RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	IGHV6-1	A0A0B4J1U7	121 aa		5.6	□□□□□ -1.51
CPSF7-221	ENST00000543545	BPY2	O14599	106 aa		5.6	□□□□□ -1.51
CPSF7-221	ENST00000543545	NDUFB1	O75438	58 aa		5.6	□□□□□ -1.51
CPSF7-221	ENST00000543545	LRP2	P98164	4655 aa		5.59	□□□□□ -1.51
CPSF7-221	ENST00000543545	ACYP1	P07311	99 aa		5.59	□□□□□ -1.51
CPSF7-221	ENST00000543545	LPA	P08519	4548 aa		5.58	□□□□□ -1.52
CPSF7-221	ENST00000543545		J3QR89	54 aa		5.58	□□□□□ -1.52
CPSF7-221	ENST00000543545	DSCR10	P59022	87 aa		5.58	□□□□□ -1.52
CPSF7-221	ENST00000543545		A0A1B0GVX0	72 aa		5.57	□□□□□ -1.52
CPSF7-221	ENST00000543545		A8MWP4	228 aa		5.57	□□□□□ -1.52
CPSF7-221	ENST00000543545	LINC00313	P59037	77 aa		5.57	□□□□□ -1.52
CPSF7-221	ENST00000543545	XP32	Q5T750	250 aa		5.56	□□□□□ -1.52
CPSF7-221	ENST00000543545	IGKV3D-7	A0A0C4DH55	119 aa		5.55	□□□□□ -1.52
CPSF7-221	ENST00000543545	FAM240A	A0A1B0GVK7	77 aa		5.55	□□□□□ -1.52
CPSF7-221	ENST00000543545	C8orf87	E5RJ46	101 aa		5.54	□□□□□ -1.52
CPSF7-221	ENST00000543545	NOTCH2NL	Q7Z3S9	236 aa		5.53	□□□□□ -1.52
CPSF7-221	ENST00000543545	PRR15	Q8IV56	129 aa		5.53	□□□□□ -1.52
CPSF7-221	ENST00000543545		K7EQZ3	153 aa		5.52	□□□□□ -1.53
CPSF7-221	ENST00000543545		Q8N9L7	120 aa		5.52	□□□□□ -1.53
CPSF7-221	ENST00000543545	C8orf17	Q9NRJ1	99 aa		5.51	□□□□□ -1.53
CPSF7-221	ENST00000543545	SEC61B	P60468	96 aa	Known RBP	5.5	□□□□□ -1.53
CPSF7-221	ENST00000543545	UBR4	Q5T4S7	5183 aa		5.49	□□□□□ -1.53
CPSF7-221	ENST00000543545	CXCL6	P80162	114 aa		5.49	□□□□□ -1.53
CPSF7-221	ENST00000543545		K7ERU9	68 aa		5.48	□□□□□ -1.53
CPSF7-221	ENST00000543545	RPL37	P61927	97 aa	Known RBP	5.48	□□□□□ -1.53
CPSF7-221	ENST00000543545	KRTAP16-1	A8MUX0	517 aa		5.47	□□□□□ -1.53
CPSF7-221	ENST00000543545	PCOTH	Q58A44	107 aa		5.47	□□□□□ -1.53
CPSF7-221	ENST00000543545	ATP11AUN	Q6ZP68	121 aa		5.47	□□□□□ -1.53
CPSF7-221	ENST00000543545		Q75L30	129 aa		5.47	□□□□□ -1.53
CPSF7-221	ENST00000543545	LINC00643	Q86TS7	51 aa		5.47	□□□□□ -1.53
CPSF7-221	ENST00000543545	MMP24-AS1	A0A0U1RRL7	71 aa		5.46	□□□□□ -1.54
CPSF7-221	ENST00000543545	hDV103S1	A0JD37	113 aa		5.46	□□□□□ -1.54
CPSF7-221	ENST00000543545	ATP5EP2	Q5VTU8	51 aa		5.46	□□□□□ -1.54
CPSF7-221	ENST00000543545	WFDC13	Q8IUB5	93 aa		5.46	□□□□□ -1.54
CPSF7-221	ENST00000543545	C20orf166-AS1	Q96NR2	134 aa		5.46	□□□□□ -1.54
CPSF7-221	ENST00000543545		A8MUU9	505 aa		5.45	□□□□□ -1.54
CPSF7-221	ENST00000543545	HIST1H4A	P62805	103 aa	Known RBP	5.45	□□□□□ -1.54
CPSF7-221	ENST00000543545	LCE2A	Q5TA79	106 aa	Predicted RBP	5.45	□□□□□ -1.54
CPSF7-221	ENST00000543545	CASC2	Q6XLA1	102 aa		5.45	□□□□□ -1.54
CPSF7-221	ENST00000543545	RNF213	Q63HN8	5207 aa		5.45	□□□□□ -1.54
CPSF7-221	ENST00000543545	NDUFS5	O43920	106 aa		5.44	□□□□□ -1.54
CPSF7-221	ENST00000543545	TMEM254	Q8TBM7	123 aa		5.44	□□□□□ -1.54
CPSF7-221	ENST00000543545	MRPL34	Q9BQ48	92 aa	Known RBP	5.44	□□□□□ -1.54
CPSF7-221	ENST00000543545	MUC17	Q685J3	4493 aa		5.44	□□□□□ -1.54
CPSF7-221	ENST00000543545	HCG22	E2RYF7	251 aa		5.43	□□□□□ -1.54
CPSF7-221	ENST00000543545		Q8N9P0	234 aa	Predicted RBP	5.41	□□□□□ -1.54
CPSF7-221	ENST00000543545	ZCCHC13	Q8WW36	166 aa	Known RBP	5.37	□□□□□ -1.55
CPSF7-221	ENST00000543545		A0A087WVE0	104 aa		5.36	□□□□□ -1.55
CPSF7-221	ENST00000543545	MT-ATP8	P03928	68 aa		5.34	□□□□□ -1.55
CPSF7-221	ENST00000543545	KRTAP4-1	Q9BYQ7	146 aa		5.34	□□□□□ -1.55
CPSF7-221	ENST00000543545	TP53AIP1	Q9HCN2	124 aa		5.31	□□□□□ -1.56
CPSF7-221	ENST00000543545	SCGB1A1	P11684	91 aa		5.3	□□□□□ -1.56
CPSF7-221	ENST00000543545	IMUP	Q9GZP8	106 aa		5.3	□□□□□ -1.56
CPSF7-221	ENST00000543545	MUC2	Q02817	5179 aa		5.3	□□□□□ -1.56
CPSF7-221	ENST00000543545		Q5W150	140 aa		5.29	□□□□□ -1.56
CPSF7-221	ENST00000543545		A0A0U1RQV1	116 aa		5.28	□□□□□ -1.56
CPSF7-221	ENST00000543545	SPINK7	P58062	85 aa		5.28	□□□□□ -1.56
CPSF7-221	ENST00000543545	IGKV2D-30	A0A075B6S6	120 aa		5.26	□□□□□ -1.57
CPSF7-221	ENST00000543545	IGKV2-30	P06310	120 aa		5.26	□□□□□ -1.57
CPSF7-221	ENST00000543545	UQCRQ	O14949	82 aa		5.25	□□□□□ -1.57
CPSF7-221	ENST00000543545	COX6B2	Q6YFQ2	88 aa		5.24	□□□□□ -1.57
CPSF7-221	ENST00000543545	TRAV22	A0A0B4J277	110 aa		5.22	□□□□□ -1.57
CPSF7-221	ENST00000543545	FAM236A	A0A1B0GUQ0	79 aa		5.22	□□□□□ -1.57
CPSF7-221	ENST00000543545	FAM236B	A0A1B0GV22	79 aa		5.22	□□□□□ -1.57
CPSF7-221	ENST00000543545	C7orf65	Q6ZTY9	151 aa		5.22	□□□□□ -1.57
CPSF7-221	ENST00000543545	FAT4	Q6V0I7	4981 aa		5.22	□□□□□ -1.57
CPSF7-221	ENST00000543545	FAM236D	A0A1B0GTK5	79 aa		5.21	□□□□□ -1.58
CPSF7-221	ENST00000543545		H0Y9P7	68 aa		5.21	□□□□□ -1.58
CPSF7-221	ENST00000543545	FAM236C	P0DP71	79 aa		5.21	□□□□□ -1.58
CPSF7-221	ENST00000543545	LCE2C	Q5TA81	110 aa		5.21	□□□□□ -1.58
CPSF7-221	ENST00000543545	RBM12B-AS1	Q9P1G2	102 aa		5.21	□□□□□ -1.58
CPSF7-221	ENST00000543545	HRES1	P13985	223 aa		5.2	□□□□□ -1.58
CPSF7-221	ENST00000543545	OCR1	Q9BZK8	76 aa		5.2	□□□□□ -1.58
CPSF7-221	ENST00000543545	ATOX1	O00244	68 aa		5.19	□□□□□ -1.58
CPSF7-221	ENST00000543545	MP68	P56378	58 aa		5.19	□□□□□ -1.58
CPSF7-221	ENST00000543545	LOC101927531	A0A1B0GV80	90 aa		5.17	□□□□□ -1.58
CPSF7-221	ENST00000543545	C5orf47	Q569G3	176 aa		5.17	□□□□□ -1.58
CPSF7-221	ENST00000543545	SMIM20	Q8N5G0	67 aa		5.17	□□□□□ -1.58
CPSF7-221	ENST00000543545	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.16	□□□□□ -1.58
CPSF7-221	ENST00000543545	KRTAP4-8	Q9BYQ9	185 aa		5.16	□□□□□ -1.58
CPSF7-221	ENST00000543545	C1orf64	Q8NEQ6	169 aa		5.15	□□□□□ -1.59
CPSF7-221	ENST00000543545	LINC00208	Q96KT6	92 aa		5.15	□□□□□ -1.59
CPSF7-221	ENST00000543545	CYP4F30P	Q9H0H9	118 aa		5.15	□□□□□ -1.59
CPSF7-221	ENST00000543545	TRAV7	A0A075B6U4	112 aa		5.14	□□□□□ -1.59
CPSF7-221	ENST00000543545	KRTAP19-2	Q3LHN2	52 aa		5.14	□□□□□ -1.59
CPSF7-221	ENST00000543545	MPLKIP	Q8TAP9	179 aa		5.14	□□□□□ -1.59
CPSF7-221	ENST00000543545	C4orf26	Q17RF5	130 aa		5.12	□□□□□ -1.59
CPSF7-221	ENST00000543545	KRTAP9-2	Q9BYQ4	174 aa		5.12	□□□□□ -1.59
CPSF7-221	ENST00000543545	KRTAP9-6	A0A140TA67	174 aa		5.11	□□□□□ -1.59
CPSF7-221	ENST00000543545		H3BPC8	53 aa		5.11	□□□□□ -1.59
CPSF7-221	ENST00000543545		M0R2T5	61 aa		5.09	□□□□□ -1.59
CPSF7-221	ENST00000543545	SERP2	Q8N6R1	65 aa		5.08	□□□□□ -1.6
CPSF7-221	ENST00000543545	LOR	P23490	312 aa	Predicted RBP	5.07	□□□□□ -1.6
CPSF7-221	ENST00000543545	MT1H	P80294	61 aa		5.07	□□□□□ -1.6
CPSF7-221	ENST00000543545	FLG	P20930	4061 aa	Predicted RBP	5.06	□□□□□ -1.6
CPSF7-221	ENST00000543545	KLKP1	Q107X0	134 aa		5.05	□□□□□ -1.6
CPSF7-221	ENST00000543545	H1FX-AS1	Q4G0G2	97 aa		5.05	□□□□□ -1.6
CPSF7-221	ENST00000543545	SNURF	Q9Y675	71 aa		5.03	□□□□□ -1.6
CPSF7-221	ENST00000543545	C20orf197	Q8N268	126 aa		5.02	□□□□□ -1.61
CPSF7-221	ENST00000543545	ANAPC13	Q9BS18	74 aa		5.01	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 200.6 ms