RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 TNRC18O15417 2968 aaPredicted RBP0.88□□□□□ -2.27
PRKDC-209ENST00000540819 UBR5O95071 2799 aaPredicted RBP0.87□□□□□ -2.27
PRKDC-209ENST00000540819 C9orf92A6NGG3 77 aa0.86□□□□□ -2.27
PRKDC-209ENST00000540819 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
PRKDC-209ENST00000540819 ITPR3Q14573 2671 aa0.86□□□□□ -2.27
PRKDC-209ENST00000540819 ANKRD11Q6UB99 2663 aaPredicted RBP0.86□□□□□ -2.27
PRKDC-209ENST00000540819 SRCAPQ6ZRS2 3230 aa0.85□□□□□ -2.27
PRKDC-209ENST00000540819 LRRK2Q5S007 2527 aa0.85□□□□□ -2.27
PRKDC-209ENST00000540819 FLNBO75369 2602 aaKnown RBP0.85□□□□□ -2.27
PRKDC-209ENST00000540819 DUOX1Q9NRD9 1551 aa0.85□□□□□ -2.27
PRKDC-209ENST00000540819 SPRR2DP22532 72 aa0.84□□□□□ -2.27
PRKDC-209ENST00000540819 SNRPGP62308 76 aaKnown RBP0.84□□□□□ -2.27
PRKDC-209ENST00000540819 UBR4Q5T4S7 5183 aa0.84□□□□□ -2.28
PRKDC-209ENST00000540819 HUWE1Q7Z6Z7 4374 aaKnown RBP0.83□□□□□ -2.28
PRKDC-209ENST00000540819 A0A0C4DFX4 3053 aa0.83□□□□□ -2.28
PRKDC-209ENST00000540819 MACF1Q9UPN3 7388 aaKnown RBP0.83□□□□□ -2.28
PRKDC-209ENST00000540819 M0QY20 66 aa0.83□□□□□ -2.28
PRKDC-209ENST00000540819 MYO9AB2RTY4 2548 aa0.82□□□□□ -2.28
PRKDC-209ENST00000540819 MYO18BQ8IUG5 2567 aa0.82□□□□□ -2.28
PRKDC-209ENST00000540819 A8MTW9 85 aa0.82□□□□□ -2.28
PRKDC-209ENST00000540819 DOPEY1Q5JWR5 2465 aa0.81□□□□□ -2.28
PRKDC-209ENST00000540819 EPG5Q9HCE0 2579 aa0.81□□□□□ -2.28
PRKDC-209ENST00000540819 AHNAK2Q8IVF2 5795 aa0.81□□□□□ -2.28
PRKDC-209ENST00000540819 MROH2BQ7Z745 1585 aa0.81□□□□□ -2.28
PRKDC-209ENST00000540819 SYNE1Q8NF91 8797 aaKnown RBP0.81□□□□□ -2.28
PRKDC-209ENST00000540819 LYSTQ99698 3801 aa0.81□□□□□ -2.28
PRKDC-209ENST00000540819 SPTBN4Q9H254 2564 aa0.8□□□□□ -2.28
PRKDC-209ENST00000540819 COL6A5A8TX70 2615 aa0.8□□□□□ -2.28
PRKDC-209ENST00000540819 IGSF10Q6WRI0 2623 aa0.8□□□□□ -2.28
PRKDC-209ENST00000540819 NBEAL2Q6ZNJ1 2754 aa0.79□□□□□ -2.28
PRKDC-209ENST00000540819 AHNAKQ09666 5890 aaKnown RBP0.78□□□□□ -2.28
PRKDC-209ENST00000540819 CCDC168Q8NDH2 2452 aa0.78□□□□□ -2.28
PRKDC-209ENST00000540819 FASNP49327 2511 aaKnown RBP0.78□□□□□ -2.28
PRKDC-209ENST00000540819 SRRM2Q9UQ35 2752 aaKnown RBP0.78□□□□□ -2.29
PRKDC-209ENST00000540819 GCC2Q8IWJ2 1684 aa0.78□□□□□ -2.29
PRKDC-209ENST00000540819 USP9YO00507 2555 aaPredicted RBP0.76□□□□□ -2.29
PRKDC-209ENST00000540819 H3BNG1 76 aa0.76□□□□□ -2.29
PRKDC-209ENST00000540819 CEP350Q5VT06 3117 aa0.76□□□□□ -2.29
PRKDC-209ENST00000540819 KALRNO60229 2985 aa0.76□□□□□ -2.29
PRKDC-209ENST00000540819 LRP1Q07954 4544 aaKnown RBP0.76□□□□□ -2.29
PRKDC-209ENST00000540819 GCN1Q92616 2671 aaKnown RBP0.75□□□□□ -2.29
PRKDC-209ENST00000540819 TENM3Q9P273 2699 aa0.75□□□□□ -2.29
PRKDC-209ENST00000540819 FLNAP21333 2647 aaKnown RBP0.75□□□□□ -2.29
PRKDC-209ENST00000540819 KIAA1109Q2LD37 5005 aa0.75□□□□□ -2.29
PRKDC-209ENST00000540819 SPRR2BP35325 72 aa0.75□□□□□ -2.29
PRKDC-209ENST00000540819 ACACAQ13085 2346 aa0.75□□□□□ -2.29
PRKDC-209ENST00000540819 FLNCQ14315 2725 aa0.74□□□□□ -2.29
PRKDC-209ENST00000540819 M0QZ58 72 aa0.74□□□□□ -2.29
PRKDC-209ENST00000540819 PCLOQ9Y6V0 5065 aa0.74□□□□□ -2.29
PRKDC-209ENST00000540819 SYNE2Q8WXH0 6885 aaKnown RBP0.73□□□□□ -2.29
PRKDC-209ENST00000540819 MUC2Q02817 5179 aa0.73□□□□□ -2.29
PRKDC-209ENST00000540819 HRNRQ86YZ3 2850 aaPredicted RBP0.73□□□□□ -2.29
PRKDC-209ENST00000540819 WDFY4Q6ZS81 3184 aa0.73□□□□□ -2.29
PRKDC-209ENST00000540819 KMT2AQ03164 3969 aa0.73□□□□□ -2.29
PRKDC-209ENST00000540819 NF1P21359 2839 aa0.73□□□□□ -2.29
PRKDC-209ENST00000540819 MTORP42345 2549 aa0.72□□□□□ -2.29
PRKDC-209ENST00000540819 SONP18583 2426 aaKnown RBP0.72□□□□□ -2.29
PRKDC-209ENST00000540819 FSIP2Q5CZC0 6907 aa0.72□□□□□ -2.29
PRKDC-209ENST00000540819 MYCBP2O75592 4640 aa0.72□□□□□ -2.29
PRKDC-209ENST00000540819 NSD1Q96L73 2696 aaPredicted RBP0.71□□□□□ -2.29
PRKDC-209ENST00000540819 PDZD2O15018 2839 aa0.71□□□□□ -2.3
PRKDC-209ENST00000540819 NEBP20929 6669 aa0.71□□□□□ -2.3
PRKDC-209ENST00000540819 TENM2Q9NT68 2774 aa0.69□□□□□ -2.3
PRKDC-209ENST00000540819 CEP295Q9C0D2 2601 aa0.69□□□□□ -2.3
PRKDC-209ENST00000540819 VPS13BQ7Z7G8 4022 aa0.69□□□□□ -2.3
PRKDC-209ENST00000540819 ZZEF1O43149 2961 aa0.69□□□□□ -2.3
PRKDC-209ENST00000540819 DSTQ03001 7570 aaKnown RBP0.68□□□□□ -2.3
PRKDC-209ENST00000540819 TNP1P09430 55 aa0.68□□□□□ -2.3
PRKDC-209ENST00000540819 CFAP46Q8IYW2 2715 aa0.68□□□□□ -2.3
PRKDC-209ENST00000540819 NBEAL1Q6ZS30 2694 aa0.68□□□□□ -2.3
PRKDC-209ENST00000540819 POLR2KP53803 58 aaKnown RBP0.67□□□□□ -2.3
PRKDC-209ENST00000540819 CLPSL2Q6UWE3 100 aa0.67□□□□□ -2.3
PRKDC-209ENST00000540819 LPAP08519 4548 aa0.67□□□□□ -2.3
PRKDC-209ENST00000540819 SPG11Q96JI7 2443 aa0.67□□□□□ -2.3
PRKDC-209ENST00000540819 UTP20O75691 2785 aaKnown RBP0.67□□□□□ -2.3
PRKDC-209ENST00000540819 FAM186AA6NE01 2351 aa0.67□□□□□ -2.3
PRKDC-209ENST00000540819 ACACBO00763 2458 aa0.66□□□□□ -2.3
PRKDC-209ENST00000540819 STAB2Q8WWQ8 2551 aa0.66□□□□□ -2.3
PRKDC-209ENST00000540819 DMBT1Q9UGM3 2413 aaPredicted RBP0.66□□□□□ -2.3
PRKDC-209ENST00000540819 CELSR3Q9NYQ7 3312 aa0.66□□□□□ -2.3
PRKDC-209ENST00000540819 RIF1Q5UIP0 2472 aaKnown RBP0.66□□□□□ -2.3
PRKDC-209ENST00000540819 DCHS2Q6V1P9 2916 aa0.66□□□□□ -2.3
PRKDC-209ENST00000540819 PCNTO95613 3336 aa0.66□□□□□ -2.3
PRKDC-209ENST00000540819 ITPR1Q14643 2758 aa0.64□□□□□ -2.31
PRKDC-209ENST00000540819 MUC5BQ9HC84 5762 aaPredicted RBP0.64□□□□□ -2.31
PRKDC-209ENST00000540819 RYR1P21817 5038 aa0.63□□□□□ -2.31
PRKDC-209ENST00000540819 MXRA5Q9NR99 2828 aa0.63□□□□□ -2.31
PRKDC-209ENST00000540819 SPTAN1Q13813 2472 aaKnown RBP0.62□□□□□ -2.31
PRKDC-209ENST00000540819 CEP250Q9BV73 2442 aa0.62□□□□□ -2.31
PRKDC-209ENST00000540819 RPL39P62891 51 aaKnown RBP0.62□□□□□ -2.31
PRKDC-209ENST00000540819 TLN2Q9Y4G6 2542 aa0.62□□□□□ -2.31
PRKDC-209ENST00000540819 COL7A1Q02388 2944 aa0.61□□□□□ -2.31
PRKDC-209ENST00000540819 ZANQ9Y493 2812 aa0.61□□□□□ -2.31
PRKDC-209ENST00000540819 HIVEP1P15822 2718 aa0.61□□□□□ -2.31
PRKDC-209ENST00000540819 CUBNO60494 3623 aa0.61□□□□□ -2.31
PRKDC-209ENST00000540819 LAMA2P24043 3122 aaKnown RBP0.61□□□□□ -2.31
PRKDC-209ENST00000540819 DEFB110Q30KQ9 67 aa0.61□□□□□ -2.31
PRKDC-209ENST00000540819 KMT2CQ8NEZ4 4911 aaKnown RBP0.61□□□□□ -2.31
PRKDC-209ENST00000540819 RYR2Q92736 4967 aa0.61□□□□□ -2.31
PRKDC-209ENST00000540819 TEX15Q9BXT5 2789 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms