RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SSBP3-AS1Q7Z2R9 100 aa8.42□□□□□ -1.06
VPS33A-209ENST00000544349 SPINK6Q6UWN8 80 aa8.41□□□□□ -1.06
VPS33A-209ENST00000544349 PRR4Q16378 134 aa8.41□□□□□ -1.06
VPS33A-209ENST00000544349 H0Y9P7 68 aa8.39□□□□□ -1.07
VPS33A-209ENST00000544349 KRTAP13-2Q52LG2 175 aa8.39□□□□□ -1.07
VPS33A-209ENST00000544349 LINC00208Q96KT6 92 aa8.39□□□□□ -1.07
VPS33A-209ENST00000544349 TRAV22A0A0B4J277 110 aa8.39□□□□□ -1.07
VPS33A-209ENST00000544349 MP68P56378 58 aa8.39□□□□□ -1.07
VPS33A-209ENST00000544349 APOBP04114 4563 aaKnown RBP8.38□□□□□ -1.07
VPS33A-209ENST00000544349 hDV103S1A0JD37 113 aa8.38□□□□□ -1.07
VPS33A-209ENST00000544349 KRTAP10-4P60372 401 aaPredicted RBP8.38□□□□□ -1.07
VPS33A-209ENST00000544349 C1orf64Q8NEQ6 169 aa8.36□□□□□ -1.07
VPS33A-209ENST00000544349 PLA2G1BP04054 148 aaKnown RBP8.36□□□□□ -1.07
VPS33A-209ENST00000544349 CD164Q04900 197 aa8.36□□□□□ -1.07
VPS33A-209ENST00000544349 NDUFB1O75438 58 aa8.35□□□□□ -1.07
VPS33A-209ENST00000544349 MPLKIPQ8TAP9 179 aa8.35□□□□□ -1.07
VPS33A-209ENST00000544349 ASB16-AS1Q495Z4 193 aa8.34□□□□□ -1.07
VPS33A-209ENST00000544349 C8orf17Q9NRJ1 99 aa8.33□□□□□ -1.08
VPS33A-209ENST00000544349 IGHV6-1A0A0B4J1U7 121 aa8.32□□□□□ -1.08
VPS33A-209ENST00000544349 CYP4F30PQ9H0H9 118 aa8.32□□□□□ -1.08
VPS33A-209ENST00000544349 A0A1B0GVX0 72 aa8.31□□□□□ -1.08
VPS33A-209ENST00000544349 NOTCH2NLQ7Z3S9 236 aa8.3□□□□□ -1.08
VPS33A-209ENST00000544349 CDK2AP2O75956 126 aa8.3□□□□□ -1.08
VPS33A-209ENST00000544349 H3BPC8 53 aa8.29□□□□□ -1.08
VPS33A-209ENST00000544349 TYMSOSQ8TAI1 123 aa8.29□□□□□ -1.08
VPS33A-209ENST00000544349 FAT1Q14517 4588 aa8.27□□□□□ -1.09
VPS33A-209ENST00000544349 FAM229AH3BQW9 127 aa8.26□□□□□ -1.09
VPS33A-209ENST00000544349 PRR26Q8N8Z3 221 aa8.26□□□□□ -1.09
VPS33A-209ENST00000544349 KRTAP17-1Q9BYP8 105 aa8.24□□□□□ -1.09
VPS33A-209ENST00000544349 SPANXA2-OT1Q8N9U9 137 aa8.23□□□□□ -1.09
VPS33A-209ENST00000544349 NDUFS5O43920 106 aa8.23□□□□□ -1.09
VPS33A-209ENST00000544349 MRPL34Q9BQ48 92 aaKnown RBP8.22□□□□□ -1.09
VPS33A-209ENST00000544349 C4orf48Q5BLP8 95 aa8.21□□□□□ -1.09
VPS33A-209ENST00000544349 Q5VSD8 79 aa8.21□□□□□ -1.09
VPS33A-209ENST00000544349 PCOTHQ58A44 107 aa8.21□□□□□ -1.1
VPS33A-209ENST00000544349 TP53AIP1Q9HCN2 124 aa8.21□□□□□ -1.1
VPS33A-209ENST00000544349 HERC2O95714 4834 aa8.2□□□□□ -1.1
VPS33A-209ENST00000544349 SPINK1P00995 79 aa8.2□□□□□ -1.1
VPS33A-209ENST00000544349 LIMD2Q9BT23 127 aa8.19□□□□□ -1.1
VPS33A-209ENST00000544349 LINC00304Q8N9R0 145 aa8.18□□□□□ -1.1
VPS33A-209ENST00000544349 Q1T7F1 81 aa8.17□□□□□ -1.1
VPS33A-209ENST00000544349 HSPG2P98160 4391 aa8.17□□□□□ -1.1
VPS33A-209ENST00000544349 C1orf195Q5TG92 126 aa8.17□□□□□ -1.1
VPS33A-209ENST00000544349 SPAG11AQ6PDA7 123 aa8.15□□□□□ -1.1
VPS33A-209ENST00000544349 RPS29P62273 56 aaKnown RBP8.14□□□□□ -1.11
VPS33A-209ENST00000544349 IGLV7-46A0A075B6I9 117 aa8.14□□□□□ -1.11
VPS33A-209ENST00000544349 Q5W150 140 aa8.14□□□□□ -1.11
VPS33A-209ENST00000544349 BRK1Q8WUW1 75 aa8.14□□□□□ -1.11
VPS33A-209ENST00000544349 PKHD1L1Q86WI1 4243 aa8.14□□□□□ -1.11
VPS33A-209ENST00000544349 PRO0628Q9UI54 55 aa8.13□□□□□ -1.11
VPS33A-209ENST00000544349 RYR1P21817 5038 aa8.12□□□□□ -1.11
VPS33A-209ENST00000544349 PSPHP1O15172 72 aa8.12□□□□□ -1.11
VPS33A-209ENST00000544349 KRTAP13-3Q3SY46 172 aa8.12□□□□□ -1.11
VPS33A-209ENST00000544349 COA5Q86WW8 74 aa8.11□□□□□ -1.11
VPS33A-209ENST00000544349 Q8N1X5 172 aa8.09□□□□□ -1.11
VPS33A-209ENST00000544349 Q8N9P0 234 aaPredicted RBP8.08□□□□□ -1.12
VPS33A-209ENST00000544349 A8MUN3 132 aa8.07□□□□□ -1.12
VPS33A-209ENST00000544349 C8orf87E5RJ46 101 aa8.06□□□□□ -1.12
VPS33A-209ENST00000544349 PCLOQ9Y6V0 5065 aa8.05□□□□□ -1.12
VPS33A-209ENST00000544349 KRTAP10-8P60410 259 aa8.05□□□□□ -1.12
VPS33A-209ENST00000544349 KIAA1109Q2LD37 5005 aa8.04□□□□□ -1.12
VPS33A-209ENST00000544349 LINC00313P59037 77 aa8.03□□□□□ -1.12
VPS33A-209ENST00000544349 LOC101927531A0A1B0GV80 90 aa8.03□□□□□ -1.12
VPS33A-209ENST00000544349 Q5VV11 94 aa8.02□□□□□ -1.13
VPS33A-209ENST00000544349 HRES1P13985 223 aa8.01□□□□□ -1.13
VPS33A-209ENST00000544349 RETNLBQ9BQ08 111 aa8.01□□□□□ -1.13
VPS33A-209ENST00000544349 KRTAP16-1A8MUX0 517 aa8□□□□□ -1.13
VPS33A-209ENST00000544349 V9GYY9 64 aa8□□□□□ -1.13
VPS33A-209ENST00000544349 PRR15LQ9BU68 103 aa7.98□□□□□ -1.13
VPS33A-209ENST00000544349 LRP1Q07954 4544 aaKnown RBP7.96□□□□□ -1.13
VPS33A-209ENST00000544349 A8MU10 97 aa7.96□□□□□ -1.14
VPS33A-209ENST00000544349 TNXBP22105 4242 aa7.94□□□□□ -1.14
VPS33A-209ENST00000544349 FLG2Q5D862 2391 aaPredicted RBP7.94□□□□□ -1.14
VPS33A-209ENST00000544349 FAT3Q8TDW7 4589 aa7.91□□□□□ -1.14
VPS33A-209ENST00000544349 MT1HL1P0DM35 61 aa7.91□□□□□ -1.14
VPS33A-209ENST00000544349 IGKV2-30P06310 120 aa7.9□□□□□ -1.14
VPS33A-209ENST00000544349 KRTAP4-5Q9BYR2 181 aa7.9□□□□□ -1.14
VPS33A-209ENST00000544349 CHKB-CPT1BH3BT56 60 aa7.9□□□□□ -1.15
VPS33A-209ENST00000544349 LCE2DQ5TA82 110 aaPredicted RBP7.88□□□□□ -1.15
VPS33A-209ENST00000544349 Q75L30 129 aa7.88□□□□□ -1.15
VPS33A-209ENST00000544349 LINC01558Q9Y6Z2 57 aa7.87□□□□□ -1.15
VPS33A-209ENST00000544349 ABCA13Q86UQ4 5058 aa7.86□□□□□ -1.15
VPS33A-209ENST00000544349 DMAC1Q96GE9 116 aa7.86□□□□□ -1.15
VPS33A-209ENST00000544349 C9orf92A6NGG3 77 aa7.84□□□□□ -1.15
VPS33A-209ENST00000544349 IGKV2D-30A0A075B6S6 120 aa7.82□□□□□ -1.16
VPS33A-209ENST00000544349 DMBT1Q9UGM3 2413 aaPredicted RBP7.82□□□□□ -1.16
VPS33A-209ENST00000544349 ACYP2P14621 99 aa7.81□□□□□ -1.16
VPS33A-209ENST00000544349 LCA10Q71F78 164 aa7.8□□□□□ -1.16
VPS33A-209ENST00000544349 A6NED7 52 aa7.79□□□□□ -1.16
VPS33A-209ENST00000544349 MYCBP2O75592 4640 aa7.79□□□□□ -1.16
VPS33A-209ENST00000544349 C20orf166-AS1Q96NR2 134 aa7.78□□□□□ -1.16
VPS33A-209ENST00000544349 A8MUU9 505 aa7.77□□□□□ -1.17
VPS33A-209ENST00000544349 SPINK7P58062 85 aa7.76□□□□□ -1.17
VPS33A-209ENST00000544349 CDC42SE1Q9NRR8 79 aa7.7□□□□□ -1.18
VPS33A-209ENST00000544349 C7orf65Q6ZTY9 151 aa7.69□□□□□ -1.18
VPS33A-209ENST00000544349 SPTSSBQ8NFR3 76 aa7.69□□□□□ -1.18
VPS33A-209ENST00000544349 PMAIP1Q13794 54 aa7.64□□□□□ -1.19
VPS33A-209ENST00000544349 XP32Q5T750 250 aa7.64□□□□□ -1.19
VPS33A-209ENST00000544349 J3QL48 77 aa7.63□□□□□ -1.19
VPS33A-209ENST00000544349 ATP11AUNQ6ZP68 121 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms