RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 SMIM26A0A096LP01 95 aa9.26□□□□□ -0.93
USH1C-204ENST00000526313 CDK2AP2O75956 126 aa9.25□□□□□ -0.93
USH1C-204ENST00000526313 IGHV6-1A0A0B4J1U7 121 aa9.25□□□□□ -0.93
USH1C-204ENST00000526313 MP68P56378 58 aa9.24□□□□□ -0.93
USH1C-204ENST00000526313 H3BPC8 53 aa9.23□□□□□ -0.93
USH1C-204ENST00000526313 RYR2Q92736 4967 aa9.22□□□□□ -0.93
USH1C-204ENST00000526313 H0Y9P7 68 aa9.21□□□□□ -0.94
USH1C-204ENST00000526313 SPINK6Q6UWN8 80 aa9.21□□□□□ -0.94
USH1C-204ENST00000526313 NOTCH2NLQ7Z3S9 236 aa9.21□□□□□ -0.94
USH1C-204ENST00000526313 TP53AIP1Q9HCN2 124 aa9.21□□□□□ -0.94
USH1C-204ENST00000526313 MRPL34Q9BQ48 92 aaKnown RBP9.19□□□□□ -0.94
USH1C-204ENST00000526313 PLA2G1BP04054 148 aaKnown RBP9.19□□□□□ -0.94
USH1C-204ENST00000526313 FP248Q71RG6 208 aaPredicted RBP9.19□□□□□ -0.94
USH1C-204ENST00000526313 LINC00208Q96KT6 92 aa9.19□□□□□ -0.94
USH1C-204ENST00000526313 TRAV22A0A0B4J277 110 aa9.17□□□□□ -0.94
USH1C-204ENST00000526313 APOBP04114 4563 aaKnown RBP9.17□□□□□ -0.94
USH1C-204ENST00000526313 C1orf195Q5TG92 126 aa9.16□□□□□ -0.94
USH1C-204ENST00000526313 C8orf87E5RJ46 101 aa9.14□□□□□ -0.95
USH1C-204ENST00000526313 KRTAP10-4P60372 401 aaPredicted RBP9.13□□□□□ -0.95
USH1C-204ENST00000526313 C1orf64Q8NEQ6 169 aa9.13□□□□□ -0.95
USH1C-204ENST00000526313 TYMSOSQ8TAI1 123 aa9.13□□□□□ -0.95
USH1C-204ENST00000526313 KMT2CQ8NEZ4 4911 aaKnown RBP9.12□□□□□ -0.95
USH1C-204ENST00000526313 LIMD2Q9BT23 127 aa9.12□□□□□ -0.95
USH1C-204ENST00000526313 SMR3BP02814 79 aaPredicted RBP9.11□□□□□ -0.95
USH1C-204ENST00000526313 SPINK1P00995 79 aa9.1□□□□□ -0.95
USH1C-204ENST00000526313 CYP4F30PQ9H0H9 118 aa9.1□□□□□ -0.95
USH1C-204ENST00000526313 NDUFS5O43920 106 aa9.08□□□□□ -0.96
USH1C-204ENST00000526313 SPANXA2-OT1Q8N9U9 137 aa9.08□□□□□ -0.96
USH1C-204ENST00000526313 C4orf48Q5BLP8 95 aa9.07□□□□□ -0.96
USH1C-204ENST00000526313 LINC00313P59037 77 aa9.07□□□□□ -0.96
USH1C-204ENST00000526313 MPLKIPQ8TAP9 179 aa9.07□□□□□ -0.96
USH1C-204ENST00000526313 FAT1Q14517 4588 aa9.06□□□□□ -0.96
USH1C-204ENST00000526313 RPS29P62273 56 aaKnown RBP9.06□□□□□ -0.96
USH1C-204ENST00000526313 KRTAP13-3Q3SY46 172 aa9.05□□□□□ -0.96
USH1C-204ENST00000526313 PRR26Q8N8Z3 221 aa9.05□□□□□ -0.96
USH1C-204ENST00000526313 Q8N9P0 234 aaPredicted RBP9.03□□□□□ -0.96
USH1C-204ENST00000526313 SPAG11AQ6PDA7 123 aa9.02□□□□□ -0.96
USH1C-204ENST00000526313 LINC00304Q8N9R0 145 aa9.02□□□□□ -0.97
USH1C-204ENST00000526313 PRO0628Q9UI54 55 aa9.02□□□□□ -0.97
USH1C-204ENST00000526313 PKHD1L1Q86WI1 4243 aa9.01□□□□□ -0.97
USH1C-204ENST00000526313 KRTAP16-1A8MUX0 517 aa9.01□□□□□ -0.97
USH1C-204ENST00000526313 Q5W150 140 aa9.01□□□□□ -0.97
USH1C-204ENST00000526313 IGLV7-46A0A075B6I9 117 aa8.98□□□□□ -0.97
USH1C-204ENST00000526313 PRR4Q16378 134 aa8.98□□□□□ -0.97
USH1C-204ENST00000526313 LOC101927531A0A1B0GV80 90 aa8.95□□□□□ -0.98
USH1C-204ENST00000526313 BRK1Q8WUW1 75 aa8.94□□□□□ -0.98
USH1C-204ENST00000526313 PCOTHQ58A44 107 aa8.93□□□□□ -0.98
USH1C-204ENST00000526313 FAM229AH3BQW9 127 aa8.92□□□□□ -0.98
USH1C-204ENST00000526313 Q1T7F1 81 aa8.9□□□□□ -0.98
USH1C-204ENST00000526313 RYR3Q15413 4870 aa8.88□□□□□ -0.99
USH1C-204ENST00000526313 HSPG2P98160 4391 aa8.86□□□□□ -0.99
USH1C-204ENST00000526313 IGKV2-30P06310 120 aa8.83□□□□□ -1
USH1C-204ENST00000526313 V9GYY9 64 aa8.82□□□□□ -1
USH1C-204ENST00000526313 PSPHP1O15172 72 aa8.8□□□□□ -1
USH1C-204ENST00000526313 COA5Q86WW8 74 aa8.8□□□□□ -1
USH1C-204ENST00000526313 RETNLBQ9BQ08 111 aa8.79□□□□□ -1
USH1C-204ENST00000526313 RYR1P21817 5038 aa8.78□□□□□ -1
USH1C-204ENST00000526313 KRTAP10-8P60410 259 aa8.78□□□□□ -1
USH1C-204ENST00000526313 Q5VSD8 79 aa8.78□□□□□ -1
USH1C-204ENST00000526313 TNXBP22105 4242 aa8.77□□□□□ -1.01
USH1C-204ENST00000526313 HRES1P13985 223 aa8.75□□□□□ -1.01
USH1C-204ENST00000526313 FLG2Q5D862 2391 aaPredicted RBP8.74□□□□□ -1.01
USH1C-204ENST00000526313 Q8N1X5 172 aa8.73□□□□□ -1.01
USH1C-204ENST00000526313 KRTAP17-1Q9BYP8 105 aa8.73□□□□□ -1.01
USH1C-204ENST00000526313 A8MUN3 132 aa8.72□□□□□ -1.01
USH1C-204ENST00000526313 A8MUU9 505 aa8.72□□□□□ -1.01
USH1C-204ENST00000526313 C20orf166-AS1Q96NR2 134 aa8.72□□□□□ -1.01
USH1C-204ENST00000526313 LRP1Q07954 4544 aaKnown RBP8.72□□□□□ -1.01
USH1C-204ENST00000526313 DMAC1Q96GE9 116 aa8.7□□□□□ -1.02
USH1C-204ENST00000526313 FAT3Q8TDW7 4589 aa8.68□□□□□ -1.02
USH1C-204ENST00000526313 IGKV2D-30A0A075B6S6 120 aa8.67□□□□□ -1.02
USH1C-204ENST00000526313 C9orf92A6NGG3 77 aa8.67□□□□□ -1.02
USH1C-204ENST00000526313 ACYP2P14621 99 aa8.66□□□□□ -1.02
USH1C-204ENST00000526313 Q5VV11 94 aa8.66□□□□□ -1.02
USH1C-204ENST00000526313 PRR15LQ9BU68 103 aa8.65□□□□□ -1.03
USH1C-204ENST00000526313 C7orf65Q6ZTY9 151 aa8.62□□□□□ -1.03
USH1C-204ENST00000526313 CHKB-CPT1BH3BT56 60 aa8.62□□□□□ -1.03
USH1C-204ENST00000526313 KIAA1109Q2LD37 5005 aa8.59□□□□□ -1.03
USH1C-204ENST00000526313 Q75L30 129 aa8.58□□□□□ -1.04
USH1C-204ENST00000526313 LINC01558Q9Y6Z2 57 aa8.57□□□□□ -1.04
USH1C-204ENST00000526313 MT1HL1P0DM35 61 aa8.56□□□□□ -1.04
USH1C-204ENST00000526313 EPPK1P58107 5090 aaKnown RBP8.52□□□□□ -1.05
USH1C-204ENST00000526313 A6NED7 52 aa8.51□□□□□ -1.05
USH1C-204ENST00000526313 DMBT1Q9UGM3 2413 aaPredicted RBP8.5□□□□□ -1.05
USH1C-204ENST00000526313 A8MU10 97 aa8.5□□□□□ -1.05
USH1C-204ENST00000526313 MYCBP2O75592 4640 aa8.48□□□□□ -1.05
USH1C-204ENST00000526313 SPINK7P58062 85 aa8.47□□□□□ -1.05
USH1C-204ENST00000526313 PMAIP1Q13794 54 aa8.47□□□□□ -1.05
USH1C-204ENST00000526313 LCA10Q71F78 164 aa8.43□□□□□ -1.06
USH1C-204ENST00000526313 RPL37P61927 97 aaKnown RBP8.42□□□□□ -1.06
USH1C-204ENST00000526313 SPTSSBQ8NFR3 76 aa8.42□□□□□ -1.06
USH1C-204ENST00000526313 XP32Q5T750 250 aa8.41□□□□□ -1.06
USH1C-204ENST00000526313 CDC42SE1Q9NRR8 79 aa8.41□□□□□ -1.06
USH1C-204ENST00000526313 ATP11AUNQ6ZP68 121 aa8.4□□□□□ -1.06
USH1C-204ENST00000526313 KRTAP3-1Q9BYR8 98 aa8.4□□□□□ -1.06
USH1C-204ENST00000526313 KRTAP4-5Q9BYR2 181 aa8.35□□□□□ -1.07
USH1C-204ENST00000526313 COX6B2Q6YFQ2 88 aa8.32□□□□□ -1.08
USH1C-204ENST00000526313 A0A1B0GU69 56 aa8.28□□□□□ -1.08
USH1C-204ENST00000526313 TPRXLQ17RH7 258 aa8.27□□□□□ -1.08
USH1C-204ENST00000526313 KTN1-AS1Q86SY8 53 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms