RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CD164Q04900 197 aa9.89□□□□□ -0.83
CCDC88B-210ENST00000494566 COA5Q86WW8 74 aa9.89□□□□□ -0.83
CCDC88B-210ENST00000494566 RETNLBQ9BQ08 111 aa9.89□□□□□ -0.83
CCDC88B-210ENST00000494566 WWC2-AS2Q96NR7 200 aa9.88□□□□□ -0.83
CCDC88B-210ENST00000494566 PLAC8Q9NZF1 115 aa9.88□□□□□ -0.83
CCDC88B-210ENST00000494566 Q8N9P0 234 aaPredicted RBP9.87□□□□□ -0.83
CCDC88B-210ENST00000494566 Q96NJ1 140 aa9.87□□□□□ -0.83
CCDC88B-210ENST00000494566 ZNF861PO60384 105 aa9.86□□□□□ -0.83
CCDC88B-210ENST00000494566 V9GYY9 64 aa9.86□□□□□ -0.83
CCDC88B-210ENST00000494566 LRP1BQ9NZR2 4599 aa9.85□□□□□ -0.83
CCDC88B-210ENST00000494566 LINC00483Q53H64 154 aa9.85□□□□□ -0.83
CCDC88B-210ENST00000494566 KRTAP10-2P60368 255 aa9.85□□□□□ -0.83
CCDC88B-210ENST00000494566 CDK2AP2O75956 126 aa9.83□□□□□ -0.84
CCDC88B-210ENST00000494566 C8orf17Q9NRJ1 99 aa9.83□□□□□ -0.84
CCDC88B-210ENST00000494566 A6NED7 52 aa9.82□□□□□ -0.84
CCDC88B-210ENST00000494566 PMAIP1Q13794 54 aa9.82□□□□□ -0.84
CCDC88B-210ENST00000494566 CIRBP-AS1Q8TBR5 109 aa9.81□□□□□ -0.84
CCDC88B-210ENST00000494566 ZNF706Q9Y5V0 76 aaPredicted RBP9.8□□□□□ -0.84
CCDC88B-210ENST00000494566 PKD1P98161 4303 aa9.8□□□□□ -0.84
CCDC88B-210ENST00000494566 FAT2Q9NYQ8 4349 aa9.79□□□□□ -0.84
CCDC88B-210ENST00000494566 SEC61GP60059 68 aa9.78□□□□□ -0.84
CCDC88B-210ENST00000494566 IGLV7-43P04211 117 aa9.77□□□□□ -0.84
CCDC88B-210ENST00000494566 SPANXA2-OT1Q8N9U9 137 aa9.76□□□□□ -0.85
CCDC88B-210ENST00000494566 A0A1B0GVX0 72 aa9.75□□□□□ -0.85
CCDC88B-210ENST00000494566 PRR26Q8N8Z3 221 aa9.74□□□□□ -0.85
CCDC88B-210ENST00000494566 IGLV7-46A0A075B6I9 117 aa9.73□□□□□ -0.85
CCDC88B-210ENST00000494566 LCA10Q71F78 164 aa9.73□□□□□ -0.85
CCDC88B-210ENST00000494566 Q5W150 140 aa9.73□□□□□ -0.85
CCDC88B-210ENST00000494566 H3BPC8 53 aa9.72□□□□□ -0.85
CCDC88B-210ENST00000494566 VPS13BQ7Z7G8 4022 aa9.71□□□□□ -0.86
CCDC88B-210ENST00000494566 MRPL34Q9BQ48 92 aaKnown RBP9.71□□□□□ -0.86
CCDC88B-210ENST00000494566 LIMD2Q9BT23 127 aa9.7□□□□□ -0.86
CCDC88B-210ENST00000494566 HRES1P13985 223 aa9.7□□□□□ -0.86
CCDC88B-210ENST00000494566 PKHD1P08F94 4074 aa9.69□□□□□ -0.86
CCDC88B-210ENST00000494566 KRTAP10-1P60331 282 aa9.69□□□□□ -0.86
CCDC88B-210ENST00000494566 SPINK7P58062 85 aa9.66□□□□□ -0.86
CCDC88B-210ENST00000494566 ASB16-AS1Q495Z4 193 aa9.64□□□□□ -0.87
CCDC88B-210ENST00000494566 TP53AIP1Q9HCN2 124 aa9.64□□□□□ -0.87
CCDC88B-210ENST00000494566 SACSQ9NZJ4 4579 aa9.6□□□□□ -0.87
CCDC88B-210ENST00000494566 LOC101927531A0A1B0GV80 90 aa9.6□□□□□ -0.87
CCDC88B-210ENST00000494566 KRTAP13-2Q52LG2 175 aa9.59□□□□□ -0.87
CCDC88B-210ENST00000494566 Q75L30 129 aa9.58□□□□□ -0.88
CCDC88B-210ENST00000494566 Q6ZSA8 131 aa9.54□□□□□ -0.88
CCDC88B-210ENST00000494566 SSBP3-AS1Q7Z2R9 100 aa9.52□□□□□ -0.89
CCDC88B-210ENST00000494566 LINC01558Q9Y6Z2 57 aa9.5□□□□□ -0.89
CCDC88B-210ENST00000494566 FAT1Q14517 4588 aa9.48□□□□□ -0.89
CCDC88B-210ENST00000494566 IGKV2D-30A0A075B6S6 120 aa9.48□□□□□ -0.89
CCDC88B-210ENST00000494566 IGKV2-30P06310 120 aa9.48□□□□□ -0.89
CCDC88B-210ENST00000494566 DYNC1H1Q14204 4646 aaKnown RBP9.47□□□□□ -0.89
CCDC88B-210ENST00000494566 KRTAP1-4P0C5Y4 121 aa9.47□□□□□ -0.89
CCDC88B-210ENST00000494566 CDC42SE1Q9NRR8 79 aa9.46□□□□□ -0.89
CCDC88B-210ENST00000494566 LINC00313P59037 77 aa9.45□□□□□ -0.9
CCDC88B-210ENST00000494566 ATP11AUNQ6ZP68 121 aa9.45□□□□□ -0.9
CCDC88B-210ENST00000494566 KTN1-AS1Q86SY8 53 aa9.43□□□□□ -0.9
CCDC88B-210ENST00000494566 SPINK1P00995 79 aa9.42□□□□□ -0.9
CCDC88B-210ENST00000494566 PLA2G1BP04054 148 aaKnown RBP9.42□□□□□ -0.9
CCDC88B-210ENST00000494566 A6NN06 94 aa9.41□□□□□ -0.9
CCDC88B-210ENST00000494566 KRTAP13-3Q3SY46 172 aa9.41□□□□□ -0.9
CCDC88B-210ENST00000494566 SMR3BP02814 79 aaPredicted RBP9.41□□□□□ -0.9
CCDC88B-210ENST00000494566 ACYP2P14621 99 aa9.39□□□□□ -0.91
CCDC88B-210ENST00000494566 PRAC1Q96KF2 57 aa9.39□□□□□ -0.91
CCDC88B-210ENST00000494566 RBM12B-AS1Q9P1G2 102 aa9.39□□□□□ -0.91
CCDC88B-210ENST00000494566 ADM2Q7Z4H4 148 aa9.37□□□□□ -0.91
CCDC88B-210ENST00000494566 C8orf87E5RJ46 101 aa9.36□□□□□ -0.91
CCDC88B-210ENST00000494566 TYMSOSQ8TAI1 123 aa9.35□□□□□ -0.91
CCDC88B-210ENST00000494566 A0A1B0GU69 56 aa9.33□□□□□ -0.92
CCDC88B-210ENST00000494566 KMT2CQ8NEZ4 4911 aaKnown RBP9.32□□□□□ -0.92
CCDC88B-210ENST00000494566 APOBP04114 4563 aaKnown RBP9.32□□□□□ -0.92
CCDC88B-210ENST00000494566 C4orf48Q5BLP8 95 aa9.31□□□□□ -0.92
CCDC88B-210ENST00000494566 Q8N1X5 172 aa9.31□□□□□ -0.92
CCDC88B-210ENST00000494566 KRTAP16-1A8MUX0 517 aa9.29□□□□□ -0.92
CCDC88B-210ENST00000494566 C7orf65Q6ZTY9 151 aa9.29□□□□□ -0.92
CCDC88B-210ENST00000494566 FAM229AH3BQW9 127 aa9.28□□□□□ -0.92
CCDC88B-210ENST00000494566 DMAC1Q96GE9 116 aa9.28□□□□□ -0.92
CCDC88B-210ENST00000494566 RYR2Q92736 4967 aa9.24□□□□□ -0.93
CCDC88B-210ENST00000494566 KRTAP21-3Q3LHN1 58 aa9.23□□□□□ -0.93
CCDC88B-210ENST00000494566 LINC00304Q8N9R0 145 aa9.2□□□□□ -0.94
CCDC88B-210ENST00000494566 FLG2Q5D862 2391 aaPredicted RBP9.19□□□□□ -0.94
CCDC88B-210ENST00000494566 C9orf92A6NGG3 77 aa9.19□□□□□ -0.94
CCDC88B-210ENST00000494566 MIR22HGQ0VDD5 57 aa9.15□□□□□ -0.94
CCDC88B-210ENST00000494566 A0A1B0GVY2 172 aa9.13□□□□□ -0.95
CCDC88B-210ENST00000494566 LRP1Q07954 4544 aaKnown RBP9.13□□□□□ -0.95
CCDC88B-210ENST00000494566 PKHD1L1Q86WI1 4243 aa9.12□□□□□ -0.95
CCDC88B-210ENST00000494566 DMBT1Q9UGM3 2413 aaPredicted RBP9.08□□□□□ -0.96
CCDC88B-210ENST00000494566 UQCR11O14957 56 aa9.08□□□□□ -0.96
CCDC88B-210ENST00000494566 KRTAP10-4P60372 401 aaPredicted RBP9.08□□□□□ -0.96
CCDC88B-210ENST00000494566 SPATA8Q6RVD6 105 aa9.02□□□□□ -0.96
CCDC88B-210ENST00000494566 RYR3Q15413 4870 aa9.02□□□□□ -0.97
CCDC88B-210ENST00000494566 CSAG1Q6PB30 78 aa8.97□□□□□ -0.97
CCDC88B-210ENST00000494566 MYCBP2O75592 4640 aa8.96□□□□□ -0.98
CCDC88B-210ENST00000494566 RPS29P62273 56 aaKnown RBP8.96□□□□□ -0.98
CCDC88B-210ENST00000494566 HSPG2P98160 4391 aa8.95□□□□□ -0.98
CCDC88B-210ENST00000494566 FAT3Q8TDW7 4589 aa8.94□□□□□ -0.98
CCDC88B-210ENST00000494566 TNXBP22105 4242 aa8.93□□□□□ -0.98
CCDC88B-210ENST00000494566 CRIPTQ9P021 101 aa8.91□□□□□ -0.98
CCDC88B-210ENST00000494566 A8MUU9 505 aa8.87□□□□□ -0.99
CCDC88B-210ENST00000494566 C20orf166-AS1Q96NR2 134 aa8.86□□□□□ -0.99
CCDC88B-210ENST00000494566 H0YAA0 97 aa8.85□□□□□ -0.99
CCDC88B-210ENST00000494566 KRTAP3-1Q9BYR8 98 aa8.84□□□□□ -0.99
CCDC88B-210ENST00000494566 KIAA1109Q2LD37 5005 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms