RNA–Protein interactions for RNA: ENST00000526457.3

LRRK1-205, Transcript of leucine rich repeat kinase 1, human

TSL 1 (best)

Gene LRRK1, Length 11,632 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRK1-205	ENST00000526457	PELP1	Q8IZL8	1130 aa	Known RBP	12.88	□□□□□ -0.35
LRRK1-205	ENST00000526457	MYT1	Q01538	1121 aa		12.67	□□□□□ -0.38
LRRK1-205	ENST00000526457	ERICH6	Q7L0X2	663 aa		12.38	□□□□□ -0.43
LRRK1-205	ENST00000526457	CCER1	Q8TC90	406 aa	Predicted RBP	12.2	□□□□□ -0.46
LRRK1-205	ENST00000526457	NISCH	Q9Y2I1	1504 aa		12.12	□□□□□ -0.47
LRRK1-205	ENST00000526457	CENPB	P07199	599 aa	Predicted RBP	12.11	□□□□□ -0.47
LRRK1-205	ENST00000526457	DCAF8L2	P0C7V8	631 aa		12.08	□□□□□ -0.48
LRRK1-205	ENST00000526457	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.99	□□□□□ -0.49
LRRK1-205	ENST00000526457	SUPT5H	O00267	1087 aa	Known RBP	11.82	□□□□□ -0.52
LRRK1-205	ENST00000526457	NEFL	P07196	543 aa		11.82	□□□□□ -0.52
LRRK1-205	ENST00000526457	YTHDC1	Q96MU7	727 aa	Known RBP	11.8	□□□□□ -0.52
LRRK1-205	ENST00000526457	PCGF6	Q9BYE7	350 aa		11.76	□□□□□ -0.53
LRRK1-205	ENST00000526457	EHMT2	Q96KQ7	1210 aa		11.73	□□□□□ -0.53
LRRK1-205	ENST00000526457	ZEB1	P37275	1124 aa	Predicted RBP	11.72	□□□□□ -0.53
LRRK1-205	ENST00000526457	DAXX	Q9UER7	740 aa	Predicted RBP	11.62	□□□□□ -0.55
LRRK1-205	ENST00000526457	APLP2	Q06481	763 aa		11.61	□□□□□ -0.55
LRRK1-205	ENST00000526457	RTL5	Q5HYW3	569 aa	Predicted RBP	11.51	□□□□□ -0.57
LRRK1-205	ENST00000526457	SHROOM4	Q9ULL8	1493 aa		11.4	□□□□□ -0.59
LRRK1-205	ENST00000526457	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.33	□□□□□ -0.6
LRRK1-205	ENST00000526457	HRC	P23327	699 aa		11.25	□□□□□ -0.61
LRRK1-205	ENST00000526457	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.23	□□□□□ -0.61
LRRK1-205	ENST00000526457	GLIPR1L2	Q4G1C9	344 aa		11.23	□□□□□ -0.61
LRRK1-205	ENST00000526457	EIF5B	O60841	1220 aa	Known RBP	11.22	□□□□□ -0.61
LRRK1-205	ENST00000526457	RANGAP1	P46060	587 aa	Predicted RBP	11.19	□□□□□ -0.62
LRRK1-205	ENST00000526457	CLSPN	Q9HAW4	1339 aa		11.09	□□□□□ -0.63
LRRK1-205	ENST00000526457	GTF3C3	Q9Y5Q9	886 aa		11.05	□□□□□ -0.64
LRRK1-205	ENST00000526457	TRIM26	Q12899	539 aa	Predicted RBP	11.03	□□□□□ -0.64
LRRK1-205	ENST00000526457	BCAN	Q96GW7	911 aa		10.99	□□□□□ -0.65
LRRK1-205	ENST00000526457	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.99	□□□□□ -0.65
LRRK1-205	ENST00000526457	DIEXF	Q68CQ4	756 aa	Known RBP	10.97	□□□□□ -0.65
LRRK1-205	ENST00000526457	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.97	□□□□□ -0.65
LRRK1-205	ENST00000526457	POLR3GL	Q9BT43	218 aa		10.95	□□□□□ -0.66
LRRK1-205	ENST00000526457	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.94	□□□□□ -0.66
LRRK1-205	ENST00000526457	MYT1L	Q9UL68	1186 aa		10.9	□□□□□ -0.67
LRRK1-205	ENST00000526457	ANP32A	P39687	249 aa	Known RBP	10.89	□□□□□ -0.67
LRRK1-205	ENST00000526457	UBTF	P17480	764 aa	Known RBP	10.88	□□□□□ -0.67
LRRK1-205	ENST00000526457	TRIM41	Q8WV44	630 aa		10.87	□□□□□ -0.67
LRRK1-205	ENST00000526457	CNGB1	Q14028	1251 aa	Predicted RBP	10.86	□□□□□ -0.67
LRRK1-205	ENST00000526457	ANP32B	Q92688	251 aa	Known RBP	10.85	□□□□□ -0.67
LRRK1-205	ENST00000526457	ACIN1	Q9UKV3	1341 aa	Known RBP	10.79	□□□□□ -0.68
LRRK1-205	ENST00000526457	TNNT2	P45379	298 aa	Predicted RBP	10.75	□□□□□ -0.69
LRRK1-205	ENST00000526457	NPM2	Q86SE8	214 aa	Known RBP	10.75	□□□□□ -0.69
LRRK1-205	ENST00000526457	NBR1	Q14596	966 aa		10.74	□□□□□ -0.69
LRRK1-205	ENST00000526457	SLC24A1	O60721	1099 aa		10.71	□□□□□ -0.7
LRRK1-205	ENST00000526457	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.7	□□□□□ -0.7
LRRK1-205	ENST00000526457	ITGAE	P38570	1179 aa		10.69	□□□□□ -0.7
LRRK1-205	ENST00000526457	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.68	□□□□□ -0.7
LRRK1-205	ENST00000526457	HNRNPUL2	Q1KMD3	747 aa	Known RBP	10.68	□□□□□ -0.7
LRRK1-205	ENST00000526457	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.64	□□□□□ -0.71
LRRK1-205	ENST00000526457	DCAF1	Q9Y4B6	1507 aa		10.63	□□□□□ -0.71
LRRK1-205	ENST00000526457	ARX	Q96QS3	562 aa		10.63	□□□□□ -0.71
LRRK1-205	ENST00000526457	ANP32C	O43423	234 aa		10.62	□□□□□ -0.71
LRRK1-205	ENST00000526457	CDK11B	P21127	795 aa	Known RBP	10.62	□□□□□ -0.71
LRRK1-205	ENST00000526457	HSP90AA1	P07900	732 aa	Known RBP	10.61	□□□□□ -0.71
LRRK1-205	ENST00000526457	BCL11A	Q9H165	835 aa		10.61	□□□□□ -0.71
LRRK1-205	ENST00000526457	CANX	P27824	592 aa	Known RBP	10.6	□□□□□ -0.71
LRRK1-205	ENST00000526457	CCDC180	Q9P1Z9	1646 aa		10.55	□□□□□ -0.72
LRRK1-205	ENST00000526457	FKBP8	Q14318	412 aa		10.53	□□□□□ -0.72
LRRK1-205	ENST00000526457	ANP32E	Q9BTT0	268 aa		10.53	□□□□□ -0.72
LRRK1-205	ENST00000526457	CHIC1	Q5VXU3	224 aa		10.53	□□□□□ -0.72
LRRK1-205	ENST00000526457	UPF2	Q9HAU5	1272 aa	Known RBP	10.52	□□□□□ -0.73
LRRK1-205	ENST00000526457	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.51	□□□□□ -0.73
LRRK1-205	ENST00000526457	SCAF1	Q9H7N4	1312 aa	Known RBP	10.5	□□□□□ -0.73
LRRK1-205	ENST00000526457	TRIM44	Q96DX7	344 aa	Predicted RBP	10.5	□□□□□ -0.73
LRRK1-205	ENST00000526457	RTN4	Q9NQC3	1192 aa	Known RBP	10.49	□□□□□ -0.73
LRRK1-205	ENST00000526457	LOC105371045	A0A1W2PR82	267 aa		10.48	□□□□□ -0.73
LRRK1-205	ENST00000526457	ERICH6B	Q5W0A0	696 aa		10.48	□□□□□ -0.73
LRRK1-205	ENST00000526457	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.47	□□□□□ -0.73
LRRK1-205	ENST00000526457	NCL	P19338	710 aa	Known RBP	10.45	□□□□□ -0.74
LRRK1-205	ENST00000526457	NEFM	P07197	916 aa		10.43	□□□□□ -0.74
LRRK1-205	ENST00000526457	NEUROD1	Q13562	356 aa		10.42	□□□□□ -0.74
LRRK1-205	ENST00000526457	CCDC136	Q96JN2	1154 aa		10.37	□□□□□ -0.75
LRRK1-205	ENST00000526457	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.36	□□□□□ -0.75
LRRK1-205	ENST00000526457	PTMA	P06454	111 aa	Known RBP	10.36	□□□□□ -0.75
LRRK1-205	ENST00000526457	DDRGK1	Q96HY6	314 aa		10.34	□□□□□ -0.75
LRRK1-205	ENST00000526457	ZNF326	Q5BKZ1	582 aa	Known RBP	10.32	□□□□□ -0.76
LRRK1-205	ENST00000526457	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.31	□□□□□ -0.76
LRRK1-205	ENST00000526457	FAM50A	Q14320	339 aa	Known RBP	10.31	□□□□□ -0.76
LRRK1-205	ENST00000526457	BECN1	Q14457	450 aa		10.31	□□□□□ -0.76
LRRK1-205	ENST00000526457	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
LRRK1-205	ENST00000526457	TRIM52	Q96A61	297 aa		10.28	□□□□□ -0.76
LRRK1-205	ENST00000526457	GOLGA6L22	H0YM25	854 aa		10.27	□□□□□ -0.76
LRRK1-205	ENST00000526457	DEK	P35659	375 aa	Known RBP	10.27	□□□□□ -0.76
LRRK1-205	ENST00000526457	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.26	□□□□□ -0.77
LRRK1-205	ENST00000526457	PPM1G	O15355	546 aa	Predicted RBP	10.24	□□□□□ -0.77
LRRK1-205	ENST00000526457	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.24	□□□□□ -0.77
LRRK1-205	ENST00000526457	LAS1L	Q9Y4W2	734 aa	Known RBP	10.23	□□□□□ -0.77
LRRK1-205	ENST00000526457	TNNT3	P45378	269 aa	Predicted RBP	10.22	□□□□□ -0.77
LRRK1-205	ENST00000526457	IRX6	P78412	446 aa	Predicted RBP	10.22	□□□□□ -0.77
LRRK1-205	ENST00000526457	NOP58	Q9Y2X3	529 aa	Known RBP	10.22	□□□□□ -0.77
LRRK1-205	ENST00000526457	CHAF1A	Q13111	956 aa	Predicted RBP	10.2	□□□□□ -0.78
LRRK1-205	ENST00000526457	FAM9B	Q8IZU0	186 aa		10.18	□□□□□ -0.78
LRRK1-205	ENST00000526457	ARID3A	Q99856	593 aa		10.17	□□□□□ -0.78
LRRK1-205	ENST00000526457	ZRSR1	Q15695	479 aa	Known RBP	10.15	□□□□□ -0.78
LRRK1-205	ENST00000526457	L1TD1	Q5T7N2	865 aa	Known RBP	10.15	□□□□□ -0.79
LRRK1-205	ENST00000526457	MSN	P26038	577 aa	Known RBP	10.15	□□□□□ -0.79
LRRK1-205	ENST00000526457	CALR	P27797	417 aa	Known RBP	10.13	□□□□□ -0.79
LRRK1-205	ENST00000526457	GOLGA6L6	A8MZA4	724 aa		10.11	□□□□□ -0.79
LRRK1-205	ENST00000526457	SALL2	Q9Y467	1007 aa	Predicted RBP	10.11	□□□□□ -0.79
LRRK1-205	ENST00000526457	ZCCHC6	Q5VYS8	1495 aa	Known RBP	10.11	□□□□□ -0.79

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