RNA–Protein interactions for RNA: ENST00000531513.5

USP47-211, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 936 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-211ENST00000531513 TEP1Q99973 2627 aaKnown RBP0.26□□□□□ -2.37
USP47-211ENST00000531513 CELSR1Q9NYQ6 3014 aa0.25□□□□□ -2.37
USP47-211ENST00000531513 SETXQ7Z333 2677 aaKnown RBP0.25□□□□□ -2.37
USP47-211ENST00000531513 ACANP16112 2415 aa0.25□□□□□ -2.37
USP47-211ENST00000531513 SPRR2AP35326 72 aa0.24□□□□□ -2.37
USP47-211ENST00000531513 KRTAP20-1Q3LI63 56 aa0.24□□□□□ -2.37
USP47-211ENST00000531513 HECTD1Q9ULT8 2610 aa0.24□□□□□ -2.37
USP47-211ENST00000531513 LMO7Q8WWI1 1683 aa0.24□□□□□ -2.37
USP47-211ENST00000531513 APC2O95996 2303 aa0.24□□□□□ -2.37
USP47-211ENST00000531513 KIF21BO75037 1637 aa0.24□□□□□ -2.37
USP47-211ENST00000531513 COL6A5A8TX70 2615 aa0.23□□□□□ -2.37
USP47-211ENST00000531513 SONP18583 2426 aaKnown RBP0.23□□□□□ -2.37
USP47-211ENST00000531513 RYR2Q92736 4967 aa0.23□□□□□ -2.37
USP47-211ENST00000531513 PRRC2CQ9Y520 2896 aaKnown RBP0.23□□□□□ -2.37
USP47-211ENST00000531513 KAAG1Q9UBP8 84 aa0.23□□□□□ -2.37
USP47-211ENST00000531513 WNK1Q9H4A3 2382 aa0.22□□□□□ -2.37
USP47-211ENST00000531513 WFDC10BQ8IUB3 73 aa0.22□□□□□ -2.37
USP47-211ENST00000531513 SMIM2Q9BVW6 85 aa0.22□□□□□ -2.37
USP47-211ENST00000531513 HMCN2Q8NDA2 5059 aa0.22□□□□□ -2.37
USP47-211ENST00000531513 HSPG2P98160 4391 aa0.21□□□□□ -2.38
USP47-211ENST00000531513 RYR1P21817 5038 aa0.21□□□□□ -2.38
USP47-211ENST00000531513 MMP24-AS1A0A0U1RRL7 71 aa0.21□□□□□ -2.38
USP47-211ENST00000531513 NSD1Q96L73 2696 aaPredicted RBP0.21□□□□□ -2.38
USP47-211ENST00000531513 CREBBPQ92793 2442 aa0.21□□□□□ -2.38
USP47-211ENST00000531513 RNF213Q63HN8 5207 aa0.2□□□□□ -2.38
USP47-211ENST00000531513 TOMM5Q8N4H5 51 aa0.2□□□□□ -2.38
USP47-211ENST00000531513 DMBT1Q9UGM3 2413 aaPredicted RBP0.2□□□□□ -2.38
USP47-211ENST00000531513 FLNBO75369 2602 aaKnown RBP0.19□□□□□ -2.38
USP47-211ENST00000531513 TNRC18O15417 2968 aaPredicted RBP0.19□□□□□ -2.38
USP47-211ENST00000531513 A8MTW9 85 aa0.19□□□□□ -2.38
USP47-211ENST00000531513 DEFB131AP59861 70 aa0.19□□□□□ -2.38
USP47-211ENST00000531513 HIVEP1P15822 2718 aa0.19□□□□□ -2.38
USP47-211ENST00000531513 EPPK1P58107 5090 aaKnown RBP0.18□□□□□ -2.38
USP47-211ENST00000531513 STAB2Q8WWQ8 2551 aa0.18□□□□□ -2.38
USP47-211ENST00000531513 MAP1BP46821 2468 aaKnown RBP0.18□□□□□ -2.38
USP47-211ENST00000531513 M0QY20 66 aa0.18□□□□□ -2.38
USP47-211ENST00000531513 IQGAP2Q13576 1575 aa0.18□□□□□ -2.38
USP47-211ENST00000531513 LRP1BQ9NZR2 4599 aa0.18□□□□□ -2.38
USP47-211ENST00000531513 A0A1B0GUL6 1792 aa0.17□□□□□ -2.38
USP47-211ENST00000531513 TFF3Q07654 80 aa0.17□□□□□ -2.38
USP47-211ENST00000531513 HERC1Q15751 4861 aa0.17□□□□□ -2.38
USP47-211ENST00000531513 FLNCQ14315 2725 aa0.16□□□□□ -2.38
USP47-211ENST00000531513 COL7A1Q02388 2944 aa0.16□□□□□ -2.38
USP47-211ENST00000531513 FLNAP21333 2647 aaKnown RBP0.16□□□□□ -2.38
USP47-211ENST00000531513 KRTAP6-2Q3LI66 62 aa0.16□□□□□ -2.38
USP47-211ENST00000531513 SETD2Q9BYW2 2564 aaPredicted RBP0.16□□□□□ -2.38
USP47-211ENST00000531513 ABCA13Q86UQ4 5058 aa0.16□□□□□ -2.38
USP47-211ENST00000531513 IQGAP1P46940 1657 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 TRPM2O94759 1503 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 PKD1P98161 4303 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 M0QZ58 72 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 MT1AP04731 61 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 TNP1P09430 55 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 RYR3Q15413 4870 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 DCHS2Q6V1P9 2916 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 HYDINQ4G0P3 5121 aa0.15□□□□□ -2.39
USP47-211ENST00000531513 SPRR2EP22531 72 aa0.14□□□□□ -2.39
USP47-211ENST00000531513 SPRR2GQ9BYE4 73 aa0.14□□□□□ -2.39
USP47-211ENST00000531513 HECTD4Q9Y4D8 3996 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 NBASA2RRP1 2371 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 RIF1Q5UIP0 2472 aaKnown RBP0.13□□□□□ -2.39
USP47-211ENST00000531513 COL12A1Q99715 3063 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 PDZD2O15018 2839 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 DEFB110Q30KQ9 67 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 FAM208AQ9UK61 1670 aaKnown RBP0.13□□□□□ -2.39
USP47-211ENST00000531513 LRP2P98164 4655 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 LYSTQ99698 3801 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 MUC12Q9UKN1 5478 aa0.13□□□□□ -2.39
USP47-211ENST00000531513 DDX60Q8IY21 1712 aaKnown RBP0.13□□□□□ -2.39
USP47-211ENST00000531513 CEP290O15078 2479 aa0.12□□□□□ -2.39
USP47-211ENST00000531513 DOPEY1Q5JWR5 2465 aa0.11□□□□□ -2.39
USP47-211ENST00000531513 NDUFA1O15239 70 aa0.11□□□□□ -2.39
USP47-211ENST00000531513 NF1P21359 2839 aa0.11□□□□□ -2.39
USP47-211ENST00000531513 FASNP49327 2511 aaKnown RBP0.1□□□□□ -2.39
USP47-211ENST00000531513 USH2AO75445 5202 aa0.1□□□□□ -2.39
USP47-211ENST00000531513 PKHD1P08F94 4074 aa0.1□□□□□ -2.39
USP47-211ENST00000531513 NFAT5O94916 1531 aa0.09□□□□□ -2.39
USP47-211ENST00000531513 SACSQ9NZJ4 4579 aa0.08□□□□□ -2.4
USP47-211ENST00000531513 ZANQ9Y493 2812 aa0.08□□□□□ -2.4
USP47-211ENST00000531513 ANKRD11Q6UB99 2663 aaPredicted RBP0.08□□□□□ -2.4
USP47-211ENST00000531513 MYO18BQ8IUG5 2567 aa0.07□□□□□ -2.4
USP47-211ENST00000531513 NBEAL2Q6ZNJ1 2754 aa0.07□□□□□ -2.4
USP47-211ENST00000531513 VPS13BQ7Z7G8 4022 aa0.07□□□□□ -2.4
USP47-211ENST00000531513 BIRC6Q9NR09 4857 aa0.07□□□□□ -2.4
USP47-211ENST00000531513 USP9XQ93008 2570 aaPredicted RBP0.06□□□□□ -2.4
USP47-211ENST00000531513 HERC2O95714 4834 aa0.06□□□□□ -2.4
USP47-211ENST00000531513 SPRR2FQ96RM1 72 aa0.06□□□□□ -2.4
USP47-211ENST00000531513 ACACBO00763 2458 aa0.06□□□□□ -2.4
USP47-211ENST00000531513 CCDC168Q8NDH2 2452 aa0.06□□□□□ -2.4
USP47-211ENST00000531513 MTORP42345 2549 aa0.06□□□□□ -2.4
USP47-211ENST00000531513 ANK3Q12955 4377 aaKnown RBP0.06□□□□□ -2.4
USP47-211ENST00000531513 ITPR1Q14643 2758 aa0.06□□□□□ -2.4
USP47-211ENST00000531513 CLTCL1P53675 1640 aa0.05□□□□□ -2.4
USP47-211ENST00000531513 EPG5Q9HCE0 2579 aa0.05□□□□□ -2.4
USP47-211ENST00000531513 DNAH9Q9NYC9 4486 aa0.05□□□□□ -2.4
USP47-211ENST00000531513 TENM2Q9NT68 2774 aa0.05□□□□□ -2.4
USP47-211ENST00000531513 PKHD1L1Q86WI1 4243 aa0.04□□□□□ -2.4
USP47-211ENST00000531513 ATP7AQ04656 1500 aa0.04□□□□□ -2.4
USP47-211ENST00000531513 FAT3Q8TDW7 4589 aa0.04□□□□□ -2.4
USP47-211ENST00000531513 WDFY4Q6ZS81 3184 aa0.04□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms