RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 TMEM256-PLSCR3K7ERE1 68 aa7.05□□□□□ -1.28
SYNE1-235ENST00000537033 TRACP01848 142 aa7.05□□□□□ -1.28
SYNE1-235ENST00000537033 CCKP06307 115 aa7.04□□□□□ -1.28
SYNE1-235ENST00000537033 RBM12B-AS1Q9P1G2 102 aa7.04□□□□□ -1.28
SYNE1-235ENST00000537033 KRTAP16-1A8MUX0 517 aa7.03□□□□□ -1.28
SYNE1-235ENST00000537033 ATXN8Q156A1 80 aa7.03□□□□□ -1.28
SYNE1-235ENST00000537033 KRTAP9-8Q9BYQ0 159 aa7.03□□□□□ -1.28
SYNE1-235ENST00000537033 IGHV6-1A0A0B4J1U7 121 aa7.02□□□□□ -1.29
SYNE1-235ENST00000537033 DEFB116Q30KQ4 102 aa7.02□□□□□ -1.29
SYNE1-235ENST00000537033 LINC00472Q9H8W2 130 aa7.01□□□□□ -1.29
SYNE1-235ENST00000537033 F8W1H4 67 aa7□□□□□ -1.29
SYNE1-235ENST00000537033 NOTCH2NLQ7Z3S9 236 aa6.99□□□□□ -1.29
SYNE1-235ENST00000537033 VPS25Q9BRG1 176 aa6.99□□□□□ -1.29
SYNE1-235ENST00000537033 PRO0461Q9UI25 63 aa6.98□□□□□ -1.29
SYNE1-235ENST00000537033 C8orf87E5RJ46 101 aa6.97□□□□□ -1.29
SYNE1-235ENST00000537033 C9JAW5 83 aa6.96□□□□□ -1.3
SYNE1-235ENST00000537033 HRES1P13985 223 aa6.96□□□□□ -1.3
SYNE1-235ENST00000537033 MTURNQ8N3F0 131 aa6.96□□□□□ -1.3
SYNE1-235ENST00000537033 A0A1B0GVX0 72 aa6.95□□□□□ -1.3
SYNE1-235ENST00000537033 RBM3P98179 157 aaKnown RBP6.95□□□□□ -1.3
SYNE1-235ENST00000537033 MPLKIPQ8TAP9 179 aa6.95□□□□□ -1.3
SYNE1-235ENST00000537033 DSCR8Q96T75 97 aa6.95□□□□□ -1.3
SYNE1-235ENST00000537033 MT2AP02795 61 aa6.94□□□□□ -1.3
SYNE1-235ENST00000537033 H3BT86 120 aa6.93□□□□□ -1.3
SYNE1-235ENST00000537033 SMCPP49901 116 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-235ENST00000537033 C21orf62-AS1Q17RA5 79 aa6.93□□□□□ -1.3
SYNE1-235ENST00000537033 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-235ENST00000537033 J3KT08 172 aa6.91□□□□□ -1.3
SYNE1-235ENST00000537033 ETDBQ3ZM63 59 aa6.9□□□□□ -1.3
SYNE1-235ENST00000537033 KRTAP10-10P60014 251 aa6.89□□□□□ -1.31
SYNE1-235ENST00000537033 ZCCHC13Q8WW36 166 aaKnown RBP6.89□□□□□ -1.31
SYNE1-235ENST00000537033 NDUFB1O75438 58 aa6.88□□□□□ -1.31
SYNE1-235ENST00000537033 MT1FP04733 61 aa6.88□□□□□ -1.31
SYNE1-235ENST00000537033 KRTAP9-7A8MTY7 169 aa6.87□□□□□ -1.31
SYNE1-235ENST00000537033 BAALC-AS2P0C853 105 aa6.87□□□□□ -1.31
SYNE1-235ENST00000537033 K7ERU9 68 aa6.86□□□□□ -1.31
SYNE1-235ENST00000537033 J3QR89 54 aa6.85□□□□□ -1.31
SYNE1-235ENST00000537033 SPINK7P58062 85 aa6.85□□□□□ -1.31
SYNE1-235ENST00000537033 Q6ZQT0 140 aa6.85□□□□□ -1.31
SYNE1-235ENST00000537033 KRTAP9-3Q9BYQ3 159 aa6.82□□□□□ -1.32
SYNE1-235ENST00000537033 JMJD7-PLA2G4BH0Y9G9 81 aa6.81□□□□□ -1.32
SYNE1-235ENST00000537033 LCE2BO14633 110 aa6.81□□□□□ -1.32
SYNE1-235ENST00000537033 Q8N9P0 234 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-235ENST00000537033 USH2AO75445 5202 aa6.81□□□□□ -1.32
SYNE1-235ENST00000537033 A0A1B0GW54 56 aa6.8□□□□□ -1.32
SYNE1-235ENST00000537033 A8MWP4 228 aa6.8□□□□□ -1.32
SYNE1-235ENST00000537033 WFDC13Q8IUB5 93 aa6.79□□□□□ -1.32
SYNE1-235ENST00000537033 KRTAP19-1Q8IUB9 90 aa6.79□□□□□ -1.32
SYNE1-235ENST00000537033 C8orf17Q9NRJ1 99 aa6.79□□□□□ -1.32
SYNE1-235ENST00000537033 SSPOA2VEC9 5147 aa6.78□□□□□ -1.32
SYNE1-235ENST00000537033 LOC110117498A0A087WWA1 95 aa6.77□□□□□ -1.33
SYNE1-235ENST00000537033 PDE6GP18545 87 aa6.77□□□□□ -1.33
SYNE1-235ENST00000537033 Q6ZVQ6 151 aa6.75□□□□□ -1.33
SYNE1-235ENST00000537033 LINC00846Q9NV44 126 aa6.75□□□□□ -1.33
SYNE1-235ENST00000537033 IGKV3D-7A0A0C4DH55 119 aa6.74□□□□□ -1.33
SYNE1-235ENST00000537033 C14orf132Q9NPU4 83 aa6.73□□□□□ -1.33
SYNE1-235ENST00000537033 NREPQ16612 68 aa6.71□□□□□ -1.34
SYNE1-235ENST00000537033 PRR15Q8IV56 129 aa6.71□□□□□ -1.34
SYNE1-235ENST00000537033 FAM240AA0A1B0GVK7 77 aa6.7□□□□□ -1.34
SYNE1-235ENST00000537033 ACYP1P07311 99 aa6.69□□□□□ -1.34
SYNE1-235ENST00000537033 TMEM254Q8TBM7 123 aa6.69□□□□□ -1.34
SYNE1-235ENST00000537033 MRPL34Q9BQ48 92 aaKnown RBP6.68□□□□□ -1.34
SYNE1-235ENST00000537033 FCGBPQ9Y6R7 5405 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-235ENST00000537033 MMP24-AS1A0A0U1RRL7 71 aa6.66□□□□□ -1.34
SYNE1-235ENST00000537033 NDUFS5O43920 106 aa6.66□□□□□ -1.34
SYNE1-235ENST00000537033 hDV103S1A0JD37 113 aa6.64□□□□□ -1.35
SYNE1-235ENST00000537033 H1FX-AS1Q4G0G2 97 aa6.64□□□□□ -1.35
SYNE1-235ENST00000537033 KRTAP19-6Q3LI70 58 aa6.63□□□□□ -1.35
SYNE1-235ENST00000537033 K7EQZ3 153 aa6.62□□□□□ -1.35
SYNE1-235ENST00000537033 IGKV2D-30A0A075B6S6 120 aa6.59□□□□□ -1.35
SYNE1-235ENST00000537033 IGKV2-30P06310 120 aa6.59□□□□□ -1.35
SYNE1-235ENST00000537033 C7orf65Q6ZTY9 151 aa6.58□□□□□ -1.36
SYNE1-235ENST00000537033 BPY2O14599 106 aa6.57□□□□□ -1.36
SYNE1-235ENST00000537033 LINC00643Q86TS7 51 aa6.56□□□□□ -1.36
SYNE1-235ENST00000537033 MT-ATP8P03928 68 aa6.55□□□□□ -1.36
SYNE1-235ENST00000537033 UBL5Q9BZL1 73 aa6.55□□□□□ -1.36
SYNE1-235ENST00000537033 CASC2Q6XLA1 102 aa6.52□□□□□ -1.37
SYNE1-235ENST00000537033 Q5W150 140 aa6.51□□□□□ -1.37
SYNE1-235ENST00000537033 ATP5EP2Q5VTU8 51 aa6.5□□□□□ -1.37
SYNE1-235ENST00000537033 HCG22E2RYF7 251 aa6.49□□□□□ -1.37
SYNE1-235ENST00000537033 SCGB1A1P11684 91 aa6.48□□□□□ -1.37
SYNE1-235ENST00000537033 CXCL6P80162 114 aa6.48□□□□□ -1.37
SYNE1-235ENST00000537033 Q8N9L7 120 aa6.48□□□□□ -1.37
SYNE1-235ENST00000537033 IMUPQ9GZP8 106 aa6.48□□□□□ -1.37
SYNE1-235ENST00000537033 C4orf26Q17RF5 130 aa6.47□□□□□ -1.37
SYNE1-235ENST00000537033 MACF1Q9UPN3 7388 aaKnown RBP6.46□□□□□ -1.38
SYNE1-235ENST00000537033 FAM236AA0A1B0GUQ0 79 aa6.43□□□□□ -1.38
SYNE1-235ENST00000537033 FAM236BA0A1B0GV22 79 aa6.43□□□□□ -1.38
SYNE1-235ENST00000537033 C5orf47Q569G3 176 aa6.41□□□□□ -1.38
SYNE1-235ENST00000537033 HIST1H4AP62805 103 aaKnown RBP6.4□□□□□ -1.38
SYNE1-235ENST00000537033 KRTAP6-3Q3LI67 103 aa6.4□□□□□ -1.38
SYNE1-235ENST00000537033 SYNE2Q8WXH0 6885 aaKnown RBP6.39□□□□□ -1.39
SYNE1-235ENST00000537033 S4R3F8 94 aa6.39□□□□□ -1.39
SYNE1-235ENST00000537033 PCP4P48539 62 aa6.36□□□□□ -1.39
SYNE1-235ENST00000537033 A0A087WVE0 104 aa6.35□□□□□ -1.39
SYNE1-235ENST00000537033 CSAG1Q6PB30 78 aa6.35□□□□□ -1.39
SYNE1-235ENST00000537033 C1orf64Q8NEQ6 169 aa6.34□□□□□ -1.39
SYNE1-235ENST00000537033 Q5VV11 94 aa6.32□□□□□ -1.4
SYNE1-235ENST00000537033 A6NN06 94 aa6.31□□□□□ -1.4
SYNE1-235ENST00000537033 ATOX1O00244 68 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms