□□ -2.4
COPA-206ENST00000545266 FAM186AA6NE01 2351 aa0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms