RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ETDBQ3ZM63 59 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 C9orf153Q5TBE3 101 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 Q6Q795 121 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 IGFL1Q6UW32 110 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 SPINK1P00995 79 aa4.3□□□□□ -1.72
CD44-228ENST00000528455 TNXBP22105 4242 aa4.29□□□□□ -1.72
CD44-228ENST00000528455 CCKP06307 115 aa4.29□□□□□ -1.72
CD44-228ENST00000528455 Q6ZQT0 140 aa4.29□□□□□ -1.72
CD44-228ENST00000528455 RPS29P62273 56 aaKnown RBP4.28□□□□□ -1.72
CD44-228ENST00000528455 LINC00304Q8N9R0 145 aa4.28□□□□□ -1.72
CD44-228ENST00000528455 C14orf132Q9NPU4 83 aa4.28□□□□□ -1.72
CD44-228ENST00000528455 A0A1W2PNM2 257 aa4.27□□□□□ -1.73
CD44-228ENST00000528455 Q5XG85 94 aa4.27□□□□□ -1.73
CD44-228ENST00000528455 A0A0G2JQZ4 141 aa4.26□□□□□ -1.73
CD44-228ENST00000528455 TRBV7-7A0A0K0K1E9 115 aa4.25□□□□□ -1.73
CD44-228ENST00000528455 A0A1B0GV72 72 aa4.25□□□□□ -1.73
CD44-228ENST00000528455 ACYP1P07311 99 aa4.24□□□□□ -1.73
CD44-228ENST00000528455 ASB16-AS1Q495Z4 193 aa4.24□□□□□ -1.73
CD44-228ENST00000528455 HRCT1Q6UXD1 115 aa4.24□□□□□ -1.73
CD44-228ENST00000528455 J3QR89 54 aa4.23□□□□□ -1.73
CD44-228ENST00000528455 VPS25Q9BRG1 176 aa4.23□□□□□ -1.73
CD44-228ENST00000528455 LIMD2Q9BT23 127 aa4.23□□□□□ -1.73
CD44-228ENST00000528455 SS18L2Q9UHA2 77 aa4.23□□□□□ -1.73
CD44-228ENST00000528455 RNF213Q63HN8 5207 aa4.22□□□□□ -1.73
CD44-228ENST00000528455 A0A087WSZ3 146 aa4.21□□□□□ -1.74
CD44-228ENST00000528455 NREPQ16612 68 aa4.21□□□□□ -1.74
CD44-228ENST00000528455 Q75L30 129 aa4.21□□□□□ -1.74
CD44-228ENST00000528455 FAM240AA0A1B0GVK7 77 aa4.2□□□□□ -1.74
CD44-228ENST00000528455 LRP2P98164 4655 aa4.19□□□□□ -1.74
CD44-228ENST00000528455 LINC00472Q9H8W2 130 aa4.19□□□□□ -1.74
CD44-228ENST00000528455 LINC00846Q9NV44 126 aa4.19□□□□□ -1.74
CD44-228ENST00000528455 K7ERU9 68 aa4.18□□□□□ -1.74
CD44-228ENST00000528455 C1orf195Q5TG92 126 aa4.18□□□□□ -1.74
CD44-228ENST00000528455 UBL5Q9BZL1 73 aa4.18□□□□□ -1.74
CD44-228ENST00000528455 J3KT08 172 aa4.17□□□□□ -1.74
CD44-228ENST00000528455 Q6ZVQ6 151 aa4.16□□□□□ -1.74
CD44-228ENST00000528455 FP248Q71RG6 208 aaPredicted RBP4.16□□□□□ -1.74
CD44-228ENST00000528455 Q96NJ1 140 aa4.16□□□□□ -1.74
CD44-228ENST00000528455 IGKV4-1P06312 121 aa4.14□□□□□ -1.75
CD44-228ENST00000528455 SIGMAR1Q99720 223 aa4.14□□□□□ -1.75
CD44-228ENST00000528455 BPY2O14599 106 aa4.13□□□□□ -1.75
CD44-228ENST00000528455 NDUFB1O75438 58 aa4.13□□□□□ -1.75
CD44-228ENST00000528455 CXCL6P80162 114 aa4.13□□□□□ -1.75
CD44-228ENST00000528455 DEFB116Q30KQ4 102 aa4.13□□□□□ -1.75
CD44-228ENST00000528455 LINC00643Q86TS7 51 aa4.13□□□□□ -1.75
CD44-228ENST00000528455 KRTAP2-2Q9BYT5 123 aa4.13□□□□□ -1.75
CD44-228ENST00000528455 IGLV7-46A0A075B6I9 117 aa4.11□□□□□ -1.75
CD44-228ENST00000528455 A8MWP4 228 aa4.11□□□□□ -1.75
CD44-228ENST00000528455 DSCR10P59022 87 aa4.11□□□□□ -1.75
CD44-228ENST00000528455 RETNLBQ9BQ08 111 aa4.11□□□□□ -1.75
CD44-228ENST00000528455 PRR4Q16378 134 aa4.1□□□□□ -1.75
CD44-228ENST00000528455 LPAP08519 4548 aa4.1□□□□□ -1.75
CD44-228ENST00000528455 A0A1B0GVX0 72 aa4.09□□□□□ -1.75
CD44-228ENST00000528455 LINC00313P59037 77 aa4.09□□□□□ -1.75
CD44-228ENST00000528455 ATP5EP2Q5VTU8 51 aa4.09□□□□□ -1.75
CD44-228ENST00000528455 PRR15Q8IV56 129 aa4.09□□□□□ -1.75
CD44-228ENST00000528455 IGKV3D-7A0A0C4DH55 119 aa4.08□□□□□ -1.76
CD44-228ENST00000528455 C8orf87E5RJ46 101 aa4.07□□□□□ -1.76
CD44-228ENST00000528455 TPRXLQ17RH7 258 aa4.07□□□□□ -1.76
CD44-228ENST00000528455 IMUPQ9GZP8 106 aa4.07□□□□□ -1.76
CD44-228ENST00000528455 IGHV6-1A0A0B4J1U7 121 aa4.06□□□□□ -1.76
CD44-228ENST00000528455 K7EQZ3 153 aa4.06□□□□□ -1.76
CD44-228ENST00000528455 KRTAP13-3Q3SY46 172 aa4.06□□□□□ -1.76
CD44-228ENST00000528455 MUC2Q02817 5179 aa4.04□□□□□ -1.76
CD44-228ENST00000528455 MT3P25713 68 aa4.04□□□□□ -1.76
CD44-228ENST00000528455 C8orf17Q9NRJ1 99 aa4.04□□□□□ -1.76
CD44-228ENST00000528455 HIST1H4AP62805 103 aaKnown RBP4.03□□□□□ -1.76
CD44-228ENST00000528455 NOTCH2NLQ7Z3S9 236 aa4.03□□□□□ -1.76
CD44-228ENST00000528455 Q8N9L7 120 aa4.03□□□□□ -1.76
CD44-228ENST00000528455 C9orf92A6NGG3 77 aa4.02□□□□□ -1.77
CD44-228ENST00000528455 MMP24-AS1A0A0U1RRL7 71 aa4.01□□□□□ -1.77
CD44-228ENST00000528455 hDV103S1A0JD37 113 aa4.01□□□□□ -1.77
CD44-228ENST00000528455 KRTAP16-1A8MUX0 517 aa4.01□□□□□ -1.77
CD44-228ENST00000528455 HCG22E2RYF7 251 aa4.01□□□□□ -1.77
CD44-228ENST00000528455 CASC2Q6XLA1 102 aa4.01□□□□□ -1.77
CD44-228ENST00000528455 TMEM254Q8TBM7 123 aa4.01□□□□□ -1.77
CD44-228ENST00000528455 MRPL34Q9BQ48 92 aaKnown RBP4.01□□□□□ -1.77
CD44-228ENST00000528455 A8MUU9 505 aa4□□□□□ -1.77
CD44-228ENST00000528455 MT-ATP8P03928 68 aa4□□□□□ -1.77
CD44-228ENST00000528455 C20orf166-AS1Q96NR2 134 aa4□□□□□ -1.77
CD44-228ENST00000528455 A0A0U1RQV1 116 aa3.97□□□□□ -1.77
CD44-228ENST00000528455 RPL37P61927 97 aaKnown RBP3.97□□□□□ -1.77
CD44-228ENST00000528455 WFDC13Q8IUB5 93 aa3.97□□□□□ -1.77
CD44-228ENST00000528455 TP53AIP1Q9HCN2 124 aa3.97□□□□□ -1.77
CD44-228ENST00000528455 A0A087WVE0 104 aa3.96□□□□□ -1.78
CD44-228ENST00000528455 ATP11AUNQ6ZP68 121 aa3.96□□□□□ -1.78
CD44-228ENST00000528455 NDUFS5O43920 106 aa3.94□□□□□ -1.78
CD44-228ENST00000528455 SCGB1A1P11684 91 aa3.94□□□□□ -1.78
CD44-228ENST00000528455 SMIM20Q8N5G0 67 aa3.92□□□□□ -1.78
CD44-228ENST00000528455 ZCCHC13Q8WW36 166 aaKnown RBP3.92□□□□□ -1.78
CD44-228ENST00000528455 MUC17Q685J3 4493 aa3.92□□□□□ -1.78
CD44-228ENST00000528455 UQCRQO14949 82 aa3.91□□□□□ -1.78
CD44-228ENST00000528455 OCR1Q9BZK8 76 aa3.91□□□□□ -1.78
CD44-228ENST00000528455 FAM236AA0A1B0GUQ0 79 aa3.9□□□□□ -1.79
CD44-228ENST00000528455 FAM236BA0A1B0GV22 79 aa3.9□□□□□ -1.79
CD44-228ENST00000528455 C5orf47Q569G3 176 aa3.9□□□□□ -1.79
CD44-228ENST00000528455 PCOTHQ58A44 107 aa3.9□□□□□ -1.79
CD44-228ENST00000528455 FAT4Q6V0I7 4981 aa3.9□□□□□ -1.79
CD44-228ENST00000528455 ATOX1O00244 68 aa3.89□□□□□ -1.79
CD44-228ENST00000528455 Q5W150 140 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms