RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 H3BPC8 53 aa11.93□□□□□ -0.5
SMPDL3A-203ENST00000539041 DYNC1H1Q14204 4646 aaKnown RBP11.93□□□□□ -0.5
SMPDL3A-203ENST00000539041 SMR3BP02814 79 aaPredicted RBP11.92□□□□□ -0.5
SMPDL3A-203ENST00000539041 MRPL34Q9BQ48 92 aaKnown RBP11.92□□□□□ -0.5
SMPDL3A-203ENST00000539041 TP53AIP1Q9HCN2 124 aa11.92□□□□□ -0.5
SMPDL3A-203ENST00000539041 NOTCH2NLQ7Z3S9 236 aa11.91□□□□□ -0.5
SMPDL3A-203ENST00000539041 LINC00208Q96KT6 92 aa11.91□□□□□ -0.5
SMPDL3A-203ENST00000539041 SERP1Q9Y6X1 66 aa11.91□□□□□ -0.5
SMPDL3A-203ENST00000539041 TYMSOSQ8TAI1 123 aa11.9□□□□□ -0.5
SMPDL3A-203ENST00000539041 LIMD2Q9BT23 127 aa11.9□□□□□ -0.51
SMPDL3A-203ENST00000539041 RYR2Q92736 4967 aa11.89□□□□□ -0.51
SMPDL3A-203ENST00000539041 OXTP01178 125 aa11.89□□□□□ -0.51
SMPDL3A-203ENST00000539041 TRAV22A0A0B4J277 110 aa11.88□□□□□ -0.51
SMPDL3A-203ENST00000539041 C1orf195Q5TG92 126 aa11.87□□□□□ -0.51
SMPDL3A-203ENST00000539041 C8orf87E5RJ46 101 aa11.87□□□□□ -0.51
SMPDL3A-203ENST00000539041 NDUFS5O43920 106 aa11.86□□□□□ -0.51
SMPDL3A-203ENST00000539041 C4orf48Q5BLP8 95 aa11.86□□□□□ -0.51
SMPDL3A-203ENST00000539041 C1orf64Q8NEQ6 169 aa11.82□□□□□ -0.52
SMPDL3A-203ENST00000539041 KRTAP10-4P60372 401 aaPredicted RBP11.81□□□□□ -0.52
SMPDL3A-203ENST00000539041 APOBP04114 4563 aaKnown RBP11.81□□□□□ -0.52
SMPDL3A-203ENST00000539041 SPINK1P00995 79 aa11.8□□□□□ -0.52
SMPDL3A-203ENST00000539041 PRR26Q8N8Z3 221 aa11.8□□□□□ -0.52
SMPDL3A-203ENST00000539041 LINC00313P59037 77 aa11.77□□□□□ -0.53
SMPDL3A-203ENST00000539041 LINC00304Q8N9R0 145 aa11.76□□□□□ -0.53
SMPDL3A-203ENST00000539041 RPS29P62273 56 aaKnown RBP11.73□□□□□ -0.53
SMPDL3A-203ENST00000539041 SPAG11AQ6PDA7 123 aa11.73□□□□□ -0.53
SMPDL3A-203ENST00000539041 CYP4F30PQ9H0H9 118 aa11.72□□□□□ -0.53
SMPDL3A-203ENST00000539041 SPANXA2-OT1Q8N9U9 137 aa11.69□□□□□ -0.54
SMPDL3A-203ENST00000539041 KMT2CQ8NEZ4 4911 aaKnown RBP11.69□□□□□ -0.54
SMPDL3A-203ENST00000539041 PRR4Q16378 134 aa11.67□□□□□ -0.54
SMPDL3A-203ENST00000539041 SMIM26A0A096LP01 95 aa11.65□□□□□ -0.54
SMPDL3A-203ENST00000539041 Q8N9P0 234 aaPredicted RBP11.65□□□□□ -0.54
SMPDL3A-203ENST00000539041 KRTAP16-1A8MUX0 517 aa11.64□□□□□ -0.55
SMPDL3A-203ENST00000539041 KRTAP13-3Q3SY46 172 aa11.64□□□□□ -0.55
SMPDL3A-203ENST00000539041 Q5W150 140 aa11.64□□□□□ -0.55
SMPDL3A-203ENST00000539041 PKHD1L1Q86WI1 4243 aa11.62□□□□□ -0.55
SMPDL3A-203ENST00000539041 FAT1Q14517 4588 aa11.62□□□□□ -0.55
SMPDL3A-203ENST00000539041 PCOTHQ58A44 107 aa11.62□□□□□ -0.55
SMPDL3A-203ENST00000539041 LOC101927531A0A1B0GV80 90 aa11.6□□□□□ -0.55
SMPDL3A-203ENST00000539041 FAM229AH3BQW9 127 aa11.6□□□□□ -0.55
SMPDL3A-203ENST00000539041 IGLV7-46A0A075B6I9 117 aa11.56□□□□□ -0.56
SMPDL3A-203ENST00000539041 FP248Q71RG6 208 aaPredicted RBP11.55□□□□□ -0.56
SMPDL3A-203ENST00000539041 Q5VSD8 79 aa11.5□□□□□ -0.57
SMPDL3A-203ENST00000539041 RETNLBQ9BQ08 111 aa11.49□□□□□ -0.57
SMPDL3A-203ENST00000539041 C4orf26Q17RF5 130 aa11.49□□□□□ -0.57
SMPDL3A-203ENST00000539041 IGKV2-30P06310 120 aa11.43□□□□□ -0.58
SMPDL3A-203ENST00000539041 RYR3Q15413 4870 aa11.41□□□□□ -0.58
SMPDL3A-203ENST00000539041 HSPG2P98160 4391 aa11.4□□□□□ -0.58
SMPDL3A-203ENST00000539041 MPLKIPQ8TAP9 179 aa11.4□□□□□ -0.58
SMPDL3A-203ENST00000539041 COA5Q86WW8 74 aa11.39□□□□□ -0.59
SMPDL3A-203ENST00000539041 KRTAP10-8P60410 259 aa11.36□□□□□ -0.59
SMPDL3A-203ENST00000539041 HRES1P13985 223 aa11.34□□□□□ -0.59
SMPDL3A-203ENST00000539041 Q8N1X5 172 aa11.34□□□□□ -0.59
SMPDL3A-203ENST00000539041 C9orf92A6NGG3 77 aa11.33□□□□□ -0.59
SMPDL3A-203ENST00000539041 FLG2Q5D862 2391 aaPredicted RBP11.33□□□□□ -0.6
SMPDL3A-203ENST00000539041 Q1T7F1 81 aa11.32□□□□□ -0.6
SMPDL3A-203ENST00000539041 IGKV2D-30A0A075B6S6 120 aa11.3□□□□□ -0.6
SMPDL3A-203ENST00000539041 RYR1P21817 5038 aa11.3□□□□□ -0.6
SMPDL3A-203ENST00000539041 A8MUU9 505 aa11.28□□□□□ -0.6
SMPDL3A-203ENST00000539041 C20orf166-AS1Q96NR2 134 aa11.28□□□□□ -0.6
SMPDL3A-203ENST00000539041 KRTAP17-1Q9BYP8 105 aa11.28□□□□□ -0.6
SMPDL3A-203ENST00000539041 V9GYY9 64 aa11.25□□□□□ -0.61
SMPDL3A-203ENST00000539041 TNXBP22105 4242 aa11.25□□□□□ -0.61
SMPDL3A-203ENST00000539041 DMAC1Q96GE9 116 aa11.23□□□□□ -0.61
SMPDL3A-203ENST00000539041 ACYP2P14621 99 aa11.23□□□□□ -0.61
SMPDL3A-203ENST00000539041 C7orf65Q6ZTY9 151 aa11.21□□□□□ -0.61
SMPDL3A-203ENST00000539041 LRP1Q07954 4544 aaKnown RBP11.19□□□□□ -0.62
SMPDL3A-203ENST00000539041 FAT3Q8TDW7 4589 aa11.16□□□□□ -0.62
SMPDL3A-203ENST00000539041 Q75L30 129 aa11.13□□□□□ -0.63
SMPDL3A-203ENST00000539041 PSPHP1O15172 72 aa11.12□□□□□ -0.63
SMPDL3A-203ENST00000539041 MT1HL1P0DM35 61 aa11.1□□□□□ -0.63
SMPDL3A-203ENST00000539041 KIAA1109Q2LD37 5005 aa11.1□□□□□ -0.63
SMPDL3A-203ENST00000539041 A8MUN3 132 aa11.08□□□□□ -0.64
SMPDL3A-203ENST00000539041 CHKB-CPT1BH3BT56 60 aa11.07□□□□□ -0.64
SMPDL3A-203ENST00000539041 LINC01558Q9Y6Z2 57 aa11.05□□□□□ -0.64
SMPDL3A-203ENST00000539041 PRR15LQ9BU68 103 aa11.04□□□□□ -0.64
SMPDL3A-203ENST00000539041 Q5VV11 94 aa11.02□□□□□ -0.65
SMPDL3A-203ENST00000539041 EPPK1P58107 5090 aaKnown RBP11.01□□□□□ -0.65
SMPDL3A-203ENST00000539041 DMBT1Q9UGM3 2413 aaPredicted RBP10.99□□□□□ -0.65
SMPDL3A-203ENST00000539041 SPINK7P58062 85 aa10.98□□□□□ -0.65
SMPDL3A-203ENST00000539041 BRK1Q8WUW1 75 aa10.97□□□□□ -0.65
SMPDL3A-203ENST00000539041 RPL37P61927 97 aaKnown RBP10.95□□□□□ -0.66
SMPDL3A-203ENST00000539041 ATP11AUNQ6ZP68 121 aa10.94□□□□□ -0.66
SMPDL3A-203ENST00000539041 SVIPQ8NHG7 77 aa10.94□□□□□ -0.66
SMPDL3A-203ENST00000539041 XP32Q5T750 250 aa10.93□□□□□ -0.66
SMPDL3A-203ENST00000539041 PRO0628Q9UI54 55 aa10.91□□□□□ -0.66
SMPDL3A-203ENST00000539041 BIRC6Q9NR09 4857 aa10.9□□□□□ -0.66
SMPDL3A-203ENST00000539041 KRTAP4-5Q9BYR2 181 aa10.87□□□□□ -0.67
SMPDL3A-203ENST00000539041 MYCBP2O75592 4640 aa10.84□□□□□ -0.67
SMPDL3A-203ENST00000539041 KRTAP3-1Q9BYR8 98 aa10.82□□□□□ -0.68
SMPDL3A-203ENST00000539041 COX6B2Q6YFQ2 88 aa10.78□□□□□ -0.68
SMPDL3A-203ENST00000539041 A6NED7 52 aa10.77□□□□□ -0.69
SMPDL3A-203ENST00000539041 TPRXLQ17RH7 258 aa10.75□□□□□ -0.69
SMPDL3A-203ENST00000539041 A0A1B0GU69 56 aa10.75□□□□□ -0.69
SMPDL3A-203ENST00000539041 SPTSSBQ8NFR3 76 aa10.74□□□□□ -0.69
SMPDL3A-203ENST00000539041 A8MU10 97 aa10.65□□□□□ -0.7
SMPDL3A-203ENST00000539041 LCA10Q71F78 164 aa10.65□□□□□ -0.71
SMPDL3A-203ENST00000539041 CDC42SE1Q9NRR8 79 aa10.65□□□□□ -0.71
SMPDL3A-203ENST00000539041 J3QL48 77 aa10.58□□□□□ -0.72
SMPDL3A-203ENST00000539041 SEC61GP60059 68 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms