RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 IGLV7-43P04211 117 aa8.76□□□□□ -1.01
LIMS1-215ENST00000544547 PDZD2O15018 2839 aa8.76□□□□□ -1.01
LIMS1-215ENST00000544547 TENM3Q9P273 2699 aa8.75□□□□□ -1.01
LIMS1-215ENST00000544547 C9orf92A6NGG3 77 aa8.75□□□□□ -1.01
LIMS1-215ENST00000544547 J3QL48 77 aa8.74□□□□□ -1.01
LIMS1-215ENST00000544547 A6NN06 94 aa8.74□□□□□ -1.01
LIMS1-215ENST00000544547 NBPF19A0A087WUL8 3843 aa8.73□□□□□ -1.01
LIMS1-215ENST00000544547 CSAG1Q6PB30 78 aa8.71□□□□□ -1.02
LIMS1-215ENST00000544547 TENM4Q6N022 2769 aa8.71□□□□□ -1.02
LIMS1-215ENST00000544547 FBN1P35555 2871 aaKnown RBP8.7□□□□□ -1.02
LIMS1-215ENST00000544547 ADM2Q7Z4H4 148 aa8.7□□□□□ -1.02
LIMS1-215ENST00000544547 COX6B2Q6YFQ2 88 aa8.67□□□□□ -1.02
LIMS1-215ENST00000544547 PKD1L1Q8TDX9 2849 aa8.66□□□□□ -1.02
LIMS1-215ENST00000544547 Q8N1X5 172 aa8.66□□□□□ -1.02
LIMS1-215ENST00000544547 OTOGQ6ZRI0 2925 aa8.66□□□□□ -1.02
LIMS1-215ENST00000544547 SPINT4Q6UDR6 99 aa8.64□□□□□ -1.03
LIMS1-215ENST00000544547 KRTAP7-1Q8IUC3 87 aa8.64□□□□□ -1.03
LIMS1-215ENST00000544547 KRTAP1-5Q9BYS1 174 aa8.64□□□□□ -1.03
LIMS1-215ENST00000544547 SPRR1BP22528 89 aa8.59□□□□□ -1.03
LIMS1-215ENST00000544547 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-215ENST00000544547 A0A087X002 238 aa8.59□□□□□ -1.03
LIMS1-215ENST00000544547 NOTCH2NLQ7Z3S9 236 aa8.59□□□□□ -1.03
LIMS1-215ENST00000544547 CRIPTQ9P021 101 aa8.56□□□□□ -1.04
LIMS1-215ENST00000544547 KRTAP11-1Q8IUC1 163 aa8.56□□□□□ -1.04
LIMS1-215ENST00000544547 Q6ZR54 194 aa8.55□□□□□ -1.04
LIMS1-215ENST00000544547 Q5W150 140 aa8.53□□□□□ -1.04
LIMS1-215ENST00000544547 PANO1I0J062 215 aa8.48□□□□□ -1.05
LIMS1-215ENST00000544547 A0A0D9SG42 100 aa8.47□□□□□ -1.05
LIMS1-215ENST00000544547 TRRAPQ9Y4A5 3859 aa8.47□□□□□ -1.05
LIMS1-215ENST00000544547 DMAC1Q96GE9 116 aa8.44□□□□□ -1.06
LIMS1-215ENST00000544547 ZNF469Q96JG9 3925 aaPredicted RBP8.42□□□□□ -1.06
LIMS1-215ENST00000544547 TENM2Q9NT68 2774 aa8.41□□□□□ -1.06
LIMS1-215ENST00000544547 A0A1B0GU33 70 aa8.41□□□□□ -1.06
LIMS1-215ENST00000544547 SPATA8Q6RVD6 105 aa8.41□□□□□ -1.06
LIMS1-215ENST00000544547 PLAC8Q9NZF1 115 aa8.39□□□□□ -1.07
LIMS1-215ENST00000544547 Q6ZSA8 131 aa8.36□□□□□ -1.07
LIMS1-215ENST00000544547 SRRM2Q9UQ35 2752 aaKnown RBP8.32□□□□□ -1.08
LIMS1-215ENST00000544547 ASB16-AS1Q495Z4 193 aa8.28□□□□□ -1.08
LIMS1-215ENST00000544547 ANK3Q12955 4377 aaKnown RBP8.27□□□□□ -1.09
LIMS1-215ENST00000544547 LINC00483Q53H64 154 aa8.27□□□□□ -1.09
LIMS1-215ENST00000544547 TGP01266 2768 aa8.22□□□□□ -1.09
LIMS1-215ENST00000544547 CAMK2N1Q7Z7J9 78 aa8.21□□□□□ -1.1
LIMS1-215ENST00000544547 KRTAP10-1P60331 282 aa8.18□□□□□ -1.1
LIMS1-215ENST00000544547 KRTAP10-2P60368 255 aa8.18□□□□□ -1.1
LIMS1-215ENST00000544547 KRTAP13-1Q8IUC0 172 aa8.18□□□□□ -1.1
LIMS1-215ENST00000544547 KRTAP25-1Q3LHN0 102 aa8.17□□□□□ -1.1
LIMS1-215ENST00000544547 AKAP9Q99996 3911 aa8.16□□□□□ -1.1
LIMS1-215ENST00000544547 Q6ZRN7 208 aaPredicted RBP8.15□□□□□ -1.1
LIMS1-215ENST00000544547 M0R2T5 61 aa8.15□□□□□ -1.11
LIMS1-215ENST00000544547 H1FX-AS1Q4G0G2 97 aa8.11□□□□□ -1.11
LIMS1-215ENST00000544547 ROMO1P60602 79 aa8.11□□□□□ -1.11
LIMS1-215ENST00000544547 LUZP6Q538Z0 58 aa8.09□□□□□ -1.12
LIMS1-215ENST00000544547 Q5VSD8 79 aa8.07□□□□□ -1.12
LIMS1-215ENST00000544547 S4R3F8 94 aa8.07□□□□□ -1.12
LIMS1-215ENST00000544547 CSMD3Q7Z407 3707 aa8.05□□□□□ -1.12
LIMS1-215ENST00000544547 COL7A1Q02388 2944 aa8.04□□□□□ -1.12
LIMS1-215ENST00000544547 R4GN34 69 aa8.03□□□□□ -1.12
LIMS1-215ENST00000544547 RPL37P61927 97 aaKnown RBP8.03□□□□□ -1.12
LIMS1-215ENST00000544547 A8MUU9 505 aa8.01□□□□□ -1.13
LIMS1-215ENST00000544547 SEC61BP60468 96 aaKnown RBP8□□□□□ -1.13
LIMS1-215ENST00000544547 NDUFAF8A1L188 74 aa7.97□□□□□ -1.13
LIMS1-215ENST00000544547 FBN3Q75N90 2809 aa7.96□□□□□ -1.14
LIMS1-215ENST00000544547 KRTAP13-2Q52LG2 175 aa7.95□□□□□ -1.14
LIMS1-215ENST00000544547 H0YAA0 97 aa7.91□□□□□ -1.14
LIMS1-215ENST00000544547 KRTAP13-3Q3SY46 172 aa7.86□□□□□ -1.15
LIMS1-215ENST00000544547 M0QZ58 72 aa7.86□□□□□ -1.15
LIMS1-215ENST00000544547 KRTAP16-1A8MUX0 517 aa7.82□□□□□ -1.16
LIMS1-215ENST00000544547 C10orf95Q9H7T3 257 aa7.81□□□□□ -1.16
LIMS1-215ENST00000544547 MEGF8Q7Z7M0 2845 aa7.8□□□□□ -1.16
LIMS1-215ENST00000544547 RPS29P62273 56 aaKnown RBP7.68□□□□□ -1.18
LIMS1-215ENST00000544547 C20orf166-AS1Q96NR2 134 aa7.68□□□□□ -1.18
LIMS1-215ENST00000544547 KRTAP1-4P0C5Y4 121 aa7.65□□□□□ -1.19
LIMS1-215ENST00000544547 HUWE1Q7Z6Z7 4374 aaKnown RBP7.62□□□□□ -1.19
LIMS1-215ENST00000544547 A0A0A0MQY5 61 aa7.62□□□□□ -1.19
LIMS1-215ENST00000544547 PLAC4Q8WY50 150 aa7.6□□□□□ -1.19
LIMS1-215ENST00000544547 DNAH10Q8IVF4 4471 aa7.57□□□□□ -1.2
LIMS1-215ENST00000544547 P0C880 135 aa7.52□□□□□ -1.21
LIMS1-215ENST00000544547 TPRXLQ17RH7 258 aa7.44□□□□□ -1.22
LIMS1-215ENST00000544547 ANK2Q01484 3957 aa7.44□□□□□ -1.22
LIMS1-215ENST00000544547 KRTAP21-3Q3LHN1 58 aa7.42□□□□□ -1.22
LIMS1-215ENST00000544547 KRTAP3-1Q9BYR8 98 aa7.4□□□□□ -1.22
LIMS1-215ENST00000544547 PLECQ15149 4684 aaKnown RBP7.37□□□□□ -1.23
LIMS1-215ENST00000544547 DNAH9Q9NYC9 4486 aa7.33□□□□□ -1.24
LIMS1-215ENST00000544547 KRTAP12-2P59991 146 aa7.28□□□□□ -1.24
LIMS1-215ENST00000544547 XP32Q5T750 250 aa7.28□□□□□ -1.24
LIMS1-215ENST00000544547 LYSTQ99698 3801 aa7.27□□□□□ -1.24
LIMS1-215ENST00000544547 KRTAP13-4Q3LI77 160 aa7.27□□□□□ -1.25
LIMS1-215ENST00000544547 TNP1P09430 55 aa7.26□□□□□ -1.25
LIMS1-215ENST00000544547 DNAH1Q9P2D7 4330 aa7.25□□□□□ -1.25
LIMS1-215ENST00000544547 KRTAP10-8P60410 259 aa7.25□□□□□ -1.25
LIMS1-215ENST00000544547 DNAH11Q96DT5 4516 aa7.21□□□□□ -1.26
LIMS1-215ENST00000544547 KRTAP10-6P60371 365 aaPredicted RBP7.17□□□□□ -1.26
LIMS1-215ENST00000544547 STARD9Q9P2P6 4700 aa7.15□□□□□ -1.26
LIMS1-215ENST00000544547 A0A1B0GVY2 172 aa7.13□□□□□ -1.27
LIMS1-215ENST00000544547 KRTAP12-1P59990 96 aa7.12□□□□□ -1.27
LIMS1-215ENST00000544547 DNAH8Q96JB1 4490 aa7.11□□□□□ -1.27
LIMS1-215ENST00000544547 KRTAP15-1Q3LI76 137 aa7.1□□□□□ -1.27
LIMS1-215ENST00000544547 KMT2AQ03164 3969 aa7.08□□□□□ -1.28
LIMS1-215ENST00000544547 VPS13DQ5THJ4 4388 aa7.06□□□□□ -1.28
LIMS1-215ENST00000544547 FRAS1Q86XX4 4008 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms