RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 F8P00451 2351 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 K7EQZ3 153 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 PRCDQ00LT1 54 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 PCOTHQ58A44 107 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 KRTAP13-1Q8IUC0 172 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 LEAP2Q969E1 77 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 TP53AIP1Q9HCN2 124 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 CRCT1Q9UGL9 99 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 TLN2Q9Y4G6 2542 aa1.44□□□□□ -2.18
CD44-229ENST00000528672 CACNA1HO95180 2353 aa1.43□□□□□ -2.18
CD44-229ENST00000528672 MYO15AQ9UKN7 3530 aa1.43□□□□□ -2.18
CD44-229ENST00000528672 H0YAA0 97 aa1.43□□□□□ -2.18
CD44-229ENST00000528672 KRTAP6-3Q3LI67 103 aa1.43□□□□□ -2.18
CD44-229ENST00000528672 ICE1Q9Y2F5 2266 aa1.43□□□□□ -2.18
CD44-229ENST00000528672 KNTC1P50748 2209 aa1.43□□□□□ -2.18
CD44-229ENST00000528672 COL12A1Q99715 3063 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 SYNE2Q8WXH0 6885 aaKnown RBP1.42□□□□□ -2.18
CD44-229ENST00000528672 IGLV5-48A0A075B6I7 105 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 KRTAP13-4Q3LI77 160 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 MINOS1Q5TGZ0 78 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 C6orf48Q9UBA6 75 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 URB1O60287 2271 aaKnown RBP1.42□□□□□ -2.18
CD44-229ENST00000528672 WDFY3Q8IZQ1 3526 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 FREM2Q5SZK8 3169 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 ASXL3Q9C0F0 2248 aa1.42□□□□□ -2.18
CD44-229ENST00000528672 TGP01266 2768 aa1.41□□□□□ -2.18
CD44-229ENST00000528672 COX6B2Q6YFQ2 88 aa1.41□□□□□ -2.18
CD44-229ENST00000528672 Q6ZSA8 131 aa1.41□□□□□ -2.18
CD44-229ENST00000528672 WFDC13Q8IUB5 93 aa1.41□□□□□ -2.18
CD44-229ENST00000528672 DEFB106AQ8N104 65 aa1.41□□□□□ -2.18
CD44-229ENST00000528672 MRPL34Q9BQ48 92 aaKnown RBP1.41□□□□□ -2.18
CD44-229ENST00000528672 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.41□□□□□ -2.18
CD44-229ENST00000528672 CELSR1Q9NYQ6 3014 aa1.41□□□□□ -2.18
CD44-229ENST00000528672 HERC1Q15751 4861 aa1.41□□□□□ -2.18
CD44-229ENST00000528672 DSPP15924 2871 aaKnown RBP1.4□□□□□ -2.19
CD44-229ENST00000528672 AHCTF1Q8WYP5 2266 aa1.4□□□□□ -2.19
CD44-229ENST00000528672 M0QY20 66 aa1.4□□□□□ -2.19
CD44-229ENST00000528672 RPL37P61927 97 aaKnown RBP1.4□□□□□ -2.19
CD44-229ENST00000528672 COX6A2Q02221 97 aa1.4□□□□□ -2.19
CD44-229ENST00000528672 FRYLO94915 3013 aa1.4□□□□□ -2.19
CD44-229ENST00000528672 MACF1Q9UPN3 7388 aaKnown RBP1.4□□□□□ -2.19
CD44-229ENST00000528672 OTOGQ6ZRI0 2925 aa1.39□□□□□ -2.19
CD44-229ENST00000528672 LYNX1P0DP58 116 aa1.39□□□□□ -2.19
CD44-229ENST00000528672 SPINK13Q1W4C9 94 aa1.39□□□□□ -2.19
CD44-229ENST00000528672 WFDC10BQ8IUB3 73 aa1.39□□□□□ -2.19
CD44-229ENST00000528672 C10orf95Q9H7T3 257 aa1.39□□□□□ -2.19
CD44-229ENST00000528672 MGAM2Q2M2H8 2515 aa1.39□□□□□ -2.19
CD44-229ENST00000528672 PTPRQQ9UMZ3 2332 aa1.39□□□□□ -2.19
CD44-229ENST00000528672 PRRC2CQ9Y520 2896 aaKnown RBP1.38□□□□□ -2.19
CD44-229ENST00000528672 NSD1Q96L73 2696 aaPredicted RBP1.38□□□□□ -2.19
CD44-229ENST00000528672 KRTAP12-1P59990 96 aa1.38□□□□□ -2.19
CD44-229ENST00000528672 KRTAP12-3P60328 96 aa1.38□□□□□ -2.19
CD44-229ENST00000528672 LELP1Q5T871 98 aa1.38□□□□□ -2.19
CD44-229ENST00000528672 UBE2DNLQ8IWF7 75 aa1.38□□□□□ -2.19
CD44-229ENST00000528672 SPENQ96T58 3664 aaKnown RBP1.37□□□□□ -2.19
CD44-229ENST00000528672 FAT4Q6V0I7 4981 aa1.37□□□□□ -2.19
CD44-229ENST00000528672 CACNA1EQ15878 2313 aa1.37□□□□□ -2.19
CD44-229ENST00000528672 DOPEY2Q9Y3R5 2298 aa1.37□□□□□ -2.19
CD44-229ENST00000528672 NBPF19A0A087WUL8 3843 aa1.36□□□□□ -2.19
CD44-229ENST00000528672 DMDP11532 3685 aa1.36□□□□□ -2.19
CD44-229ENST00000528672 H1FX-AS1Q4G0G2 97 aa1.36□□□□□ -2.19
CD44-229ENST00000528672 USMG5Q96IX5 58 aa1.36□□□□□ -2.19
CD44-229ENST00000528672 TENM2Q9NT68 2774 aa1.36□□□□□ -2.19
CD44-229ENST00000528672 FLG2Q5D862 2391 aaPredicted RBP1.36□□□□□ -2.19
CD44-229ENST00000528672 HIVEP1P15822 2718 aa1.36□□□□□ -2.19
CD44-229ENST00000528672 LRBAP50851 2863 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 ITPR2Q14571 2701 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 TRIOO75962 3097 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 MMP24-AS1A0A0U1RRL7 71 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 DEFB130BP0DP73 79 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 DEFB130AP0DP74 79 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 WT1-ASQ06250 92 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 UNQ6190/PRO20217Q6UXQ8 127 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 TMEM167AQ8TBQ9 72 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 KAAG1Q9UBP8 84 aa1.35□□□□□ -2.19
CD44-229ENST00000528672 AKAP13Q12802 2813 aa1.34□□□□□ -2.19
CD44-229ENST00000528672 ASCC3Q8N3C0 2202 aaKnown RBP1.34□□□□□ -2.19
CD44-229ENST00000528672 DEFB131AP59861 70 aa1.34□□□□□ -2.19
CD44-229ENST00000528672 KRTAP21-2Q3LI59 83 aa1.34□□□□□ -2.19
CD44-229ENST00000528672 DEFB104AQ8WTQ1 72 aa1.34□□□□□ -2.19
CD44-229ENST00000528672 TENM3Q9P273 2699 aa1.33□□□□□ -2.2
CD44-229ENST00000528672 A8MTW9 85 aa1.33□□□□□ -2.2
CD44-229ENST00000528672 K7EIM0 57 aa1.33□□□□□ -2.2
CD44-229ENST00000528672 PLCE1Q9P212 2302 aa1.33□□□□□ -2.2
CD44-229ENST00000528672 NIPBLQ6KC79 2804 aaeCLIP1.33□□□□□ -2.2
CD44-229ENST00000528672 MXRA5Q9NR99 2828 aa1.33□□□□□ -2.2
CD44-229ENST00000528672 ADGRG4Q8IZF6 3080 aa1.33□□□□□ -2.2
CD44-229ENST00000528672 CSMD2Q7Z408 3487 aa1.32□□□□□ -2.2
CD44-229ENST00000528672 CHD7Q9P2D1 2997 aa1.32□□□□□ -2.2
CD44-229ENST00000528672 KNL1Q8NG31 2342 aa1.32□□□□□ -2.2
CD44-229ENST00000528672 WNK1Q9H4A3 2382 aa1.32□□□□□ -2.2
CD44-229ENST00000528672 RPL39P5Q59GN2 51 aa1.32□□□□□ -2.2
CD44-229ENST00000528672 COL6A6A6NMZ7 2263 aa1.31□□□□□ -2.2
CD44-229ENST00000528672 CSPG4Q6UVK1 2322 aa1.31□□□□□ -2.2
CD44-229ENST00000528672 CLPSL2Q6UWE3 100 aa1.31□□□□□ -2.2
CD44-229ENST00000528672 TOMM7Q9P0U1 55 aa1.31□□□□□ -2.2
CD44-229ENST00000528672 SSPOA2VEC9 5147 aa1.31□□□□□ -2.2
CD44-229ENST00000528672 APCP25054 2843 aa1.3□□□□□ -2.2
CD44-229ENST00000528672 DEFB108AA8MXU0 73 aa1.3□□□□□ -2.2
CD44-229ENST00000528672 K7EIL1 84 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms