RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 PRO0628Q9UI54 55 aa9.59□□□□□ -0.87
SQSTM1-213ENST00000510187 APOBP04114 4563 aaKnown RBP9.59□□□□□ -0.87
SQSTM1-213ENST00000510187 SMR3BP02814 79 aaPredicted RBP9.59□□□□□ -0.87
SQSTM1-213ENST00000510187 MPLKIPQ8TAP9 179 aa9.58□□□□□ -0.88
SQSTM1-213ENST00000510187 ZNF861PO60384 105 aa9.57□□□□□ -0.88
SQSTM1-213ENST00000510187 CDK2AP2O75956 126 aa9.56□□□□□ -0.88
SQSTM1-213ENST00000510187 Q1T7F1 81 aa9.56□□□□□ -0.88
SQSTM1-213ENST00000510187 TP53AIP1Q9HCN2 124 aa9.56□□□□□ -0.88
SQSTM1-213ENST00000510187 EPPK1P58107 5090 aaKnown RBP9.56□□□□□ -0.88
SQSTM1-213ENST00000510187 IGLV7-43P04211 117 aa9.55□□□□□ -0.88
SQSTM1-213ENST00000510187 C8orf17Q9NRJ1 99 aa9.53□□□□□ -0.88
SQSTM1-213ENST00000510187 SRRM2Q9UQ35 2752 aaKnown RBP9.52□□□□□ -0.89
SQSTM1-213ENST00000510187 A0A1B0GVX0 72 aa9.51□□□□□ -0.89
SQSTM1-213ENST00000510187 PRR4Q16378 134 aa9.51□□□□□ -0.89
SQSTM1-213ENST00000510187 VPS13BQ7Z7G8 4022 aa9.5□□□□□ -0.89
SQSTM1-213ENST00000510187 V9GYY9 64 aa9.48□□□□□ -0.89
SQSTM1-213ENST00000510187 FAM229AH3BQW9 127 aa9.45□□□□□ -0.9
SQSTM1-213ENST00000510187 HSPG2P98160 4391 aa9.44□□□□□ -0.9
SQSTM1-213ENST00000510187 FAT1Q14517 4588 aa9.44□□□□□ -0.9
SQSTM1-213ENST00000510187 IGLV7-46A0A075B6I9 117 aa9.44□□□□□ -0.9
SQSTM1-213ENST00000510187 IGHV6-1A0A0B4J1U7 121 aa9.44□□□□□ -0.9
SQSTM1-213ENST00000510187 CD164Q04900 197 aa9.44□□□□□ -0.9
SQSTM1-213ENST00000510187 BRK1Q8WUW1 75 aa9.44□□□□□ -0.9
SQSTM1-213ENST00000510187 MRPL34Q9BQ48 92 aaKnown RBP9.43□□□□□ -0.9
SQSTM1-213ENST00000510187 PLA2G1BP04054 148 aaKnown RBP9.42□□□□□ -0.9
SQSTM1-213ENST00000510187 KRTAP10-4P60372 401 aaPredicted RBP9.42□□□□□ -0.9
SQSTM1-213ENST00000510187 ANAPC11Q9NYG5 84 aa9.42□□□□□ -0.9
SQSTM1-213ENST00000510187 RYR1P21817 5038 aa9.41□□□□□ -0.9
SQSTM1-213ENST00000510187 Q5VSD8 79 aa9.41□□□□□ -0.9
SQSTM1-213ENST00000510187 C1orf195Q5TG92 126 aa9.4□□□□□ -0.9
SQSTM1-213ENST00000510187 SPINK6Q6UWN8 80 aa9.39□□□□□ -0.91
SQSTM1-213ENST00000510187 KIAA1109Q2LD37 5005 aa9.39□□□□□ -0.91
SQSTM1-213ENST00000510187 SSBP3-AS1Q7Z2R9 100 aa9.38□□□□□ -0.91
SQSTM1-213ENST00000510187 NDUFS5O43920 106 aa9.37□□□□□ -0.91
SQSTM1-213ENST00000510187 Q8N1X5 172 aa9.36□□□□□ -0.91
SQSTM1-213ENST00000510187 KRTAP17-1Q9BYP8 105 aa9.36□□□□□ -0.91
SQSTM1-213ENST00000510187 LIMD2Q9BT23 127 aa9.34□□□□□ -0.91
SQSTM1-213ENST00000510187 COA5Q86WW8 74 aa9.34□□□□□ -0.92
SQSTM1-213ENST00000510187 C8orf87E5RJ46 101 aa9.33□□□□□ -0.92
SQSTM1-213ENST00000510187 A0A087X002 238 aa9.32□□□□□ -0.92
SQSTM1-213ENST00000510187 PCOTHQ58A44 107 aa9.32□□□□□ -0.92
SQSTM1-213ENST00000510187 NOTCH2NLQ7Z3S9 236 aa9.32□□□□□ -0.92
SQSTM1-213ENST00000510187 Q8N9P0 234 aaPredicted RBP9.32□□□□□ -0.92
SQSTM1-213ENST00000510187 PSPHP1O15172 72 aa9.31□□□□□ -0.92
SQSTM1-213ENST00000510187 LOC101927531A0A1B0GV80 90 aa9.31□□□□□ -0.92
SQSTM1-213ENST00000510187 KRTAP1-4P0C5Y4 121 aa9.3□□□□□ -0.92
SQSTM1-213ENST00000510187 A8MUN3 132 aa9.28□□□□□ -0.92
SQSTM1-213ENST00000510187 BIRC6Q9NR09 4857 aa9.28□□□□□ -0.92
SQSTM1-213ENST00000510187 KRTAP13-3Q3SY46 172 aa9.26□□□□□ -0.93
SQSTM1-213ENST00000510187 Q5VV11 94 aa9.26□□□□□ -0.93
SQSTM1-213ENST00000510187 KRTAP13-2Q52LG2 175 aa9.21□□□□□ -0.94
SQSTM1-213ENST00000510187 PRR15LQ9BU68 103 aa9.2□□□□□ -0.94
SQSTM1-213ENST00000510187 Q5W150 140 aa9.19□□□□□ -0.94
SQSTM1-213ENST00000510187 Q75L30 129 aa9.19□□□□□ -0.94
SQSTM1-213ENST00000510187 PRR26Q8N8Z3 221 aa9.19□□□□□ -0.94
SQSTM1-213ENST00000510187 KRTAP4-5Q9BYR2 181 aa9.19□□□□□ -0.94
SQSTM1-213ENST00000510187 HRES1P13985 223 aa9.18□□□□□ -0.94
SQSTM1-213ENST00000510187 PKHD1L1Q86WI1 4243 aa9.18□□□□□ -0.94
SQSTM1-213ENST00000510187 LINC00313P59037 77 aa9.17□□□□□ -0.94
SQSTM1-213ENST00000510187 LINC01558Q9Y6Z2 57 aa9.17□□□□□ -0.94
SQSTM1-213ENST00000510187 TYMSOSQ8TAI1 123 aa9.17□□□□□ -0.94
SQSTM1-213ENST00000510187 CHKB-CPT1BH3BT56 60 aa9.16□□□□□ -0.94
SQSTM1-213ENST00000510187 FLG2Q5D862 2391 aaPredicted RBP9.12□□□□□ -0.95
SQSTM1-213ENST00000510187 HERC2O95714 4834 aa9.11□□□□□ -0.95
SQSTM1-213ENST00000510187 ACYP2P14621 99 aa9.08□□□□□ -0.96
SQSTM1-213ENST00000510187 LRP1Q07954 4544 aaKnown RBP9.08□□□□□ -0.96
SQSTM1-213ENST00000510187 KRTAP16-1A8MUX0 517 aa9.08□□□□□ -0.96
SQSTM1-213ENST00000510187 SPAG11AQ6PDA7 123 aa9.08□□□□□ -0.96
SQSTM1-213ENST00000510187 IGKV2-30P06310 120 aa9.07□□□□□ -0.96
SQSTM1-213ENST00000510187 DMAC1Q96GE9 116 aa9.07□□□□□ -0.96
SQSTM1-213ENST00000510187 C4orf48Q5BLP8 95 aa9.06□□□□□ -0.96
SQSTM1-213ENST00000510187 LINC00304Q8N9R0 145 aa9.05□□□□□ -0.96
SQSTM1-213ENST00000510187 KRTAP10-8P60410 259 aa9.05□□□□□ -0.96
SQSTM1-213ENST00000510187 MYCBP2O75592 4640 aa9.04□□□□□ -0.96
SQSTM1-213ENST00000510187 A6NED7 52 aa9.04□□□□□ -0.96
SQSTM1-213ENST00000510187 FAT3Q8TDW7 4589 aa9.02□□□□□ -0.97
SQSTM1-213ENST00000510187 SPINK1P00995 79 aa9.01□□□□□ -0.97
SQSTM1-213ENST00000510187 CDC42SE1Q9NRR8 79 aa9□□□□□ -0.97
SQSTM1-213ENST00000510187 MT1HL1P0DM35 61 aa8.99□□□□□ -0.97
SQSTM1-213ENST00000510187 ATP11AUNQ6ZP68 121 aa8.99□□□□□ -0.97
SQSTM1-213ENST00000510187 LCA10Q71F78 164 aa8.99□□□□□ -0.97
SQSTM1-213ENST00000510187 ABCA13Q86UQ4 5058 aa8.99□□□□□ -0.97
SQSTM1-213ENST00000510187 TNXBP22105 4242 aa8.99□□□□□ -0.97
SQSTM1-213ENST00000510187 A8MU10 97 aa8.98□□□□□ -0.97
SQSTM1-213ENST00000510187 RPS29P62273 56 aaKnown RBP8.97□□□□□ -0.97
SQSTM1-213ENST00000510187 PMAIP1Q13794 54 aa8.96□□□□□ -0.98
SQSTM1-213ENST00000510187 RETNLBQ9BQ08 111 aa8.94□□□□□ -0.98
SQSTM1-213ENST00000510187 SPINK7P58062 85 aa8.89□□□□□ -0.99
SQSTM1-213ENST00000510187 J3QL48 77 aa8.88□□□□□ -0.99
SQSTM1-213ENST00000510187 DMBT1Q9UGM3 2413 aaPredicted RBP8.88□□□□□ -0.99
SQSTM1-213ENST00000510187 SPTSSBQ8NFR3 76 aa8.87□□□□□ -0.99
SQSTM1-213ENST00000510187 IGKV2D-30A0A075B6S6 120 aa8.86□□□□□ -0.99
SQSTM1-213ENST00000510187 A6NN06 94 aa8.83□□□□□ -1
SQSTM1-213ENST00000510187 C7orf65Q6ZTY9 151 aa8.81□□□□□ -1
SQSTM1-213ENST00000510187 A0A1B0GU69 56 aa8.8□□□□□ -1
SQSTM1-213ENST00000510187 KTN1-AS1Q86SY8 53 aa8.8□□□□□ -1
SQSTM1-213ENST00000510187 PCLOQ9Y6V0 5065 aa8.77□□□□□ -1
SQSTM1-213ENST00000510187 C20orf166-AS1Q96NR2 134 aa8.71□□□□□ -1.01
SQSTM1-213ENST00000510187 A8MUU9 505 aa8.71□□□□□ -1.02
SQSTM1-213ENST00000510187 SPATA8Q6RVD6 105 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms