RNA–Protein interactions for RNA: ENST00000526457.3

LRRK1-205, Transcript of leucine rich repeat kinase 1, human

TSL 1 (best)

Gene LRRK1, Length 11,632 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRK1-205	ENST00000526457		M0R2T5	61 aa		4.66	□□□□□ -1.66
LRRK1-205	ENST00000526457	LCE6A	A0A183	80 aa		4.66	□□□□□ -1.66
LRRK1-205	ENST00000526457	TG	P01266	2768 aa		4.65	□□□□□ -1.66
LRRK1-205	ENST00000526457		K7EIL1	84 aa		4.65	□□□□□ -1.66
LRRK1-205	ENST00000526457	WWC2-AS2	Q96NR7	200 aa		4.65	□□□□□ -1.67
LRRK1-205	ENST00000526457	MXRA5	Q9NR99	2828 aa		4.65	□□□□□ -1.67
LRRK1-205	ENST00000526457	SPRR1B	P22528	89 aa		4.64	□□□□□ -1.67
LRRK1-205	ENST00000526457	COL6A3	P12111	3177 aa		4.64	□□□□□ -1.67
LRRK1-205	ENST00000526457		A0A087X002	238 aa		4.63	□□□□□ -1.67
LRRK1-205	ENST00000526457		A8MU10	97 aa		4.62	□□□□□ -1.67
LRRK1-205	ENST00000526457	KRTAP26-1	Q6PEX3	210 aa		4.62	□□□□□ -1.67
LRRK1-205	ENST00000526457	PANO1	I0J062	215 aa		4.61	□□□□□ -1.67
LRRK1-205	ENST00000526457	HRNR	Q86YZ3	2850 aa	Predicted RBP	4.61	□□□□□ -1.67
LRRK1-205	ENST00000526457	ATM	Q13315	3056 aa		4.6	□□□□□ -1.67
LRRK1-205	ENST00000526457	VCAN	P13611	3396 aa		4.59	□□□□□ -1.67
LRRK1-205	ENST00000526457		A8MUU9	505 aa		4.59	□□□□□ -1.67
LRRK1-205	ENST00000526457	CDH23	Q9H251	3354 aa		4.58	□□□□□ -1.68
LRRK1-205	ENST00000526457	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.58	□□□□□ -1.68
LRRK1-205	ENST00000526457	C10orf95	Q9H7T3	257 aa		4.56	□□□□□ -1.68
LRRK1-205	ENST00000526457	CFAP47	Q6ZTR5	3102 aa		4.55	□□□□□ -1.68
LRRK1-205	ENST00000526457	KRTAP10-3	P60369	221 aa		4.55	□□□□□ -1.68
LRRK1-205	ENST00000526457	PLAC8	Q9NZF1	115 aa		4.54	□□□□□ -1.68
LRRK1-205	ENST00000526457	KRTAP11-1	Q8IUC1	163 aa		4.51	□□□□□ -1.69
LRRK1-205	ENST00000526457	CELSR1	Q9NYQ6	3014 aa		4.51	□□□□□ -1.69
LRRK1-205	ENST00000526457	KRTAP1-3	Q8IUG1	177 aa		4.51	□□□□□ -1.69
LRRK1-205	ENST00000526457	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.5	□□□□□ -1.69
LRRK1-205	ENST00000526457	TENM2	Q9NT68	2774 aa		4.5	□□□□□ -1.69
LRRK1-205	ENST00000526457	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.49	□□□□□ -1.69
LRRK1-205	ENST00000526457	KRTAP1-1	Q07627	177 aa		4.46	□□□□□ -1.7
LRRK1-205	ENST00000526457	NOTCH2NL	Q7Z3S9	236 aa		4.45	□□□□□ -1.7
LRRK1-205	ENST00000526457	PP632	Q6XCG6	107 aa		4.44	□□□□□ -1.7
LRRK1-205	ENST00000526457	EYS	Q5T1H1	3165 aa		4.44	□□□□□ -1.7
LRRK1-205	ENST00000526457	RPS29	P62273	56 aa	Known RBP	4.44	□□□□□ -1.7
LRRK1-205	ENST00000526457	TNP1	P09430	55 aa		4.39	□□□□□ -1.71
LRRK1-205	ENST00000526457	SZT2	Q5T011	3432 aa		4.38	□□□□□ -1.71
LRRK1-205	ENST00000526457		P0C880	135 aa		4.38	□□□□□ -1.71
LRRK1-205	ENST00000526457	WDFY3	Q8IZQ1	3526 aa		4.38	□□□□□ -1.71
LRRK1-205	ENST00000526457	SPEG	Q15772	3267 aa		4.37	□□□□□ -1.71
LRRK1-205	ENST00000526457	LOC400499	M0QZD8	3231 aa		4.35	□□□□□ -1.71
LRRK1-205	ENST00000526457	COL7A1	Q02388	2944 aa		4.35	□□□□□ -1.71
LRRK1-205	ENST00000526457	KRTAP1-5	Q9BYS1	174 aa		4.34	□□□□□ -1.72
LRRK1-205	ENST00000526457	MYO15A	Q9UKN7	3530 aa		4.32	□□□□□ -1.72
LRRK1-205	ENST00000526457		Q5VSD8	79 aa		4.31	□□□□□ -1.72
LRRK1-205	ENST00000526457		H0YAA0	97 aa		4.29	□□□□□ -1.72
LRRK1-205	ENST00000526457	KRTAP10-1	P60331	282 aa		4.28	□□□□□ -1.72
LRRK1-205	ENST00000526457	FBN1	P35555	2871 aa	Known RBP	4.25	□□□□□ -1.73
LRRK1-205	ENST00000526457	KRTAP10-8	P60410	259 aa		4.24	□□□□□ -1.73
LRRK1-205	ENST00000526457	SPEN	Q96T58	3664 aa	Known RBP	4.24	□□□□□ -1.73
LRRK1-205	ENST00000526457	LAMA5	O15230	3695 aa		4.24	□□□□□ -1.73
LRRK1-205	ENST00000526457	KRTAP10-2	P60368	255 aa		4.23	□□□□□ -1.73
LRRK1-205	ENST00000526457	KRTAP13-1	Q8IUC0	172 aa		4.22	□□□□□ -1.73
LRRK1-205	ENST00000526457	NBPF19	A0A087WUL8	3843 aa		4.22	□□□□□ -1.73
LRRK1-205	ENST00000526457	ZFHX3	Q15911	3703 aa		4.21	□□□□□ -1.74
LRRK1-205	ENST00000526457	ASPM	Q8IZT6	3477 aa		4.21	□□□□□ -1.74
LRRK1-205	ENST00000526457	MEGF8	Q7Z7M0	2845 aa		4.17	□□□□□ -1.74
LRRK1-205	ENST00000526457	AKAP9	Q99996	3911 aa		4.17	□□□□□ -1.74
LRRK1-205	ENST00000526457	DMD	P11532	3685 aa		4.17	□□□□□ -1.74
LRRK1-205	ENST00000526457	FBN3	Q75N90	2809 aa		4.17	□□□□□ -1.74
LRRK1-205	ENST00000526457		Q6ZRN7	208 aa	Predicted RBP	4.15	□□□□□ -1.75
LRRK1-205	ENST00000526457	KRTAP13-2	Q52LG2	175 aa		4.14	□□□□□ -1.75
LRRK1-205	ENST00000526457	SMG1	Q96Q15	3661 aa	Known RBP	4.13	□□□□□ -1.75
LRRK1-205	ENST00000526457	KRTAP7-1	Q8IUC3	87 aa		4.12	□□□□□ -1.75
LRRK1-205	ENST00000526457	RELN	P78509	3460 aa		4.11	□□□□□ -1.75
LRRK1-205	ENST00000526457	VPS13C	Q709C8	3753 aa		4.09	□□□□□ -1.75
LRRK1-205	ENST00000526457	DCHS1	Q96JQ0	3298 aa		4.08	□□□□□ -1.76
LRRK1-205	ENST00000526457	OTOG	Q6ZRI0	2925 aa		4.07	□□□□□ -1.76
LRRK1-205	ENST00000526457	INE1	O15225	51 aa		4.05	□□□□□ -1.76
LRRK1-205	ENST00000526457	TRRAP	Q9Y4A5	3859 aa		4.04	□□□□□ -1.76
LRRK1-205	ENST00000526457	CSMD1	Q96PZ7	3565 aa		4.03	□□□□□ -1.76
LRRK1-205	ENST00000526457	ZFHX4	Q86UP3	3567 aa		4.03	□□□□□ -1.77
LRRK1-205	ENST00000526457	KRTAP23-1	A1A580	65 aa		4.02	□□□□□ -1.77
LRRK1-205	ENST00000526457	KRTAP13-3	Q3SY46	172 aa		4	□□□□□ -1.77
LRRK1-205	ENST00000526457	TPRXL	Q17RH7	258 aa		3.98	□□□□□ -1.77
LRRK1-205	ENST00000526457	KRTAP21-3	Q3LHN1	58 aa		3.97	□□□□□ -1.77
LRRK1-205	ENST00000526457	KRTAP12-2	P59991	146 aa		3.95	□□□□□ -1.78
LRRK1-205	ENST00000526457	BSN	Q9UPA5	3926 aa		3.95	□□□□□ -1.78
LRRK1-205	ENST00000526457	PRO2289	Q9P1D8	64 aa		3.94	□□□□□ -1.78
LRRK1-205	ENST00000526457		A0A1B0GVY2	172 aa		3.93	□□□□□ -1.78
LRRK1-205	ENST00000526457	KRTAP13-4	Q3LI77	160 aa		3.91	□□□□□ -1.78
LRRK1-205	ENST00000526457	XP32	Q5T750	250 aa		3.91	□□□□□ -1.78
LRRK1-205	ENST00000526457	SVEP1	Q4LDE5	3571 aa		3.9	□□□□□ -1.79
LRRK1-205	ENST00000526457	KRTAP1-4	P0C5Y4	121 aa		3.87	□□□□□ -1.79
LRRK1-205	ENST00000526457	KRTAP10-10	P60014	251 aa		3.85	□□□□□ -1.79
LRRK1-205	ENST00000526457	KRTAP12-1	P59990	96 aa		3.85	□□□□□ -1.79
LRRK1-205	ENST00000526457	CUBN	O60494	3623 aa		3.84	□□□□□ -1.8
LRRK1-205	ENST00000526457	KRTAP15-1	Q3LI76	137 aa		3.83	□□□□□ -1.8
LRRK1-205	ENST00000526457	MUC3A	Q02505	3323 aa		3.81	□□□□□ -1.8
LRRK1-205	ENST00000526457	ALMS1	Q8TCU4	4167 aa		3.8	□□□□□ -1.8
LRRK1-205	ENST00000526457	CSMD2	Q7Z408	3487 aa		3.72	□□□□□ -1.81
LRRK1-205	ENST00000526457	CMYA5	Q8N3K9	4069 aa		3.71	□□□□□ -1.82
LRRK1-205	ENST00000526457	CSMD3	Q7Z407	3707 aa		3.7	□□□□□ -1.82
LRRK1-205	ENST00000526457	LYST	Q99698	3801 aa		3.7	□□□□□ -1.82
LRRK1-205	ENST00000526457	HECTD4	Q9Y4D8	3996 aa		3.69	□□□□□ -1.82
LRRK1-205	ENST00000526457	ZNF469	Q96JG9	3925 aa	Predicted RBP	3.67	□□□□□ -1.82
LRRK1-205	ENST00000526457	DNAH7	Q8WXX0	4024 aa		3.64	□□□□□ -1.83
LRRK1-205	ENST00000526457	DNAH3	Q8TD57	4116 aa		3.64	□□□□□ -1.83
LRRK1-205	ENST00000526457	KRTAP10-6	P60371	365 aa	Predicted RBP	3.6	□□□□□ -1.83
LRRK1-205	ENST00000526457	KRTAP3-1	Q9BYR8	98 aa		3.59	□□□□□ -1.83
LRRK1-205	ENST00000526457	ANK2	Q01484	3957 aa		3.54	□□□□□ -1.84
LRRK1-205	ENST00000526457	CRCT1	Q9UGL9	99 aa		3.48	□□□□□ -1.85

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