RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 A6NJY4 79 aa6.54□□□□□ -1.36
SS18-204ENST00000539244 CCKP06307 115 aa6.54□□□□□ -1.36
SS18-204ENST00000539244 ZCCHC13Q8WW36 166 aaKnown RBP6.54□□□□□ -1.36
SS18-204ENST00000539244 A8MWP4 228 aa6.53□□□□□ -1.36
SS18-204ENST00000539244 TMEM256-PLSCR3K7ERE1 68 aa6.53□□□□□ -1.36
SS18-204ENST00000539244 DNAL4O96015 105 aa6.53□□□□□ -1.36
SS18-204ENST00000539244 SPINK7P58062 85 aa6.53□□□□□ -1.36
SS18-204ENST00000539244 A0A1B0GV72 72 aa6.52□□□□□ -1.37
SS18-204ENST00000539244 FXYD2P54710 66 aa6.51□□□□□ -1.37
SS18-204ENST00000539244 SPATA45Q537H7 98 aa6.51□□□□□ -1.37
SS18-204ENST00000539244 PAM16Q9Y3D7 125 aa6.51□□□□□ -1.37
SS18-204ENST00000539244 UBE2V1Q13404 147 aa6.49□□□□□ -1.37
SS18-204ENST00000539244 KRTAP6-3Q3LI67 103 aa6.49□□□□□ -1.37
SS18-204ENST00000539244 Q8N9P0 234 aaPredicted RBP6.48□□□□□ -1.37
SS18-204ENST00000539244 J3KT08 172 aa6.46□□□□□ -1.38
SS18-204ENST00000539244 VAMP8Q9BV40 100 aa6.46□□□□□ -1.38
SS18-204ENST00000539244 COX6CP09669 75 aa6.44□□□□□ -1.38
SS18-204ENST00000539244 PSMB2P49721 201 aa6.44□□□□□ -1.38
SS18-204ENST00000539244 WFDC13Q8IUB5 93 aa6.44□□□□□ -1.38
SS18-204ENST00000539244 RBM3P98179 157 aaKnown RBP6.43□□□□□ -1.38
SS18-204ENST00000539244 C21orf62-AS1Q17RA5 79 aa6.43□□□□□ -1.38
SS18-204ENST00000539244 VPS25Q9BRG1 176 aa6.43□□□□□ -1.38
SS18-204ENST00000539244 S100A1P23297 94 aa6.42□□□□□ -1.38
SS18-204ENST00000539244 K7ERJ3 54 aa6.41□□□□□ -1.38
SS18-204ENST00000539244 DSCR8Q96T75 97 aa6.41□□□□□ -1.38
SS18-204ENST00000539244 NDUFB1O75438 58 aa6.39□□□□□ -1.39
SS18-204ENST00000539244 HSD52Q0P140 79 aa6.39□□□□□ -1.39
SS18-204ENST00000539244 Q6ZQT0 140 aa6.39□□□□□ -1.39
SS18-204ENST00000539244 C8orf17Q9NRJ1 99 aa6.38□□□□□ -1.39
SS18-204ENST00000539244 C9JAW5 83 aa6.36□□□□□ -1.39
SS18-204ENST00000539244 LYRM7Q5U5X0 104 aa6.35□□□□□ -1.39
SS18-204ENST00000539244 H1FX-AS1Q4G0G2 97 aa6.34□□□□□ -1.39
SS18-204ENST00000539244 IGKV3D-7A0A0C4DH55 119 aa6.33□□□□□ -1.4
SS18-204ENST00000539244 Q6ZVQ6 151 aa6.33□□□□□ -1.4
SS18-204ENST00000539244 A0A1B0GW54 56 aa6.32□□□□□ -1.4
SS18-204ENST00000539244 BAALC-AS2P0C853 105 aa6.31□□□□□ -1.4
SS18-204ENST00000539244 SCGB1C2P0DMR2 95 aa6.29□□□□□ -1.4
SS18-204ENST00000539244 PRR15Q8IV56 129 aa6.28□□□□□ -1.4
SS18-204ENST00000539244 NEBP20929 6669 aa6.27□□□□□ -1.41
SS18-204ENST00000539244 LOC110117498A0A087WWA1 95 aa6.27□□□□□ -1.41
SS18-204ENST00000539244 JMJD7-PLA2G4BH0Y9G9 81 aa6.26□□□□□ -1.41
SS18-204ENST00000539244 TMEM254Q8TBM7 123 aa6.26□□□□□ -1.41
SS18-204ENST00000539244 MRPL34Q9BQ48 92 aaKnown RBP6.26□□□□□ -1.41
SS18-204ENST00000539244 PYY3Q5JQD4 70 aa6.25□□□□□ -1.41
SS18-204ENST00000539244 MMP24-AS1A0A0U1RRL7 71 aa6.24□□□□□ -1.41
SS18-204ENST00000539244 PDE6GP18545 87 aa6.24□□□□□ -1.41
SS18-204ENST00000539244 UQCR10Q9UDW1 63 aa6.23□□□□□ -1.41
SS18-204ENST00000539244 MUC12Q9UKN1 5478 aa6.21□□□□□ -1.42
SS18-204ENST00000539244 hDV103S1A0JD37 113 aa6.19□□□□□ -1.42
SS18-204ENST00000539244 A6NN06 94 aa6.19□□□□□ -1.42
SS18-204ENST00000539244 ATXN8Q156A1 80 aa6.18□□□□□ -1.42
SS18-204ENST00000539244 NREPQ16612 68 aa6.18□□□□□ -1.42
SS18-204ENST00000539244 C7orf65Q6ZTY9 151 aa6.18□□□□□ -1.42
SS18-204ENST00000539244 IGKV2D-30A0A075B6S6 120 aa6.17□□□□□ -1.42
SS18-204ENST00000539244 IGKV2-30P06310 120 aa6.17□□□□□ -1.42
SS18-204ENST00000539244 MT1BP07438 61 aa6.17□□□□□ -1.42
SS18-204ENST00000539244 C14orf132Q9NPU4 83 aa6.17□□□□□ -1.42
SS18-204ENST00000539244 NDUFS5O43920 106 aa6.16□□□□□ -1.42
SS18-204ENST00000539244 K7EQZ3 153 aa6.15□□□□□ -1.42
SS18-204ENST00000539244 Q5W150 140 aa6.15□□□□□ -1.42
SS18-204ENST00000539244 KRTAP4-8Q9BYQ9 185 aa6.14□□□□□ -1.43
SS18-204ENST00000539244 KRTAP19-8Q3LI54 63 aa6.13□□□□□ -1.43
SS18-204ENST00000539244 KRTAP20-1Q3LI63 56 aa6.12□□□□□ -1.43
SS18-204ENST00000539244 Q5VV11 94 aa6.12□□□□□ -1.43
SS18-204ENST00000539244 SPRR2GQ9BYE4 73 aa6.12□□□□□ -1.43
SS18-204ENST00000539244 C4orf26Q17RF5 130 aa6.11□□□□□ -1.43
SS18-204ENST00000539244 FAM236AA0A1B0GUQ0 79 aa6.1□□□□□ -1.43
SS18-204ENST00000539244 FAM236BA0A1B0GV22 79 aa6.1□□□□□ -1.43
SS18-204ENST00000539244 KRTAP5-9P26371 169 aa6.1□□□□□ -1.43
SS18-204ENST00000539244 KRTAP10-5P60370 271 aa6.1□□□□□ -1.43
SS18-204ENST00000539244 C5orf47Q569G3 176 aa6.09□□□□□ -1.43
SS18-204ENST00000539244 NAA38Q9BRA0 125 aaKnown RBP6.09□□□□□ -1.43
SS18-204ENST00000539244 M0R143 59 aa6.05□□□□□ -1.44
SS18-204ENST00000539244 BPY2O14599 106 aa6.05□□□□□ -1.44
SS18-204ENST00000539244 KRTAP3-1Q9BYR8 98 aa6.04□□□□□ -1.44
SS18-204ENST00000539244 HCG22E2RYF7 251 aa6.03□□□□□ -1.44
SS18-204ENST00000539244 CSAG1Q6PB30 78 aa6.03□□□□□ -1.44
SS18-204ENST00000539244 CASC2Q6XLA1 102 aa6.03□□□□□ -1.44
SS18-204ENST00000539244 S4R3F8 94 aa6.03□□□□□ -1.44
SS18-204ENST00000539244 CXCL6P80162 114 aa6.02□□□□□ -1.45
SS18-204ENST00000539244 KMT2DO14686 5537 aa6□□□□□ -1.45
SS18-204ENST00000539244 LCA10Q71F78 164 aa5.99□□□□□ -1.45
SS18-204ENST00000539244 Q8N9L7 120 aa5.99□□□□□ -1.45
SS18-204ENST00000539244 MDN1Q9NU22 5596 aa5.99□□□□□ -1.45
SS18-204ENST00000539244 H3BT86 120 aa5.98□□□□□ -1.45
SS18-204ENST00000539244 KLKP1Q107X0 134 aa5.98□□□□□ -1.45
SS18-204ENST00000539244 C1orf64Q8NEQ6 169 aa5.96□□□□□ -1.46
SS18-204ENST00000539244 KRTAP2-3P0C7H8 128 aa5.9□□□□□ -1.46
SS18-204ENST00000539244 LCE3BQ5TA77 95 aa5.9□□□□□ -1.46
SS18-204ENST00000539244 KRTAP2-4Q9BYR9 128 aa5.9□□□□□ -1.46
SS18-204ENST00000539244 CRIPTQ9P021 101 aa5.9□□□□□ -1.46
SS18-204ENST00000539244 TMA7Q9Y2S6 64 aaKnown RBP5.9□□□□□ -1.46
SS18-204ENST00000539244 TSTD3H0UI37 97 aa5.87□□□□□ -1.47
SS18-204ENST00000539244 IMUPQ9GZP8 106 aa5.87□□□□□ -1.47
SS18-204ENST00000539244 C9orf118A6NHY6 69 aa5.85□□□□□ -1.47
SS18-204ENST00000539244 A0A1W2PPM0 123 aa5.83□□□□□ -1.48
SS18-204ENST00000539244 KRTAP4-12Q9BQ66 201 aa5.83□□□□□ -1.48
SS18-204ENST00000539244 TP53AIP1Q9HCN2 124 aa5.83□□□□□ -1.48
SS18-204ENST00000539244 BATFQ16520 125 aa5.82□□□□□ -1.48
SS18-204ENST00000539244 UBL5Q9BZL1 73 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms