RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 DSCR10P59022 87 aa8.29□□□□□ -1.08
CCDC78-216ENST00000544996 C20orf166-AS1Q96NR2 134 aa8.29□□□□□ -1.08
CCDC78-216ENST00000544996 LINC00313P59037 77 aa8.28□□□□□ -1.08
CCDC78-216ENST00000544996 DEFB116Q30KQ4 102 aa8.28□□□□□ -1.08
CCDC78-216ENST00000544996 LCE2CQ5TA81 110 aa8.28□□□□□ -1.08
CCDC78-216ENST00000544996 PRO0461Q9UI25 63 aa8.28□□□□□ -1.08
CCDC78-216ENST00000544996 A8MUU9 505 aa8.27□□□□□ -1.09
CCDC78-216ENST00000544996 KRTAP19-2Q3LHN2 52 aa8.27□□□□□ -1.09
CCDC78-216ENST00000544996 PDE6GP18545 87 aa8.25□□□□□ -1.09
CCDC78-216ENST00000544996 LOC110117498A0A087WWA1 95 aa8.23□□□□□ -1.09
CCDC78-216ENST00000544996 IGHV6-1A0A0B4J1U7 121 aa8.23□□□□□ -1.09
CCDC78-216ENST00000544996 A0A1B0GW54 56 aa8.23□□□□□ -1.09
CCDC78-216ENST00000544996 COX6B2Q6YFQ2 88 aa8.23□□□□□ -1.09
CCDC78-216ENST00000544996 Q6ZQT0 140 aa8.23□□□□□ -1.09
CCDC78-216ENST00000544996 J3KT08 172 aa8.22□□□□□ -1.09
CCDC78-216ENST00000544996 C14orf132Q9NPU4 83 aa8.2□□□□□ -1.1
CCDC78-216ENST00000544996 MT1HP80294 61 aa8.19□□□□□ -1.1
CCDC78-216ENST00000544996 A0A1B0GVX0 72 aa8.18□□□□□ -1.1
CCDC78-216ENST00000544996 KRTAP16-1A8MUX0 517 aa8.18□□□□□ -1.1
CCDC78-216ENST00000544996 C8orf87E5RJ46 101 aa8.18□□□□□ -1.1
CCDC78-216ENST00000544996 ETDBQ3ZM63 59 aa8.18□□□□□ -1.1
CCDC78-216ENST00000544996 NOTCH2NLQ7Z3S9 236 aa8.18□□□□□ -1.1
CCDC78-216ENST00000544996 KRTAP9-2Q9BYQ4 174 aa8.17□□□□□ -1.1
CCDC78-216ENST00000544996 H3BT86 120 aa8.16□□□□□ -1.1
CCDC78-216ENST00000544996 NDUFB1O75438 58 aa8.16□□□□□ -1.1
CCDC78-216ENST00000544996 SMCPP49901 116 aaPredicted RBP8.14□□□□□ -1.11
CCDC78-216ENST00000544996 M0R2T5 61 aa8.12□□□□□ -1.11
CCDC78-216ENST00000544996 A8MWP4 228 aa8.1□□□□□ -1.11
CCDC78-216ENST00000544996 NREPQ16612 68 aa8.1□□□□□ -1.11
CCDC78-216ENST00000544996 C8orf17Q9NRJ1 99 aa8.05□□□□□ -1.12
CCDC78-216ENST00000544996 IGKV3D-7A0A0C4DH55 119 aa8.04□□□□□ -1.12
CCDC78-216ENST00000544996 MT-ATP8P03928 68 aa8.04□□□□□ -1.12
CCDC78-216ENST00000544996 KRTAP10-6P60371 365 aaPredicted RBP8.02□□□□□ -1.13
CCDC78-216ENST00000544996 PRR15Q8IV56 129 aa8.02□□□□□ -1.13
CCDC78-216ENST00000544996 Q8N9P0 234 aaPredicted RBP8.01□□□□□ -1.13
CCDC78-216ENST00000544996 ZCCHC13Q8WW36 166 aaKnown RBP8.01□□□□□ -1.13
CCDC78-216ENST00000544996 LORP23490 312 aaPredicted RBP8□□□□□ -1.13
CCDC78-216ENST00000544996 LCE2DQ5TA82 110 aaPredicted RBP8□□□□□ -1.13
CCDC78-216ENST00000544996 FAM236DA0A1B0GTK5 79 aa7.99□□□□□ -1.13
CCDC78-216ENST00000544996 FAM240AA0A1B0GVK7 77 aa7.99□□□□□ -1.13
CCDC78-216ENST00000544996 FAM236CP0DP71 79 aa7.99□□□□□ -1.13
CCDC78-216ENST00000544996 Q6ZVQ6 151 aa7.99□□□□□ -1.13
CCDC78-216ENST00000544996 ANAPC13Q9BS18 74 aa7.99□□□□□ -1.13
CCDC78-216ENST00000544996 RBM12B-AS1Q9P1G2 102 aa7.99□□□□□ -1.13
CCDC78-216ENST00000544996 BPY2O14599 106 aa7.96□□□□□ -1.14
CCDC78-216ENST00000544996 HRES1P13985 223 aa7.95□□□□□ -1.14
CCDC78-216ENST00000544996 TMEM254Q8TBM7 123 aa7.94□□□□□ -1.14
CCDC78-216ENST00000544996 FLGP20930 4061 aaPredicted RBP7.93□□□□□ -1.14
CCDC78-216ENST00000544996 K7EQZ3 153 aa7.93□□□□□ -1.14
CCDC78-216ENST00000544996 SPINK7P58062 85 aa7.93□□□□□ -1.14
CCDC78-216ENST00000544996 MRPL34Q9BQ48 92 aaKnown RBP7.93□□□□□ -1.14
CCDC78-216ENST00000544996 MMP24-AS1A0A0U1RRL7 71 aa7.92□□□□□ -1.14
CCDC78-216ENST00000544996 MPLKIPQ8TAP9 179 aa7.92□□□□□ -1.14
CCDC78-216ENST00000544996 IMUPQ9GZP8 106 aa7.92□□□□□ -1.14
CCDC78-216ENST00000544996 hDV103S1A0JD37 113 aa7.91□□□□□ -1.14
CCDC78-216ENST00000544996 ACYP1P07311 99 aa7.91□□□□□ -1.14
CCDC78-216ENST00000544996 NDUFS5O43920 106 aa7.88□□□□□ -1.15
CCDC78-216ENST00000544996 KRTAP9-6A0A140TA67 174 aa7.87□□□□□ -1.15
CCDC78-216ENST00000544996 UBL5Q9BZL1 73 aa7.87□□□□□ -1.15
CCDC78-216ENST00000544996 Q8N9L7 120 aa7.84□□□□□ -1.15
CCDC78-216ENST00000544996 LINC00846Q9NV44 126 aa7.84□□□□□ -1.15
CCDC78-216ENST00000544996 CASC2Q6XLA1 102 aa7.82□□□□□ -1.16
CCDC78-216ENST00000544996 WFDC13Q8IUB5 93 aa7.82□□□□□ -1.16
CCDC78-216ENST00000544996 CCDC179H3BU77 68 aa7.8□□□□□ -1.16
CCDC78-216ENST00000544996 LINC00643Q86TS7 51 aa7.8□□□□□ -1.16
CCDC78-216ENST00000544996 HCG22E2RYF7 251 aa7.76□□□□□ -1.17
CCDC78-216ENST00000544996 KRTAP9-8Q9BYQ0 159 aa7.76□□□□□ -1.17
CCDC78-216ENST00000544996 CRCT1Q9UGL9 99 aa7.76□□□□□ -1.17
CCDC78-216ENST00000544996 UQCRQO14949 82 aa7.74□□□□□ -1.17
CCDC78-216ENST00000544996 IGKV2D-30A0A075B6S6 120 aa7.73□□□□□ -1.17
CCDC78-216ENST00000544996 IGKV2-30P06310 120 aa7.73□□□□□ -1.17
CCDC78-216ENST00000544996 CXCL6P80162 114 aa7.73□□□□□ -1.17
CCDC78-216ENST00000544996 Q5W150 140 aa7.73□□□□□ -1.17
CCDC78-216ENST00000544996 HIST1H4AP62805 103 aaKnown RBP7.71□□□□□ -1.18
CCDC78-216ENST00000544996 C7orf65Q6ZTY9 151 aa7.71□□□□□ -1.18
CCDC78-216ENST00000544996 FSIP2Q5CZC0 6907 aa7.7□□□□□ -1.18
CCDC78-216ENST00000544996 RPS28P62857 69 aaKnown RBP7.7□□□□□ -1.18
CCDC78-216ENST00000544996 SMIM20Q8N5G0 67 aa7.7□□□□□ -1.18
CCDC78-216ENST00000544996 FAM236AA0A1B0GUQ0 79 aa7.67□□□□□ -1.18
CCDC78-216ENST00000544996 FAM236BA0A1B0GV22 79 aa7.67□□□□□ -1.18
CCDC78-216ENST00000544996 ATOX1O00244 68 aa7.67□□□□□ -1.18
CCDC78-216ENST00000544996 COX7CP15954 63 aa7.67□□□□□ -1.18
CCDC78-216ENST00000544996 MT2AP02795 61 aa7.66□□□□□ -1.18
CCDC78-216ENST00000544996 H1FX-AS1Q4G0G2 97 aa7.64□□□□□ -1.19
CCDC78-216ENST00000544996 KRTAP10-10P60014 251 aa7.62□□□□□ -1.19
CCDC78-216ENST00000544996 TP53AIP1Q9HCN2 124 aa7.62□□□□□ -1.19
CCDC78-216ENST00000544996 MT1FP04733 61 aa7.6□□□□□ -1.19
CCDC78-216ENST00000544996 TMEM258P61165 79 aa7.58□□□□□ -1.2
CCDC78-216ENST00000544996 ATP5EP2Q5VTU8 51 aa7.58□□□□□ -1.2
CCDC78-216ENST00000544996 C4orf26Q17RF5 130 aa7.57□□□□□ -1.2
CCDC78-216ENST00000544996 SERP2Q8N6R1 65 aa7.56□□□□□ -1.2
CCDC78-216ENST00000544996 C5orf47Q569G3 176 aa7.55□□□□□ -1.2
CCDC78-216ENST00000544996 KRTAP9-3Q9BYQ3 159 aa7.51□□□□□ -1.21
CCDC78-216ENST00000544996 C1orf64Q8NEQ6 169 aa7.45□□□□□ -1.22
CCDC78-216ENST00000544996 TRAV22A0A0B4J277 110 aa7.44□□□□□ -1.22
CCDC78-216ENST00000544996 LCE2BO14633 110 aa7.44□□□□□ -1.22
CCDC78-216ENST00000544996 KRTAP3-1Q9BYR8 98 aa7.42□□□□□ -1.22
CCDC78-216ENST00000544996 CYP4F30PQ9H0H9 118 aa7.42□□□□□ -1.22
CCDC78-216ENST00000544996 USH2AO75445 5202 aa7.4□□□□□ -1.22
CCDC78-216ENST00000544996 LOC101927531A0A1B0GV80 90 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms