RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 KRTAP11-1Q8IUC1 163 aa11□□□□□ -0.65
HDAC4-215ENST00000543185 TNP1P09430 55 aa10.99□□□□□ -0.65
HDAC4-215ENST00000543185 A8MU10 97 aa10.97□□□□□ -0.65
HDAC4-215ENST00000543185 TNRC18O15417 2968 aaPredicted RBP10.96□□□□□ -0.65
HDAC4-215ENST00000543185 CRYBG3Q68DQ2 2970 aa10.94□□□□□ -0.66
HDAC4-215ENST00000543185 KRTAP10-2P60368 255 aa10.92□□□□□ -0.66
HDAC4-215ENST00000543185 ZANQ9Y493 2812 aa10.91□□□□□ -0.66
HDAC4-215ENST00000543185 DCHS2Q6V1P9 2916 aa10.9□□□□□ -0.66
HDAC4-215ENST00000543185 C10orf95Q9H7T3 257 aa10.88□□□□□ -0.67
HDAC4-215ENST00000543185 USP34Q70CQ2 3546 aa10.85□□□□□ -0.67
HDAC4-215ENST00000543185 LAMA1P25391 3075 aa10.8□□□□□ -0.68
HDAC4-215ENST00000543185 KRTAP13-1Q8IUC0 172 aa10.8□□□□□ -0.68
HDAC4-215ENST00000543185 Q6ZRN7 208 aaPredicted RBP10.79□□□□□ -0.68
HDAC4-215ENST00000543185 LAMA3Q16787 3333 aa10.77□□□□□ -0.68
HDAC4-215ENST00000543185 CELSR3Q9NYQ7 3312 aa10.76□□□□□ -0.69
HDAC4-215ENST00000543185 REV3LO60673 3130 aa10.76□□□□□ -0.69
HDAC4-215ENST00000543185 UNC80Q8N2C7 3258 aa10.74□□□□□ -0.69
HDAC4-215ENST00000543185 BOD1L1Q8NFC6 3051 aa10.73□□□□□ -0.69
HDAC4-215ENST00000543185 HTTP42858 3142 aa10.71□□□□□ -0.69
HDAC4-215ENST00000543185 FBN2P35556 2912 aa10.69□□□□□ -0.7
HDAC4-215ENST00000543185 ADGRG4Q8IZF6 3080 aa10.64□□□□□ -0.71
HDAC4-215ENST00000543185 COL6A3P12111 3177 aa10.63□□□□□ -0.71
HDAC4-215ENST00000543185 KRTAP13-2Q52LG2 175 aa10.62□□□□□ -0.71
HDAC4-215ENST00000543185 P0C880 135 aa10.61□□□□□ -0.71
HDAC4-215ENST00000543185 SRRM2Q9UQ35 2752 aaKnown RBP10.61□□□□□ -0.71
HDAC4-215ENST00000543185 BRCA2P51587 3418 aa10.61□□□□□ -0.71
HDAC4-215ENST00000543185 TENM4Q6N022 2769 aa10.6□□□□□ -0.71
HDAC4-215ENST00000543185 DMXL1Q9Y485 3027 aa10.6□□□□□ -0.71
HDAC4-215ENST00000543185 HRNRQ86YZ3 2850 aaPredicted RBP10.59□□□□□ -0.71
HDAC4-215ENST00000543185 DNAH14Q0VDD8 3507 aa10.59□□□□□ -0.71
HDAC4-215ENST00000543185 MXRA5Q9NR99 2828 aa10.54□□□□□ -0.72
HDAC4-215ENST00000543185 KRTAP7-1Q8IUC3 87 aa10.54□□□□□ -0.72
HDAC4-215ENST00000543185 H0YAA0 97 aa10.53□□□□□ -0.72
HDAC4-215ENST00000543185 ATMQ13315 3056 aa10.53□□□□□ -0.72
HDAC4-215ENST00000543185 VWFP04275 2813 aa10.49□□□□□ -0.73
HDAC4-215ENST00000543185 CELSR1Q9NYQ6 3014 aa10.46□□□□□ -0.74
HDAC4-215ENST00000543185 PKD1L1Q8TDX9 2849 aa10.38□□□□□ -0.75
HDAC4-215ENST00000543185 VCANP13611 3396 aa10.37□□□□□ -0.75
HDAC4-215ENST00000543185 CDH23Q9H251 3354 aa10.37□□□□□ -0.75
HDAC4-215ENST00000543185 PRO2289Q9P1D8 64 aa10.32□□□□□ -0.76
HDAC4-215ENST00000543185 KRTAP10-8P60410 259 aa10.23□□□□□ -0.77
HDAC4-215ENST00000543185 CFAP47Q6ZTR5 3102 aa10.18□□□□□ -0.78
HDAC4-215ENST00000543185 XP32Q5T750 250 aa10.18□□□□□ -0.78
HDAC4-215ENST00000543185 TPRXLQ17RH7 258 aa10.15□□□□□ -0.79
HDAC4-215ENST00000543185 TENM2Q9NT68 2774 aa10.11□□□□□ -0.79
HDAC4-215ENST00000543185 COL7A1Q02388 2944 aa10.09□□□□□ -0.79
HDAC4-215ENST00000543185 SPTBN5Q9NRC6 3674 aaKnown RBP10.07□□□□□ -0.8
HDAC4-215ENST00000543185 KRTAP1-4P0C5Y4 121 aa10.03□□□□□ -0.8
HDAC4-215ENST00000543185 SPEGQ15772 3267 aa9.98□□□□□ -0.81
HDAC4-215ENST00000543185 MYO15AQ9UKN7 3530 aa9.91□□□□□ -0.82
HDAC4-215ENST00000543185 EYSQ5T1H1 3165 aa9.88□□□□□ -0.83
HDAC4-215ENST00000543185 KRTAP13-4Q3LI77 160 aa9.87□□□□□ -0.83
HDAC4-215ENST00000543185 KRTAP21-3Q3LHN1 58 aa9.86□□□□□ -0.83
HDAC4-215ENST00000543185 MEGF8Q7Z7M0 2845 aa9.85□□□□□ -0.83
HDAC4-215ENST00000543185 SZT2Q5T011 3432 aa9.82□□□□□ -0.84
HDAC4-215ENST00000543185 WDFY3Q8IZQ1 3526 aa9.82□□□□□ -0.84
HDAC4-215ENST00000543185 ZFHX3Q15911 3703 aa9.82□□□□□ -0.84
HDAC4-215ENST00000543185 KRTAP13-3Q3SY46 172 aa9.82□□□□□ -0.84
HDAC4-215ENST00000543185 KRTAP10-10P60014 251 aa9.75□□□□□ -0.85
HDAC4-215ENST00000543185 NBPF19A0A087WUL8 3843 aa9.75□□□□□ -0.85
HDAC4-215ENST00000543185 KRTAP12-2P59991 146 aa9.72□□□□□ -0.85
HDAC4-215ENST00000543185 FBN1P35555 2871 aaKnown RBP9.69□□□□□ -0.86
HDAC4-215ENST00000543185 INE1O15225 51 aa9.68□□□□□ -0.86
HDAC4-215ENST00000543185 FBN3Q75N90 2809 aa9.62□□□□□ -0.87
HDAC4-215ENST00000543185 A0A1B0GVY2 172 aa9.61□□□□□ -0.87
HDAC4-215ENST00000543185 LOC400499M0QZD8 3231 aa9.58□□□□□ -0.88
HDAC4-215ENST00000543185 ZFHX4Q86UP3 3567 aa9.57□□□□□ -0.88
HDAC4-215ENST00000543185 KRTAP12-1P59990 96 aa9.56□□□□□ -0.88
HDAC4-215ENST00000543185 LAMA5O15230 3695 aa9.53□□□□□ -0.88
HDAC4-215ENST00000543185 SPENQ96T58 3664 aaKnown RBP9.53□□□□□ -0.88
HDAC4-215ENST00000543185 SMG1Q96Q15 3661 aaKnown RBP9.5□□□□□ -0.89
HDAC4-215ENST00000543185 ASPMQ8IZT6 3477 aa9.46□□□□□ -0.9
HDAC4-215ENST00000543185 RELNP78509 3460 aa9.42□□□□□ -0.9
HDAC4-215ENST00000543185 DMDP11532 3685 aa9.37□□□□□ -0.91
HDAC4-215ENST00000543185 OTOGQ6ZRI0 2925 aa9.36□□□□□ -0.91
HDAC4-215ENST00000543185 KRTAP15-1Q3LI76 137 aa9.31□□□□□ -0.92
HDAC4-215ENST00000543185 VPS13CQ709C8 3753 aa9.18□□□□□ -0.94
HDAC4-215ENST00000543185 DCHS1Q96JQ0 3298 aa9.18□□□□□ -0.94
HDAC4-215ENST00000543185 CSMD1Q96PZ7 3565 aa9.17□□□□□ -0.94
HDAC4-215ENST00000543185 TRRAPQ9Y4A5 3859 aa9.17□□□□□ -0.94
HDAC4-215ENST00000543185 AKAP9Q99996 3911 aa9.09□□□□□ -0.95
HDAC4-215ENST00000543185 KRTAP10-6P60371 365 aaPredicted RBP9.06□□□□□ -0.96
HDAC4-215ENST00000543185 KRTAP3-1Q9BYR8 98 aa9.06□□□□□ -0.96
HDAC4-215ENST00000543185 KRTAP23-1A1A580 65 aa9.04□□□□□ -0.96
HDAC4-215ENST00000543185 KRTAP10-12P60413 245 aa8.84□□□□□ -0.99
HDAC4-215ENST00000543185 SVEP1Q4LDE5 3571 aa8.84□□□□□ -0.99
HDAC4-215ENST00000543185 CUBNO60494 3623 aa8.75□□□□□ -1.01
HDAC4-215ENST00000543185 MUC3AQ02505 3323 aa8.71□□□□□ -1.02
HDAC4-215ENST00000543185 CSMD3Q7Z407 3707 aa8.64□□□□□ -1.03
HDAC4-215ENST00000543185 KRTAP3-2Q9BYR7 98 aa8.62□□□□□ -1.03
HDAC4-215ENST00000543185 ALMS1Q8TCU4 4167 aa8.6□□□□□ -1.03
HDAC4-215ENST00000543185 KRTAP12-3P60328 96 aa8.58□□□□□ -1.04
HDAC4-215ENST00000543185 KRTAP3-3Q9BYR6 98 aa8.55□□□□□ -1.04
HDAC4-215ENST00000543185 BSNQ9UPA5 3926 aa8.44□□□□□ -1.06
HDAC4-215ENST00000543185 CSMD2Q7Z408 3487 aa8.32□□□□□ -1.08
HDAC4-215ENST00000543185 LYSTQ99698 3801 aa8.28□□□□□ -1.08
HDAC4-215ENST00000543185 CRCT1Q9UGL9 99 aa8.22□□□□□ -1.09
HDAC4-215ENST00000543185 LCE3AQ5TA76 89 aa8.21□□□□□ -1.09
HDAC4-215ENST00000543185 CMYA5Q8N3K9 4069 aa8.16□□□□□ -1.1
HDAC4-215ENST00000543185 MT1HL1P0DM35 61 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms