RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 PRR15LQ9BU68 103 aa7.62□□□□□ -1.19
CPSF7-223ENST00000544669 CHKB-CPT1BH3BT56 60 aa7.62□□□□□ -1.19
CPSF7-223ENST00000544669 LINC01558Q9Y6Z2 57 aa7.62□□□□□ -1.19
CPSF7-223ENST00000544669 ACYP2P14621 99 aa7.6□□□□□ -1.19
CPSF7-223ENST00000544669 A0A087X002 238 aa7.59□□□□□ -1.19
CPSF7-223ENST00000544669 NOTCH2NLQ7Z3S9 236 aa7.59□□□□□ -1.19
CPSF7-223ENST00000544669 KRTAP13-3Q3SY46 172 aa7.59□□□□□ -1.19
CPSF7-223ENST00000544669 LYSTQ99698 3801 aa7.57□□□□□ -1.2
CPSF7-223ENST00000544669 HRES1P13985 223 aa7.57□□□□□ -1.2
CPSF7-223ENST00000544669 C4orf48Q5BLP8 95 aa7.57□□□□□ -1.2
CPSF7-223ENST00000544669 KRTAP10-2P60368 255 aa7.56□□□□□ -1.2
CPSF7-223ENST00000544669 CSMD3Q7Z407 3707 aa7.55□□□□□ -1.2
CPSF7-223ENST00000544669 SRRM2Q9UQ35 2752 aaKnown RBP7.55□□□□□ -1.2
CPSF7-223ENST00000544669 Q5W150 140 aa7.54□□□□□ -1.2
CPSF7-223ENST00000544669 A6NED7 52 aa7.53□□□□□ -1.2
CPSF7-223ENST00000544669 DNAH7Q8WXX0 4024 aa7.53□□□□□ -1.2
CPSF7-223ENST00000544669 DNAH17Q9UFH2 4485 aa7.53□□□□□ -1.2
CPSF7-223ENST00000544669 SPINK1P00995 79 aa7.52□□□□□ -1.2
CPSF7-223ENST00000544669 ATP11AUNQ6ZP68 121 aa7.52□□□□□ -1.2
CPSF7-223ENST00000544669 TENM2Q9NT68 2774 aa7.52□□□□□ -1.21
CPSF7-223ENST00000544669 KRTAP13-2Q52LG2 175 aa7.52□□□□□ -1.21
CPSF7-223ENST00000544669 SPAG11AQ6PDA7 123 aa7.52□□□□□ -1.21
CPSF7-223ENST00000544669 KRTAP10-1P60331 282 aa7.5□□□□□ -1.21
CPSF7-223ENST00000544669 DMAC1Q96GE9 116 aa7.5□□□□□ -1.21
CPSF7-223ENST00000544669 PRKDCP78527 4128 aaKnown RBP7.5□□□□□ -1.21
CPSF7-223ENST00000544669 RPS29P62273 56 aaKnown RBP7.5□□□□□ -1.21
CPSF7-223ENST00000544669 IGKV2-30P06310 120 aa7.49□□□□□ -1.21
CPSF7-223ENST00000544669 CDC42SE1Q9NRR8 79 aa7.49□□□□□ -1.21
CPSF7-223ENST00000544669 STARD9Q9P2P6 4700 aa7.49□□□□□ -1.21
CPSF7-223ENST00000544669 PMAIP1Q13794 54 aa7.48□□□□□ -1.21
CPSF7-223ENST00000544669 KRTAP21-3Q3LHN1 58 aa7.47□□□□□ -1.21
CPSF7-223ENST00000544669 PLA2G1BP04054 148 aaKnown RBP7.46□□□□□ -1.21
CPSF7-223ENST00000544669 KRTAP1-4P0C5Y4 121 aa7.46□□□□□ -1.21
CPSF7-223ENST00000544669 TYMSOSQ8TAI1 123 aa7.46□□□□□ -1.21
CPSF7-223ENST00000544669 PRR26Q8N8Z3 221 aa7.45□□□□□ -1.22
CPSF7-223ENST00000544669 DNAH8Q96JB1 4490 aa7.44□□□□□ -1.22
CPSF7-223ENST00000544669 HECTD4Q9Y4D8 3996 aa7.44□□□□□ -1.22
CPSF7-223ENST00000544669 KRTAP16-1A8MUX0 517 aa7.43□□□□□ -1.22
CPSF7-223ENST00000544669 DNAH2Q9P225 4427 aa7.42□□□□□ -1.22
CPSF7-223ENST00000544669 DNAH6Q9C0G6 4158 aa7.41□□□□□ -1.22
CPSF7-223ENST00000544669 LCA10Q71F78 164 aa7.4□□□□□ -1.23
CPSF7-223ENST00000544669 SPTSSBQ8NFR3 76 aa7.37□□□□□ -1.23
CPSF7-223ENST00000544669 LINC00304Q8N9R0 145 aa7.36□□□□□ -1.23
CPSF7-223ENST00000544669 MEGF8Q7Z7M0 2845 aa7.36□□□□□ -1.23
CPSF7-223ENST00000544669 A0A1B0GU69 56 aa7.34□□□□□ -1.23
CPSF7-223ENST00000544669 KMT2AQ03164 3969 aa7.33□□□□□ -1.24
CPSF7-223ENST00000544669 IGKV2D-30A0A075B6S6 120 aa7.32□□□□□ -1.24
CPSF7-223ENST00000544669 C7orf65Q6ZTY9 151 aa7.32□□□□□ -1.24
CPSF7-223ENST00000544669 RETNLBQ9BQ08 111 aa7.32□□□□□ -1.24
CPSF7-223ENST00000544669 KTN1-AS1Q86SY8 53 aa7.31□□□□□ -1.24
CPSF7-223ENST00000544669 ALMS1Q8TCU4 4167 aa7.31□□□□□ -1.24
CPSF7-223ENST00000544669 TGP01266 2768 aa7.31□□□□□ -1.24
CPSF7-223ENST00000544669 FBN3Q75N90 2809 aa7.3□□□□□ -1.24
CPSF7-223ENST00000544669 SPINK7P58062 85 aa7.3□□□□□ -1.24
CPSF7-223ENST00000544669 A6NN06 94 aa7.27□□□□□ -1.25
CPSF7-223ENST00000544669 A8MU10 97 aa7.27□□□□□ -1.25
CPSF7-223ENST00000544669 FRAS1Q86XX4 4008 aa7.25□□□□□ -1.25
CPSF7-223ENST00000544669 UQCR11O14957 56 aa7.25□□□□□ -1.25
CPSF7-223ENST00000544669 DNAH11Q96DT5 4516 aa7.25□□□□□ -1.25
CPSF7-223ENST00000544669 SEC61GP60059 68 aa7.24□□□□□ -1.25
CPSF7-223ENST00000544669 DNAH5Q8TE73 4624 aa7.23□□□□□ -1.25
CPSF7-223ENST00000544669 SPATA8Q6RVD6 105 aa7.22□□□□□ -1.25
CPSF7-223ENST00000544669 C20orf166-AS1Q96NR2 134 aa7.21□□□□□ -1.26
CPSF7-223ENST00000544669 A8MUU9 505 aa7.2□□□□□ -1.26
CPSF7-223ENST00000544669 MIR22HGQ0VDD5 57 aa7.17□□□□□ -1.26
CPSF7-223ENST00000544669 LRP1BQ9NZR2 4599 aa7.16□□□□□ -1.26
CPSF7-223ENST00000544669 A0A1B0GVY2 172 aa7.15□□□□□ -1.27
CPSF7-223ENST00000544669 PKD1P98161 4303 aa7.15□□□□□ -1.27
CPSF7-223ENST00000544669 FAT2Q9NYQ8 4349 aa7.11□□□□□ -1.27
CPSF7-223ENST00000544669 SMR3BP02814 79 aaPredicted RBP7.11□□□□□ -1.27
CPSF7-223ENST00000544669 DNHD1Q96M86 4753 aa7.1□□□□□ -1.27
CPSF7-223ENST00000544669 KRTAP10-4P60372 401 aaPredicted RBP7.08□□□□□ -1.28
CPSF7-223ENST00000544669 Q8N1X5 172 aa7.08□□□□□ -1.28
CPSF7-223ENST00000544669 C9orf92A6NGG3 77 aa7.06□□□□□ -1.28
CPSF7-223ENST00000544669 VPS13BQ7Z7G8 4022 aa7.03□□□□□ -1.28
CPSF7-223ENST00000544669 RBM12B-AS1Q9P1G2 102 aa7.03□□□□□ -1.28
CPSF7-223ENST00000544669 SACSQ9NZJ4 4579 aa7.02□□□□□ -1.29
CPSF7-223ENST00000544669 COX6B2Q6YFQ2 88 aa6.99□□□□□ -1.29
CPSF7-223ENST00000544669 HYDINQ4G0P3 5121 aa6.99□□□□□ -1.29
CPSF7-223ENST00000544669 A0A1B0GU33 70 aa6.94□□□□□ -1.3
CPSF7-223ENST00000544669 KRTAP10-8P60410 259 aa6.92□□□□□ -1.3
CPSF7-223ENST00000544669 KRTAP3-1Q9BYR8 98 aa6.92□□□□□ -1.3
CPSF7-223ENST00000544669 H1FX-AS1Q4G0G2 97 aa6.9□□□□□ -1.31
CPSF7-223ENST00000544669 K7ERS5 55 aa6.88□□□□□ -1.31
CPSF7-223ENST00000544669 RPL37P61927 97 aaKnown RBP6.87□□□□□ -1.31
CPSF7-223ENST00000544669 DYNC1H1Q14204 4646 aaKnown RBP6.86□□□□□ -1.31
CPSF7-223ENST00000544669 PKHD1L1Q86WI1 4243 aa6.85□□□□□ -1.31
CPSF7-223ENST00000544669 Q5VSD8 79 aa6.83□□□□□ -1.32
CPSF7-223ENST00000544669 H0YAA0 97 aa6.83□□□□□ -1.32
CPSF7-223ENST00000544669 APOBP04114 4563 aaKnown RBP6.82□□□□□ -1.32
CPSF7-223ENST00000544669 PRAC1Q96KF2 57 aa6.78□□□□□ -1.32
CPSF7-223ENST00000544669 PKHD1P08F94 4074 aa6.78□□□□□ -1.32
CPSF7-223ENST00000544669 LINC01554Q52M75 96 aa6.76□□□□□ -1.33
CPSF7-223ENST00000544669 XP32Q5T750 250 aa6.76□□□□□ -1.33
CPSF7-223ENST00000544669 FLG2Q5D862 2391 aaPredicted RBP6.75□□□□□ -1.33
CPSF7-223ENST00000544669 ADM2Q7Z4H4 148 aa6.74□□□□□ -1.33
CPSF7-223ENST00000544669 S4R3F8 94 aa6.73□□□□□ -1.33
CPSF7-223ENST00000544669 FAT1Q14517 4588 aa6.7□□□□□ -1.34
CPSF7-223ENST00000544669 CSAG1Q6PB30 78 aa6.69□□□□□ -1.34
CPSF7-223ENST00000544669 RYR2Q92736 4967 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms