RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CIRBP-AS1Q8TBR5 109 aa12.51□□□□□ -0.41
VPS28-205ENST00000526204 A0A087X002 238 aa12.48□□□□□ -0.41
VPS28-205ENST00000526204 NOTCH2NLQ7Z3S9 236 aa12.48□□□□□ -0.41
VPS28-205ENST00000526204 KRTAP10-2P60368 255 aa12.47□□□□□ -0.41
VPS28-205ENST00000526204 DNAH8Q96JB1 4490 aa12.46□□□□□ -0.41
VPS28-205ENST00000526204 PCOTHQ58A44 107 aa12.46□□□□□ -0.41
VPS28-205ENST00000526204 SPINK6Q6UWN8 80 aa12.46□□□□□ -0.41
VPS28-205ENST00000526204 FRAS1Q86XX4 4008 aa12.46□□□□□ -0.42
VPS28-205ENST00000526204 C1orf195Q5TG92 126 aa12.44□□□□□ -0.42
VPS28-205ENST00000526204 PSPHP1O15172 72 aa12.43□□□□□ -0.42
VPS28-205ENST00000526204 COA5Q86WW8 74 aa12.41□□□□□ -0.42
VPS28-205ENST00000526204 C8orf87E5RJ46 101 aa12.4□□□□□ -0.42
VPS28-205ENST00000526204 Q6ZSA8 131 aa12.4□□□□□ -0.42
VPS28-205ENST00000526204 LIMD2Q9BT23 127 aa12.39□□□□□ -0.43
VPS28-205ENST00000526204 Q8N9P0 234 aaPredicted RBP12.38□□□□□ -0.43
VPS28-205ENST00000526204 LOC101927531A0A1B0GV80 90 aa12.38□□□□□ -0.43
VPS28-205ENST00000526204 A8MUN3 132 aa12.35□□□□□ -0.43
VPS28-205ENST00000526204 KRTAP10-1P60331 282 aa12.33□□□□□ -0.44
VPS28-205ENST00000526204 KRTAP13-3Q3SY46 172 aa12.31□□□□□ -0.44
VPS28-205ENST00000526204 KRTAP13-2Q52LG2 175 aa12.31□□□□□ -0.44
VPS28-205ENST00000526204 Q5W150 140 aa12.3□□□□□ -0.44
VPS28-205ENST00000526204 DNAH6Q9C0G6 4158 aa12.29□□□□□ -0.44
VPS28-205ENST00000526204 Q5VV11 94 aa12.29□□□□□ -0.44
VPS28-205ENST00000526204 LINC00313P59037 77 aa12.28□□□□□ -0.44
VPS28-205ENST00000526204 ALMS1Q8TCU4 4167 aa12.25□□□□□ -0.45
VPS28-205ENST00000526204 PRR15LQ9BU68 103 aa12.23□□□□□ -0.45
VPS28-205ENST00000526204 HYDINQ4G0P3 5121 aa12.22□□□□□ -0.45
VPS28-205ENST00000526204 HRES1P13985 223 aa12.22□□□□□ -0.45
VPS28-205ENST00000526204 DNAH11Q96DT5 4516 aa12.21□□□□□ -0.45
VPS28-205ENST00000526204 FAM229AH3BQW9 127 aa12.2□□□□□ -0.46
VPS28-205ENST00000526204 DNAH5Q8TE73 4624 aa12.2□□□□□ -0.46
VPS28-205ENST00000526204 KRTAP1-4P0C5Y4 121 aa12.2□□□□□ -0.46
VPS28-205ENST00000526204 CHKB-CPT1BH3BT56 60 aa12.19□□□□□ -0.46
VPS28-205ENST00000526204 Q75L30 129 aa12.17□□□□□ -0.46
VPS28-205ENST00000526204 LINC01558Q9Y6Z2 57 aa12.16□□□□□ -0.46
VPS28-205ENST00000526204 SPAG11AQ6PDA7 123 aa12.13□□□□□ -0.47
VPS28-205ENST00000526204 ACYP2P14621 99 aa12.11□□□□□ -0.47
VPS28-205ENST00000526204 C4orf48Q5BLP8 95 aa12.11□□□□□ -0.47
VPS28-205ENST00000526204 PLA2G1BP04054 148 aaKnown RBP12.1□□□□□ -0.47
VPS28-205ENST00000526204 PKD1P98161 4303 aa12.1□□□□□ -0.47
VPS28-205ENST00000526204 KRTAP16-1A8MUX0 517 aa12.09□□□□□ -0.47
VPS28-205ENST00000526204 TYMSOSQ8TAI1 123 aa12.07□□□□□ -0.48
VPS28-205ENST00000526204 SPINK1P00995 79 aa12.06□□□□□ -0.48
VPS28-205ENST00000526204 IGKV2-30P06310 120 aa12.06□□□□□ -0.48
VPS28-205ENST00000526204 LRP1BQ9NZR2 4599 aa12.06□□□□□ -0.48
VPS28-205ENST00000526204 DMAC1Q96GE9 116 aa12.05□□□□□ -0.48
VPS28-205ENST00000526204 A6NED7 52 aa12.03□□□□□ -0.48
VPS28-205ENST00000526204 FAT2Q9NYQ8 4349 aa12.03□□□□□ -0.48
VPS28-205ENST00000526204 RETNLBQ9BQ08 111 aa12.02□□□□□ -0.49
VPS28-205ENST00000526204 SACSQ9NZJ4 4579 aa11.99□□□□□ -0.49
VPS28-205ENST00000526204 PRR26Q8N8Z3 221 aa11.99□□□□□ -0.49
VPS28-205ENST00000526204 A8MU10 97 aa11.97□□□□□ -0.49
VPS28-205ENST00000526204 RPS29P62273 56 aaKnown RBP11.95□□□□□ -0.5
VPS28-205ENST00000526204 LCA10Q71F78 164 aa11.95□□□□□ -0.5
VPS28-205ENST00000526204 VPS13BQ7Z7G8 4022 aa11.93□□□□□ -0.5
VPS28-205ENST00000526204 CDC42SE1Q9NRR8 79 aa11.93□□□□□ -0.5
VPS28-205ENST00000526204 ATP11AUNQ6ZP68 121 aa11.9□□□□□ -0.5
VPS28-205ENST00000526204 LINC00304Q8N9R0 145 aa11.9□□□□□ -0.5
VPS28-205ENST00000526204 PMAIP1Q13794 54 aa11.88□□□□□ -0.51
VPS28-205ENST00000526204 IGKV2D-30A0A075B6S6 120 aa11.87□□□□□ -0.51
VPS28-205ENST00000526204 SPTSSBQ8NFR3 76 aa11.83□□□□□ -0.52
VPS28-205ENST00000526204 SPINK7P58062 85 aa11.83□□□□□ -0.52
VPS28-205ENST00000526204 PKHD1P08F94 4074 aa11.81□□□□□ -0.52
VPS28-205ENST00000526204 KMT2CQ8NEZ4 4911 aaKnown RBP11.77□□□□□ -0.52
VPS28-205ENST00000526204 SMR3BP02814 79 aaPredicted RBP11.76□□□□□ -0.53
VPS28-205ENST00000526204 C7orf65Q6ZTY9 151 aa11.76□□□□□ -0.53
VPS28-205ENST00000526204 A0A1B0GU69 56 aa11.72□□□□□ -0.53
VPS28-205ENST00000526204 A0A1B0GVY2 172 aa11.72□□□□□ -0.53
VPS28-205ENST00000526204 RYR2Q92736 4967 aa11.71□□□□□ -0.53
VPS28-205ENST00000526204 A6NN06 94 aa11.66□□□□□ -0.54
VPS28-205ENST00000526204 KRTAP10-4P60372 401 aaPredicted RBP11.66□□□□□ -0.54
VPS28-205ENST00000526204 C20orf166-AS1Q96NR2 134 aa11.63□□□□□ -0.55
VPS28-205ENST00000526204 DYNC1H1Q14204 4646 aaKnown RBP11.62□□□□□ -0.55
VPS28-205ENST00000526204 KTN1-AS1Q86SY8 53 aa11.62□□□□□ -0.55
VPS28-205ENST00000526204 A8MUU9 505 aa11.61□□□□□ -0.55
VPS28-205ENST00000526204 C9orf92A6NGG3 77 aa11.57□□□□□ -0.56
VPS28-205ENST00000526204 Q8N1X5 172 aa11.56□□□□□ -0.56
VPS28-205ENST00000526204 UQCR11O14957 56 aa11.53□□□□□ -0.56
VPS28-205ENST00000526204 SPATA8Q6RVD6 105 aa11.53□□□□□ -0.56
VPS28-205ENST00000526204 APOBP04114 4563 aaKnown RBP11.48□□□□□ -0.57
VPS28-205ENST00000526204 MIR22HGQ0VDD5 57 aa11.47□□□□□ -0.57
VPS28-205ENST00000526204 RYR3Q15413 4870 aa11.46□□□□□ -0.57
VPS28-205ENST00000526204 SEC61GP60059 68 aa11.44□□□□□ -0.58
VPS28-205ENST00000526204 FAT1Q14517 4588 aa11.43□□□□□ -0.58
VPS28-205ENST00000526204 PKHD1L1Q86WI1 4243 aa11.42□□□□□ -0.58
VPS28-205ENST00000526204 KRTAP3-1Q9BYR8 98 aa11.34□□□□□ -0.59
VPS28-205ENST00000526204 KRTAP10-8P60410 259 aa11.26□□□□□ -0.61
VPS28-205ENST00000526204 FLG2Q5D862 2391 aaPredicted RBP11.25□□□□□ -0.61
VPS28-205ENST00000526204 RBM12B-AS1Q9P1G2 102 aa11.24□□□□□ -0.61
VPS28-205ENST00000526204 COX6B2Q6YFQ2 88 aa11.23□□□□□ -0.61
VPS28-205ENST00000526204 Q5VSD8 79 aa11.18□□□□□ -0.62
VPS28-205ENST00000526204 HSPG2P98160 4391 aa11.15□□□□□ -0.62
VPS28-205ENST00000526204 A0A1B0GU33 70 aa11.12□□□□□ -0.63
VPS28-205ENST00000526204 RPL37P61927 97 aaKnown RBP11.09□□□□□ -0.63
VPS28-205ENST00000526204 RYR1P21817 5038 aa11.09□□□□□ -0.63
VPS28-205ENST00000526204 H0YAA0 97 aa11.08□□□□□ -0.64
VPS28-205ENST00000526204 H1FX-AS1Q4G0G2 97 aa11.06□□□□□ -0.64
VPS28-205ENST00000526204 EPPK1P58107 5090 aaKnown RBP11.04□□□□□ -0.64
VPS28-205ENST00000526204 KIAA1109Q2LD37 5005 aa11.04□□□□□ -0.64
VPS28-205ENST00000526204 TNXBP22105 4242 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms