RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 IGLV7-46A0A075B6I9 117 aa8.68□□□□□ -1.02
NUP54-217ENST00000514987 Q1T7F1 81 aa8.68□□□□□ -1.02
NUP54-217ENST00000514987 DNAH8Q96JB1 4490 aa8.67□□□□□ -1.02
NUP54-217ENST00000514987 V9GYY9 64 aa8.65□□□□□ -1.02
NUP54-217ENST00000514987 A0A087X002 238 aa8.65□□□□□ -1.03
NUP54-217ENST00000514987 NOTCH2NLQ7Z3S9 236 aa8.65□□□□□ -1.03
NUP54-217ENST00000514987 KRTAP13-2Q52LG2 175 aa8.64□□□□□ -1.03
NUP54-217ENST00000514987 LOC101927531A0A1B0GV80 90 aa8.63□□□□□ -1.03
NUP54-217ENST00000514987 LIMD2Q9BT23 127 aa8.63□□□□□ -1.03
NUP54-217ENST00000514987 DNHD1Q96M86 4753 aa8.63□□□□□ -1.03
NUP54-217ENST00000514987 LINC00313P59037 77 aa8.6□□□□□ -1.03
NUP54-217ENST00000514987 C1orf195Q5TG92 126 aa8.6□□□□□ -1.03
NUP54-217ENST00000514987 LINC00336Q6ZUF6 198 aa8.6□□□□□ -1.03
NUP54-217ENST00000514987 KRTAP1-4P0C5Y4 121 aa8.59□□□□□ -1.03
NUP54-217ENST00000514987 PCOTHQ58A44 107 aa8.59□□□□□ -1.03
NUP54-217ENST00000514987 PRO0628Q9UI54 55 aa8.59□□□□□ -1.03
NUP54-217ENST00000514987 FRAS1Q86XX4 4008 aa8.58□□□□□ -1.04
NUP54-217ENST00000514987 C4orf48Q5BLP8 95 aa8.56□□□□□ -1.04
NUP54-217ENST00000514987 KRTAP13-3Q3SY46 172 aa8.56□□□□□ -1.04
NUP54-217ENST00000514987 DNAH11Q96DT5 4516 aa8.54□□□□□ -1.04
NUP54-217ENST00000514987 FAM229AH3BQW9 127 aa8.54□□□□□ -1.04
NUP54-217ENST00000514987 PLA2G1BP04054 148 aaKnown RBP8.54□□□□□ -1.04
NUP54-217ENST00000514987 COA5Q86WW8 74 aa8.54□□□□□ -1.04
NUP54-217ENST00000514987 Q8N9P0 234 aaPredicted RBP8.53□□□□□ -1.04
NUP54-217ENST00000514987 DNAH5Q8TE73 4624 aa8.53□□□□□ -1.04
NUP54-217ENST00000514987 SPINK1P00995 79 aa8.52□□□□□ -1.04
NUP54-217ENST00000514987 TYMSOSQ8TAI1 123 aa8.52□□□□□ -1.04
NUP54-217ENST00000514987 Q5W150 140 aa8.52□□□□□ -1.05
NUP54-217ENST00000514987 PKD1P98161 4303 aa8.5□□□□□ -1.05
NUP54-217ENST00000514987 BRK1Q8WUW1 75 aa8.49□□□□□ -1.05
NUP54-217ENST00000514987 RPS29P62273 56 aaKnown RBP8.48□□□□□ -1.05
NUP54-217ENST00000514987 SPAG11AQ6PDA7 123 aa8.47□□□□□ -1.05
NUP54-217ENST00000514987 FAT2Q9NYQ8 4349 aa8.46□□□□□ -1.06
NUP54-217ENST00000514987 KRTAP16-1A8MUX0 517 aa8.45□□□□□ -1.06
NUP54-217ENST00000514987 PSPHP1O15172 72 aa8.45□□□□□ -1.06
NUP54-217ENST00000514987 LCE2DQ5TA82 110 aaPredicted RBP8.45□□□□□ -1.06
NUP54-217ENST00000514987 HRES1P13985 223 aa8.43□□□□□ -1.06
NUP54-217ENST00000514987 A8MUN3 132 aa8.42□□□□□ -1.06
NUP54-217ENST00000514987 IGKV2-30P06310 120 aa8.41□□□□□ -1.06
NUP54-217ENST00000514987 LINC00304Q8N9R0 145 aa8.41□□□□□ -1.06
NUP54-217ENST00000514987 ACYP2P14621 99 aa8.4□□□□□ -1.06
NUP54-217ENST00000514987 A0A1B0GVY2 172 aa8.39□□□□□ -1.07
NUP54-217ENST00000514987 LRP1BQ9NZR2 4599 aa8.39□□□□□ -1.07
NUP54-217ENST00000514987 Q5VV11 94 aa8.38□□□□□ -1.07
NUP54-217ENST00000514987 PRR15LQ9BU68 103 aa8.38□□□□□ -1.07
NUP54-217ENST00000514987 LINC01558Q9Y6Z2 57 aa8.37□□□□□ -1.07
NUP54-217ENST00000514987 PRR26Q8N8Z3 221 aa8.36□□□□□ -1.07
NUP54-217ENST00000514987 DMAC1Q96GE9 116 aa8.36□□□□□ -1.07
NUP54-217ENST00000514987 HYDINQ4G0P3 5121 aa8.35□□□□□ -1.07
NUP54-217ENST00000514987 Q75L30 129 aa8.35□□□□□ -1.07
NUP54-217ENST00000514987 CHKB-CPT1BH3BT56 60 aa8.32□□□□□ -1.08
NUP54-217ENST00000514987 RETNLBQ9BQ08 111 aa8.32□□□□□ -1.08
NUP54-217ENST00000514987 VPS13BQ7Z7G8 4022 aa8.31□□□□□ -1.08
NUP54-217ENST00000514987 SMR3BP02814 79 aaPredicted RBP8.31□□□□□ -1.08
NUP54-217ENST00000514987 KRTAP10-4P60372 401 aaPredicted RBP8.27□□□□□ -1.09
NUP54-217ENST00000514987 IGKV2D-30A0A075B6S6 120 aa8.25□□□□□ -1.09
NUP54-217ENST00000514987 A6NED7 52 aa8.22□□□□□ -1.09
NUP54-217ENST00000514987 C7orf65Q6ZTY9 151 aa8.22□□□□□ -1.09
NUP54-217ENST00000514987 SACSQ9NZJ4 4579 aa8.2□□□□□ -1.1
NUP54-217ENST00000514987 C20orf166-AS1Q96NR2 134 aa8.18□□□□□ -1.1
NUP54-217ENST00000514987 A8MUU9 505 aa8.17□□□□□ -1.1
NUP54-217ENST00000514987 PKHD1P08F94 4074 aa8.17□□□□□ -1.1
NUP54-217ENST00000514987 CDC42SE1Q9NRR8 79 aa8.16□□□□□ -1.1
NUP54-217ENST00000514987 ATP11AUNQ6ZP68 121 aa8.14□□□□□ -1.11
NUP54-217ENST00000514987 LCA10Q71F78 164 aa8.12□□□□□ -1.11
NUP54-217ENST00000514987 DYNC1H1Q14204 4646 aaKnown RBP8.12□□□□□ -1.11
NUP54-217ENST00000514987 A0A1B0GU69 56 aa8.1□□□□□ -1.11
NUP54-217ENST00000514987 C9orf92A6NGG3 77 aa8.09□□□□□ -1.11
NUP54-217ENST00000514987 SPINK7P58062 85 aa8.07□□□□□ -1.12
NUP54-217ENST00000514987 A8MU10 97 aa8.06□□□□□ -1.12
NUP54-217ENST00000514987 PMAIP1Q13794 54 aa8.05□□□□□ -1.12
NUP54-217ENST00000514987 SPTSSBQ8NFR3 76 aa8.05□□□□□ -1.12
NUP54-217ENST00000514987 PKHD1L1Q86WI1 4243 aa8.05□□□□□ -1.12
NUP54-217ENST00000514987 APOBP04114 4563 aaKnown RBP8.05□□□□□ -1.12
NUP54-217ENST00000514987 KRTAP10-8P60410 259 aa8.01□□□□□ -1.13
NUP54-217ENST00000514987 Q8N1X5 172 aa8.01□□□□□ -1.13
NUP54-217ENST00000514987 RYR2Q92736 4967 aa7.98□□□□□ -1.13
NUP54-217ENST00000514987 Q5VSD8 79 aa7.98□□□□□ -1.13
NUP54-217ENST00000514987 UQCR11O14957 56 aa7.95□□□□□ -1.14
NUP54-217ENST00000514987 SEC61GP60059 68 aa7.94□□□□□ -1.14
NUP54-217ENST00000514987 SPATA8Q6RVD6 105 aa7.93□□□□□ -1.14
NUP54-217ENST00000514987 FLG2Q5D862 2391 aaPredicted RBP7.93□□□□□ -1.14
NUP54-217ENST00000514987 FAT1Q14517 4588 aa7.93□□□□□ -1.14
NUP54-217ENST00000514987 A6NN06 94 aa7.93□□□□□ -1.14
NUP54-217ENST00000514987 MIR22HGQ0VDD5 57 aa7.88□□□□□ -1.15
NUP54-217ENST00000514987 KTN1-AS1Q86SY8 53 aa7.88□□□□□ -1.15
NUP54-217ENST00000514987 COX6B2Q6YFQ2 88 aa7.87□□□□□ -1.15
NUP54-217ENST00000514987 KRTAP3-1Q9BYR8 98 aa7.87□□□□□ -1.15
NUP54-217ENST00000514987 RPL37P61927 97 aaKnown RBP7.84□□□□□ -1.15
NUP54-217ENST00000514987 KMT2CQ8NEZ4 4911 aaKnown RBP7.79□□□□□ -1.16
NUP54-217ENST00000514987 XP32Q5T750 250 aa7.77□□□□□ -1.17
NUP54-217ENST00000514987 KRTAP3-3Q9BYR6 98 aa7.76□□□□□ -1.17
NUP54-217ENST00000514987 KRTAP3-2Q9BYR7 98 aa7.76□□□□□ -1.17
NUP54-217ENST00000514987 TNXBP22105 4242 aa7.75□□□□□ -1.17
NUP54-217ENST00000514987 HSPG2P98160 4391 aa7.74□□□□□ -1.17
NUP54-217ENST00000514987 MT1HL1P0DM35 61 aa7.73□□□□□ -1.17
NUP54-217ENST00000514987 FAT3Q8TDW7 4589 aa7.7□□□□□ -1.18
NUP54-217ENST00000514987 A0A1B0GU33 70 aa7.69□□□□□ -1.18
NUP54-217ENST00000514987 H1FX-AS1Q4G0G2 97 aa7.67□□□□□ -1.18
NUP54-217ENST00000514987 KRTAP17-1Q9BYP8 105 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms