RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 LY6G6CO95867 125 aa5.86□□□□□ -1.47
CLIP1-204ENST00000501271 IGHV6-1A0A0B4J1U7 121 aa5.85□□□□□ -1.47
CLIP1-204ENST00000501271 LCE2AQ5TA79 106 aaPredicted RBP5.85□□□□□ -1.47
CLIP1-204ENST00000501271 A0A1B0GVX0 72 aa5.85□□□□□ -1.47
CLIP1-204ENST00000501271 IGLV7-43P04211 117 aa5.85□□□□□ -1.47
CLIP1-204ENST00000501271 SPANXA2-OT1Q8N9U9 137 aa5.84□□□□□ -1.47
CLIP1-204ENST00000501271 A0A087X002 238 aa5.83□□□□□ -1.48
CLIP1-204ENST00000501271 NOTCH2NLQ7Z3S9 236 aa5.83□□□□□ -1.48
CLIP1-204ENST00000501271 KRTAP10-2P60368 255 aa5.82□□□□□ -1.48
CLIP1-204ENST00000501271 Q1T7F1 81 aa5.82□□□□□ -1.48
CLIP1-204ENST00000501271 TP53AIP1Q9HCN2 124 aa5.82□□□□□ -1.48
CLIP1-204ENST00000501271 PRO0628Q9UI54 55 aa5.82□□□□□ -1.48
CLIP1-204ENST00000501271 HYDINQ4G0P3 5121 aa5.81□□□□□ -1.48
CLIP1-204ENST00000501271 CDK2AP2O75956 126 aa5.81□□□□□ -1.48
CLIP1-204ENST00000501271 PKD1P98161 4303 aa5.81□□□□□ -1.48
CLIP1-204ENST00000501271 CIRBP-AS1Q8TBR5 109 aa5.8□□□□□ -1.48
CLIP1-204ENST00000501271 NDUFS5O43920 106 aa5.8□□□□□ -1.48
CLIP1-204ENST00000501271 SPINK6Q6UWN8 80 aa5.79□□□□□ -1.48
CLIP1-204ENST00000501271 BRK1Q8WUW1 75 aa5.79□□□□□ -1.48
CLIP1-204ENST00000501271 MRPL34Q9BQ48 92 aaKnown RBP5.79□□□□□ -1.48
CLIP1-204ENST00000501271 PCOTHQ58A44 107 aa5.79□□□□□ -1.48
CLIP1-204ENST00000501271 FAT2Q9NYQ8 4349 aa5.79□□□□□ -1.48
CLIP1-204ENST00000501271 CD164Q04900 197 aa5.78□□□□□ -1.48
CLIP1-204ENST00000501271 LRP1BQ9NZR2 4599 aa5.78□□□□□ -1.48
CLIP1-204ENST00000501271 IGLV7-46A0A075B6I9 117 aa5.77□□□□□ -1.49
CLIP1-204ENST00000501271 PSPHP1O15172 72 aa5.76□□□□□ -1.49
CLIP1-204ENST00000501271 KRTAP10-1P60331 282 aa5.74□□□□□ -1.49
CLIP1-204ENST00000501271 SSBP3-AS1Q7Z2R9 100 aa5.74□□□□□ -1.49
CLIP1-204ENST00000501271 LORP23490 312 aaPredicted RBP5.74□□□□□ -1.49
CLIP1-204ENST00000501271 Q6ZSA8 131 aa5.74□□□□□ -1.49
CLIP1-204ENST00000501271 COA5Q86WW8 74 aa5.73□□□□□ -1.49
CLIP1-204ENST00000501271 VPS13BQ7Z7G8 4022 aa5.73□□□□□ -1.49
CLIP1-204ENST00000501271 KRTAP13-2Q52LG2 175 aa5.73□□□□□ -1.49
CLIP1-204ENST00000501271 A0A0A0MQY5 61 aa5.72□□□□□ -1.49
CLIP1-204ENST00000501271 A8MUN3 132 aa5.72□□□□□ -1.49
CLIP1-204ENST00000501271 Q5W150 140 aa5.72□□□□□ -1.49
CLIP1-204ENST00000501271 Q8N9P0 234 aaPredicted RBP5.72□□□□□ -1.49
CLIP1-204ENST00000501271 KRTAP13-3Q3SY46 172 aa5.71□□□□□ -1.5
CLIP1-204ENST00000501271 V9GYY9 64 aa5.71□□□□□ -1.5
CLIP1-204ENST00000501271 Q5VV11 94 aa5.69□□□□□ -1.5
CLIP1-204ENST00000501271 C8orf87E5RJ46 101 aa5.68□□□□□ -1.5
CLIP1-204ENST00000501271 C1orf195Q5TG92 126 aa5.68□□□□□ -1.5
CLIP1-204ENST00000501271 LOC101927531A0A1B0GV80 90 aa5.67□□□□□ -1.5
CLIP1-204ENST00000501271 KRTAP1-4P0C5Y4 121 aa5.67□□□□□ -1.5
CLIP1-204ENST00000501271 LOC100996750A0A140TA64 210 aa5.66□□□□□ -1.5
CLIP1-204ENST00000501271 LIMD2Q9BT23 127 aa5.66□□□□□ -1.5
CLIP1-204ENST00000501271 KRTAP4-6Q9BYQ5 205 aa5.66□□□□□ -1.5
CLIP1-204ENST00000501271 PKHD1P08F94 4074 aa5.66□□□□□ -1.5
CLIP1-204ENST00000501271 HRES1P13985 223 aa5.66□□□□□ -1.5
CLIP1-204ENST00000501271 LINC00313P59037 77 aa5.65□□□□□ -1.5
CLIP1-204ENST00000501271 PRR15LQ9BU68 103 aa5.65□□□□□ -1.5
CLIP1-204ENST00000501271 SACSQ9NZJ4 4579 aa5.62□□□□□ -1.51
CLIP1-204ENST00000501271 A8MU10 97 aa5.62□□□□□ -1.51
CLIP1-204ENST00000501271 RETNLBQ9BQ08 111 aa5.62□□□□□ -1.51
CLIP1-204ENST00000501271 KRTAP16-1A8MUX0 517 aa5.62□□□□□ -1.51
CLIP1-204ENST00000501271 CHKB-CPT1BH3BT56 60 aa5.62□□□□□ -1.51
CLIP1-204ENST00000501271 SPAG11AQ6PDA7 123 aa5.61□□□□□ -1.51
CLIP1-204ENST00000501271 KRTAP17-1Q9BYP8 105 aa5.6□□□□□ -1.51
CLIP1-204ENST00000501271 Q75L30 129 aa5.59□□□□□ -1.51
CLIP1-204ENST00000501271 PLA2G1BP04054 148 aaKnown RBP5.59□□□□□ -1.51
CLIP1-204ENST00000501271 LINC01558Q9Y6Z2 57 aa5.58□□□□□ -1.52
CLIP1-204ENST00000501271 IGKV2-30P06310 120 aa5.57□□□□□ -1.52
CLIP1-204ENST00000501271 TYMSOSQ8TAI1 123 aa5.57□□□□□ -1.52
CLIP1-204ENST00000501271 PRR26Q8N8Z3 221 aa5.56□□□□□ -1.52
CLIP1-204ENST00000501271 DYNC1H1Q14204 4646 aaKnown RBP5.56□□□□□ -1.52
CLIP1-204ENST00000501271 DMAC1Q96GE9 116 aa5.55□□□□□ -1.52
CLIP1-204ENST00000501271 A6NED7 52 aa5.54□□□□□ -1.52
CLIP1-204ENST00000501271 ACYP2P14621 99 aa5.54□□□□□ -1.52
CLIP1-204ENST00000501271 LCA10Q71F78 164 aa5.54□□□□□ -1.52
CLIP1-204ENST00000501271 SPINK1P00995 79 aa5.53□□□□□ -1.52
CLIP1-204ENST00000501271 IGKV2D-30A0A075B6S6 120 aa5.5□□□□□ -1.53
CLIP1-204ENST00000501271 APOBP04114 4563 aaKnown RBP5.5□□□□□ -1.53
CLIP1-204ENST00000501271 FAT1Q14517 4588 aa5.5□□□□□ -1.53
CLIP1-204ENST00000501271 SMR3BP02814 79 aaPredicted RBP5.49□□□□□ -1.53
CLIP1-204ENST00000501271 LINC00304Q8N9R0 145 aa5.49□□□□□ -1.53
CLIP1-204ENST00000501271 SPINK7P58062 85 aa5.49□□□□□ -1.53
CLIP1-204ENST00000501271 PKHD1L1Q86WI1 4243 aa5.48□□□□□ -1.53
CLIP1-204ENST00000501271 CDC42SE1Q9NRR8 79 aa5.48□□□□□ -1.53
CLIP1-204ENST00000501271 RPS29P62273 56 aaKnown RBP5.46□□□□□ -1.53
CLIP1-204ENST00000501271 SPTSSBQ8NFR3 76 aa5.46□□□□□ -1.53
CLIP1-204ENST00000501271 PMAIP1Q13794 54 aa5.46□□□□□ -1.54
CLIP1-204ENST00000501271 A0A1B0GVY2 172 aa5.45□□□□□ -1.54
CLIP1-204ENST00000501271 ATP11AUNQ6ZP68 121 aa5.44□□□□□ -1.54
CLIP1-204ENST00000501271 KRTAP10-4P60372 401 aaPredicted RBP5.44□□□□□ -1.54
CLIP1-204ENST00000501271 RYR2Q92736 4967 aa5.44□□□□□ -1.54
CLIP1-204ENST00000501271 C7orf65Q6ZTY9 151 aa5.43□□□□□ -1.54
CLIP1-204ENST00000501271 C9orf92A6NGG3 77 aa5.39□□□□□ -1.55
CLIP1-204ENST00000501271 A0A1B0GU69 56 aa5.39□□□□□ -1.55
CLIP1-204ENST00000501271 A6NN06 94 aa5.39□□□□□ -1.55
CLIP1-204ENST00000501271 KMT2CQ8NEZ4 4911 aaKnown RBP5.39□□□□□ -1.55
CLIP1-204ENST00000501271 Q8N1X5 172 aa5.38□□□□□ -1.55
CLIP1-204ENST00000501271 XP32Q5T750 250 aa5.37□□□□□ -1.55
CLIP1-204ENST00000501271 C20orf166-AS1Q96NR2 134 aa5.36□□□□□ -1.55
CLIP1-204ENST00000501271 A8MUU9 505 aa5.35□□□□□ -1.55
CLIP1-204ENST00000501271 KTN1-AS1Q86SY8 53 aa5.34□□□□□ -1.56
CLIP1-204ENST00000501271 FLG2Q5D862 2391 aaPredicted RBP5.31□□□□□ -1.56
CLIP1-204ENST00000501271 TNXBP22105 4242 aa5.3□□□□□ -1.56
CLIP1-204ENST00000501271 LRP1Q07954 4544 aaKnown RBP5.3□□□□□ -1.56
CLIP1-204ENST00000501271 KRTAP9-6A0A140TA67 174 aa5.29□□□□□ -1.56
CLIP1-204ENST00000501271 SPATA8Q6RVD6 105 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms