RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 CRIPTQ9P021 101 aa3.96□□□□□ -1.78
CPNE3-203ENST00000517490 CELSR1Q9NYQ6 3014 aa3.96□□□□□ -1.78
CPNE3-203ENST00000517490 MAST4O15021 2626 aa3.95□□□□□ -1.78
CPNE3-203ENST00000517490 BAHCC1Q9P281 2608 aa3.95□□□□□ -1.78
CPNE3-203ENST00000517490 BSNQ9UPA5 3926 aa3.95□□□□□ -1.78
CPNE3-203ENST00000517490 CRYBG3Q68DQ2 2970 aa3.95□□□□□ -1.78
CPNE3-203ENST00000517490 PANO1I0J062 215 aa3.95□□□□□ -1.78
CPNE3-203ENST00000517490 A0A087X002 238 aa3.94□□□□□ -1.78
CPNE3-203ENST00000517490 NOTCH2NLQ7Z3S9 236 aa3.94□□□□□ -1.78
CPNE3-203ENST00000517490 SPATA8Q6RVD6 105 aa3.94□□□□□ -1.78
CPNE3-203ENST00000517490 NIPBLQ6KC79 2804 aaeCLIP3.92□□□□□ -1.78
CPNE3-203ENST00000517490 CELSR2Q9HCU4 2923 aa3.92□□□□□ -1.78
CPNE3-203ENST00000517490 Q8N1X5 172 aa3.92□□□□□ -1.78
CPNE3-203ENST00000517490 NOTCH1P46531 2555 aa3.91□□□□□ -1.78
CPNE3-203ENST00000517490 FLNBO75369 2602 aaKnown RBP3.91□□□□□ -1.78
CPNE3-203ENST00000517490 MGAM2Q2M2H8 2515 aa3.9□□□□□ -1.78
CPNE3-203ENST00000517490 CSAG1Q6PB30 78 aa3.9□□□□□ -1.79
CPNE3-203ENST00000517490 ITPR2Q14571 2701 aa3.9□□□□□ -1.79
CPNE3-203ENST00000517490 LINC00304Q8N9R0 145 aa3.89□□□□□ -1.79
CPNE3-203ENST00000517490 KMT2BQ9UMN6 2715 aaPredicted RBP3.89□□□□□ -1.79
CPNE3-203ENST00000517490 Q6ZRN7 208 aaPredicted RBP3.88□□□□□ -1.79
CPNE3-203ENST00000517490 A0A1B0GU33 70 aa3.88□□□□□ -1.79
CPNE3-203ENST00000517490 NSD1Q96L73 2696 aaPredicted RBP3.87□□□□□ -1.79
CPNE3-203ENST00000517490 HIVEP1P15822 2718 aa3.86□□□□□ -1.79
CPNE3-203ENST00000517490 STAB1Q9NY15 2570 aa3.86□□□□□ -1.79
CPNE3-203ENST00000517490 NBEAL1Q6ZS30 2694 aa3.85□□□□□ -1.79
CPNE3-203ENST00000517490 COL6A5A8TX70 2615 aa3.84□□□□□ -1.79
CPNE3-203ENST00000517490 ADM2Q7Z4H4 148 aa3.84□□□□□ -1.79
CPNE3-203ENST00000517490 C9orf92A6NGG3 77 aa3.83□□□□□ -1.8
CPNE3-203ENST00000517490 M0R2T5 61 aa3.78□□□□□ -1.8
CPNE3-203ENST00000517490 H1FX-AS1Q4G0G2 97 aa3.78□□□□□ -1.8
CPNE3-203ENST00000517490 TENM3Q9P273 2699 aa3.78□□□□□ -1.8
CPNE3-203ENST00000517490 KRTAP13-3Q3SY46 172 aa3.77□□□□□ -1.81
CPNE3-203ENST00000517490 VWFP04275 2813 aa3.77□□□□□ -1.81
CPNE3-203ENST00000517490 PDZD2O15018 2839 aa3.77□□□□□ -1.81
CPNE3-203ENST00000517490 KRTAP13-2Q52LG2 175 aa3.76□□□□□ -1.81
CPNE3-203ENST00000517490 KRTAP25-1Q3LHN0 102 aa3.76□□□□□ -1.81
CPNE3-203ENST00000517490 KRTAP10-2P60368 255 aa3.75□□□□□ -1.81
CPNE3-203ENST00000517490 STAB2Q8WWQ8 2551 aa3.75□□□□□ -1.81
CPNE3-203ENST00000517490 TENM1Q9UKZ4 2725 aa3.75□□□□□ -1.81
CPNE3-203ENST00000517490 ANK3Q12955 4377 aaKnown RBP3.75□□□□□ -1.81
CPNE3-203ENST00000517490 A0A0D9SG42 100 aa3.75□□□□□ -1.81
CPNE3-203ENST00000517490 Q6ZSA8 131 aa3.75□□□□□ -1.81
CPNE3-203ENST00000517490 KRTAP10-1P60331 282 aa3.74□□□□□ -1.81
CPNE3-203ENST00000517490 ROMO1P60602 79 aa3.73□□□□□ -1.81
CPNE3-203ENST00000517490 ZFHX3Q15911 3703 aa3.73□□□□□ -1.81
CPNE3-203ENST00000517490 SMR3BP02814 79 aaPredicted RBP3.72□□□□□ -1.81
CPNE3-203ENST00000517490 RPS29P62273 56 aaKnown RBP3.72□□□□□ -1.81
CPNE3-203ENST00000517490 RPL37P61927 97 aaKnown RBP3.71□□□□□ -1.81
CPNE3-203ENST00000517490 VPS13CQ709C8 3753 aa3.71□□□□□ -1.82
CPNE3-203ENST00000517490 CUBNO60494 3623 aa3.7□□□□□ -1.82
CPNE3-203ENST00000517490 CSMD2Q7Z408 3487 aa3.7□□□□□ -1.82
CPNE3-203ENST00000517490 DMBT1Q9UGM3 2413 aaPredicted RBP3.69□□□□□ -1.82
CPNE3-203ENST00000517490 C20orf166-AS1Q96NR2 134 aa3.69□□□□□ -1.82
CPNE3-203ENST00000517490 TENM4Q6N022 2769 aa3.68□□□□□ -1.82
CPNE3-203ENST00000517490 A8MUU9 505 aa3.68□□□□□ -1.82
CPNE3-203ENST00000517490 S4R3F8 94 aa3.66□□□□□ -1.82
CPNE3-203ENST00000517490 PKD1L1Q8TDX9 2849 aa3.66□□□□□ -1.82
CPNE3-203ENST00000517490 AKAP9Q99996 3911 aa3.65□□□□□ -1.82
CPNE3-203ENST00000517490 H0YAA0 97 aa3.65□□□□□ -1.82
CPNE3-203ENST00000517490 KRTAP1-4P0C5Y4 121 aa3.64□□□□□ -1.83
CPNE3-203ENST00000517490 OTOGQ6ZRI0 2925 aa3.62□□□□□ -1.83
CPNE3-203ENST00000517490 PLAC4Q8WY50 150 aa3.61□□□□□ -1.83
CPNE3-203ENST00000517490 R4GN34 69 aa3.59□□□□□ -1.83
CPNE3-203ENST00000517490 NBPF19A0A087WUL8 3843 aa3.59□□□□□ -1.83
CPNE3-203ENST00000517490 SRRM2Q9UQ35 2752 aaKnown RBP3.58□□□□□ -1.84
CPNE3-203ENST00000517490 TRRAPQ9Y4A5 3859 aa3.57□□□□□ -1.84
CPNE3-203ENST00000517490 TGP01266 2768 aa3.57□□□□□ -1.84
CPNE3-203ENST00000517490 FBN1P35555 2871 aaKnown RBP3.54□□□□□ -1.84
CPNE3-203ENST00000517490 ZNF469Q96JG9 3925 aaPredicted RBP3.54□□□□□ -1.84
CPNE3-203ENST00000517490 M0QZ58 72 aa3.5□□□□□ -1.85
CPNE3-203ENST00000517490 HUWE1Q7Z6Z7 4374 aaKnown RBP3.49□□□□□ -1.85
CPNE3-203ENST00000517490 TENM2Q9NT68 2774 aa3.48□□□□□ -1.85
CPNE3-203ENST00000517490 KRTAP3-1Q9BYR8 98 aa3.47□□□□□ -1.85
CPNE3-203ENST00000517490 Q5VSD8 79 aa3.46□□□□□ -1.86
CPNE3-203ENST00000517490 C10orf95Q9H7T3 257 aa3.46□□□□□ -1.86
CPNE3-203ENST00000517490 LCE2DQ5TA82 110 aaPredicted RBP3.41□□□□□ -1.86
CPNE3-203ENST00000517490 MEGF8Q7Z7M0 2845 aa3.41□□□□□ -1.86
CPNE3-203ENST00000517490 XP32Q5T750 250 aa3.4□□□□□ -1.86
CPNE3-203ENST00000517490 P0C880 135 aa3.4□□□□□ -1.87
CPNE3-203ENST00000517490 FBN3Q75N90 2809 aa3.4□□□□□ -1.87
CPNE3-203ENST00000517490 TPRXLQ17RH7 258 aa3.39□□□□□ -1.87
CPNE3-203ENST00000517490 PP632Q6XCG6 107 aa3.38□□□□□ -1.87
CPNE3-203ENST00000517490 DNAH10Q8IVF4 4471 aa3.37□□□□□ -1.87
CPNE3-203ENST00000517490 KRTAP10-6P60371 365 aaPredicted RBP3.37□□□□□ -1.87
CPNE3-203ENST00000517490 ALMS1Q8TCU4 4167 aa3.36□□□□□ -1.87
CPNE3-203ENST00000517490 COL7A1Q02388 2944 aa3.36□□□□□ -1.87
CPNE3-203ENST00000517490 KRTAP12-2P59991 146 aa3.35□□□□□ -1.87
CPNE3-203ENST00000517490 KRTAP13-4Q3LI77 160 aa3.35□□□□□ -1.87
CPNE3-203ENST00000517490 DNAH1Q9P2D7 4330 aa3.34□□□□□ -1.87
CPNE3-203ENST00000517490 DNAH9Q9NYC9 4486 aa3.34□□□□□ -1.88
CPNE3-203ENST00000517490 KRTAP12-1P59990 96 aa3.32□□□□□ -1.88
CPNE3-203ENST00000517490 A0A1B0GVY2 172 aa3.32□□□□□ -1.88
CPNE3-203ENST00000517490 PLECQ15149 4684 aaKnown RBP3.31□□□□□ -1.88
CPNE3-203ENST00000517490 CSMD3Q7Z407 3707 aa3.31□□□□□ -1.88
CPNE3-203ENST00000517490 KRTAP10-8P60410 259 aa3.31□□□□□ -1.88
CPNE3-203ENST00000517490 DNAH17Q9UFH2 4485 aa3.31□□□□□ -1.88
CPNE3-203ENST00000517490 DNAH8Q96JB1 4490 aa3.29□□□□□ -1.88
CPNE3-203ENST00000517490 VPS13DQ5THJ4 4388 aa3.29□□□□□ -1.88
CPNE3-203ENST00000517490 PRO2289Q9P1D8 64 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms