RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ETDBQ3ZM63 59 aa6.53□□□□□ -1.36
YBX3-213ENST00000542641 C1orf195Q5TG92 126 aa6.53□□□□□ -1.36
YBX3-213ENST00000542641 FP248Q71RG6 208 aaPredicted RBP6.53□□□□□ -1.36
YBX3-213ENST00000542641 HMCN2Q8NDA2 5059 aa6.51□□□□□ -1.37
YBX3-213ENST00000542641 A0A1B0GW54 56 aa6.51□□□□□ -1.37
YBX3-213ENST00000542641 KRTAP9-7A8MTY7 169 aa6.49□□□□□ -1.37
YBX3-213ENST00000542641 Q96NJ1 140 aa6.46□□□□□ -1.38
YBX3-213ENST00000542641 DEFB116Q30KQ4 102 aa6.45□□□□□ -1.38
YBX3-213ENST00000542641 LCE1DQ5T752 114 aa6.45□□□□□ -1.38
YBX3-213ENST00000542641 LINC00472Q9H8W2 130 aa6.45□□□□□ -1.38
YBX3-213ENST00000542641 IGKV4-1P06312 121 aa6.44□□□□□ -1.38
YBX3-213ENST00000542641 NREPQ16612 68 aa6.44□□□□□ -1.38
YBX3-213ENST00000542641 TPRXLQ17RH7 258 aa6.44□□□□□ -1.38
YBX3-213ENST00000542641 KRTAP13-3Q3SY46 172 aa6.43□□□□□ -1.38
YBX3-213ENST00000542641 SIGMAR1Q99720 223 aa6.43□□□□□ -1.38
YBX3-213ENST00000542641 LPAP08519 4548 aa6.43□□□□□ -1.38
YBX3-213ENST00000542641 C9orf92A6NGG3 77 aa6.4□□□□□ -1.38
YBX3-213ENST00000542641 J3KT08 172 aa6.4□□□□□ -1.38
YBX3-213ENST00000542641 LINC00846Q9NV44 126 aa6.4□□□□□ -1.38
YBX3-213ENST00000542641 Q6ZVQ6 151 aa6.38□□□□□ -1.39
YBX3-213ENST00000542641 UBL5Q9BZL1 73 aa6.38□□□□□ -1.39
YBX3-213ENST00000542641 LRP2P98164 4655 aa6.37□□□□□ -1.39
YBX3-213ENST00000542641 KRTAP3-1Q9BYR8 98 aa6.37□□□□□ -1.39
YBX3-213ENST00000542641 BPY2O14599 106 aa6.35□□□□□ -1.39
YBX3-213ENST00000542641 NDUFB1O75438 58 aa6.35□□□□□ -1.39
YBX3-213ENST00000542641 ACYP1P07311 99 aa6.35□□□□□ -1.39
YBX3-213ENST00000542641 IGHV6-1A0A0B4J1U7 121 aa6.34□□□□□ -1.39
YBX3-213ENST00000542641 A8MWP4 228 aa6.34□□□□□ -1.39
YBX3-213ENST00000542641 FAM240AA0A1B0GVK7 77 aa6.33□□□□□ -1.4
YBX3-213ENST00000542641 A0A1B0GVX0 72 aa6.33□□□□□ -1.4
YBX3-213ENST00000542641 DSCR10P59022 87 aa6.33□□□□□ -1.4
YBX3-213ENST00000542641 LINC00313P59037 77 aa6.33□□□□□ -1.4
YBX3-213ENST00000542641 IGKV3D-7A0A0C4DH55 119 aa6.31□□□□□ -1.4
YBX3-213ENST00000542641 J3QR89 54 aa6.31□□□□□ -1.4
YBX3-213ENST00000542641 C8orf87E5RJ46 101 aa6.3□□□□□ -1.4
YBX3-213ENST00000542641 PRR15Q8IV56 129 aa6.3□□□□□ -1.4
YBX3-213ENST00000542641 NOTCH2NLQ7Z3S9 236 aa6.29□□□□□ -1.4
YBX3-213ENST00000542641 KRTAP4-7Q9BYR0 210 aa6.29□□□□□ -1.4
YBX3-213ENST00000542641 K7EQZ3 153 aa6.28□□□□□ -1.4
YBX3-213ENST00000542641 Q8N9L7 120 aa6.27□□□□□ -1.41
YBX3-213ENST00000542641 UBR4Q5T4S7 5183 aa6.27□□□□□ -1.41
YBX3-213ENST00000542641 CXCL6P80162 114 aa6.26□□□□□ -1.41
YBX3-213ENST00000542641 C8orf17Q9NRJ1 99 aa6.26□□□□□ -1.41
YBX3-213ENST00000542641 KRTAP16-1A8MUX0 517 aa6.25□□□□□ -1.41
YBX3-213ENST00000542641 SEC61BP60468 96 aaKnown RBP6.25□□□□□ -1.41
YBX3-213ENST00000542641 RPL37P61927 97 aaKnown RBP6.25□□□□□ -1.41
YBX3-213ENST00000542641 KRTAP9-3Q9BYQ3 159 aa6.25□□□□□ -1.41
YBX3-213ENST00000542641 Q75L30 129 aa6.24□□□□□ -1.41
YBX3-213ENST00000542641 C20orf166-AS1Q96NR2 134 aa6.24□□□□□ -1.41
YBX3-213ENST00000542641 A8MUU9 505 aa6.23□□□□□ -1.41
YBX3-213ENST00000542641 MMP24-AS1A0A0U1RRL7 71 aa6.22□□□□□ -1.41
YBX3-213ENST00000542641 KRTAP23-1A1A580 65 aa6.22□□□□□ -1.41
YBX3-213ENST00000542641 K7ERU9 68 aa6.22□□□□□ -1.41
YBX3-213ENST00000542641 ATP5EP2Q5VTU8 51 aa6.22□□□□□ -1.41
YBX3-213ENST00000542641 LINC00643Q86TS7 51 aa6.22□□□□□ -1.41
YBX3-213ENST00000542641 KRTAP4-9Q9BYQ8 210 aa6.22□□□□□ -1.41
YBX3-213ENST00000542641 MUC17Q685J3 4493 aa6.22□□□□□ -1.41
YBX3-213ENST00000542641 hDV103S1A0JD37 113 aa6.2□□□□□ -1.42
YBX3-213ENST00000542641 PCOTHQ58A44 107 aa6.2□□□□□ -1.42
YBX3-213ENST00000542641 ATP11AUNQ6ZP68 121 aa6.2□□□□□ -1.42
YBX3-213ENST00000542641 LCE5AQ5TCM9 118 aa6.19□□□□□ -1.42
YBX3-213ENST00000542641 TMEM254Q8TBM7 123 aa6.19□□□□□ -1.42
YBX3-213ENST00000542641 CASC2Q6XLA1 102 aa6.18□□□□□ -1.42
YBX3-213ENST00000542641 WFDC13Q8IUB5 93 aa6.18□□□□□ -1.42
YBX3-213ENST00000542641 MRPL34Q9BQ48 92 aaKnown RBP6.18□□□□□ -1.42
YBX3-213ENST00000542641 HCG22E2RYF7 251 aa6.17□□□□□ -1.42
YBX3-213ENST00000542641 Q8N9P0 234 aaPredicted RBP6.17□□□□□ -1.42
YBX3-213ENST00000542641 RNF213Q63HN8 5207 aa6.16□□□□□ -1.42
YBX3-213ENST00000542641 HIST1H4AP62805 103 aaKnown RBP6.16□□□□□ -1.42
YBX3-213ENST00000542641 NDUFS5O43920 106 aa6.14□□□□□ -1.43
YBX3-213ENST00000542641 MUC2Q02817 5179 aa6.12□□□□□ -1.43
YBX3-213ENST00000542641 ZCCHC13Q8WW36 166 aaKnown RBP6.1□□□□□ -1.43
YBX3-213ENST00000542641 KRTAP4-1Q9BYQ7 146 aa6.1□□□□□ -1.43
YBX3-213ENST00000542641 A0A087WVE0 104 aa6.09□□□□□ -1.43
YBX3-213ENST00000542641 MT-ATP8P03928 68 aa6.06□□□□□ -1.44
YBX3-213ENST00000542641 KRTAP4-11Q9BYQ6 195 aa6.05□□□□□ -1.44
YBX3-213ENST00000542641 TP53AIP1Q9HCN2 124 aa6.04□□□□□ -1.44
YBX3-213ENST00000542641 IMUPQ9GZP8 106 aa6.03□□□□□ -1.44
YBX3-213ENST00000542641 Q5W150 140 aa6.02□□□□□ -1.45
YBX3-213ENST00000542641 SPINK7P58062 85 aa6□□□□□ -1.45
YBX3-213ENST00000542641 KRTAP4-2Q9BYR5 136 aa6□□□□□ -1.45
YBX3-213ENST00000542641 A0A0U1RQV1 116 aa5.99□□□□□ -1.45
YBX3-213ENST00000542641 SCGB1A1P11684 91 aa5.98□□□□□ -1.45
YBX3-213ENST00000542641 IGKV2D-30A0A075B6S6 120 aa5.96□□□□□ -1.46
YBX3-213ENST00000542641 UQCRQO14949 82 aa5.96□□□□□ -1.46
YBX3-213ENST00000542641 IGKV2-30P06310 120 aa5.96□□□□□ -1.46
YBX3-213ENST00000542641 TRAV22A0A0B4J277 110 aa5.94□□□□□ -1.46
YBX3-213ENST00000542641 OCR1Q9BZK8 76 aa5.94□□□□□ -1.46
YBX3-213ENST00000542641 HRES1P13985 223 aa5.93□□□□□ -1.46
YBX3-213ENST00000542641 C7orf65Q6ZTY9 151 aa5.93□□□□□ -1.46
YBX3-213ENST00000542641 FAM236AA0A1B0GUQ0 79 aa5.92□□□□□ -1.46
YBX3-213ENST00000542641 FAM236BA0A1B0GV22 79 aa5.92□□□□□ -1.46
YBX3-213ENST00000542641 KRTAP19-2Q3LHN2 52 aa5.91□□□□□ -1.46
YBX3-213ENST00000542641 COX6B2Q6YFQ2 88 aa5.91□□□□□ -1.46
YBX3-213ENST00000542641 FAT4Q6V0I7 4981 aa5.9□□□□□ -1.46
YBX3-213ENST00000542641 H0Y9P7 68 aa5.9□□□□□ -1.46
YBX3-213ENST00000542641 RBM12B-AS1Q9P1G2 102 aa5.9□□□□□ -1.46
YBX3-213ENST00000542641 ATOX1O00244 68 aa5.89□□□□□ -1.47
YBX3-213ENST00000542641 MPLKIPQ8TAP9 179 aa5.89□□□□□ -1.47
YBX3-213ENST00000542641 FAM236DA0A1B0GTK5 79 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms